Experiment: dichromate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_16090 and IAI46_16095 are separated by 253 nucleotides IAI46_16095 and IAI46_16100 overlap by 7 nucleotides IAI46_16100 and IAI46_16105 are separated by 2 nucleotides
IAI46_16090: IAI46_16090 - tryptophan 2,3-dioxygenase, at 3,374,222 to 3,375,064
_16090
IAI46_16095: IAI46_16095 - MaoC family dehydratase, at 3,375,318 to 3,375,812
_16095
IAI46_16100: IAI46_16100 - ornithine cyclodeaminase family protein, at 3,375,806 to 3,376,756
_16100
IAI46_16105: IAI46_16105 - 4-hydroxy-2-oxovalerate aldolase, at 3,376,759 to 3,377,760
_16105
IAI46_16110: IAI46_16110 - acetaldehyde dehydrogenase (acetylating), at 3,377,744 to 3,378,631
_16110
Position (kb)
3375
3376
3377 Strain fitness (log2 ratio)
-2
-1
0
1 at 3374.840 kb on - strand, within IAI46_16090 at 3374.998 kb on - strand at 3374.998 kb on - strand at 3375.006 kb on + strand at 3375.006 kb on + strand at 3375.007 kb on - strand at 3375.007 kb on - strand at 3375.048 kb on - strand at 3375.070 kb on - strand at 3375.070 kb on - strand at 3375.155 kb on + strand at 3375.155 kb on + strand at 3375.156 kb on - strand at 3375.214 kb on + strand at 3375.214 kb on + strand at 3375.214 kb on + strand at 3375.214 kb on + strand at 3375.331 kb on + strand at 3375.464 kb on + strand, within IAI46_16095 at 3375.483 kb on - strand, within IAI46_16095 at 3375.638 kb on - strand, within IAI46_16095 at 3375.760 kb on + strand, within IAI46_16095 at 3375.784 kb on + strand at 3375.834 kb on + strand at 3375.836 kb on + strand at 3375.836 kb on + strand at 3375.837 kb on - strand at 3375.967 kb on - strand, within IAI46_16100 at 3375.967 kb on - strand, within IAI46_16100 at 3376.134 kb on + strand, within IAI46_16100 at 3376.134 kb on + strand, within IAI46_16100 at 3376.134 kb on + strand, within IAI46_16100 at 3376.177 kb on + strand, within IAI46_16100 at 3376.178 kb on - strand, within IAI46_16100 at 3376.670 kb on + strand at 3376.670 kb on + strand at 3376.795 kb on + strand at 3376.795 kb on + strand at 3376.796 kb on - strand at 3376.796 kb on - strand at 3377.176 kb on - strand, within IAI46_16105 at 3377.298 kb on - strand, within IAI46_16105 at 3377.363 kb on - strand, within IAI46_16105 at 3377.455 kb on + strand, within IAI46_16105 at 3377.515 kb on - strand, within IAI46_16105 at 3377.659 kb on - strand, within IAI46_16105 at 3377.663 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic remove 3,374,840 - IAI46_16090 0.73 +0.9 3,374,998 - -0.8 3,374,998 - -0.1 3,375,006 + +0.3 3,375,006 + -1.7 3,375,007 - +0.4 3,375,007 - +0.7 3,375,048 - +0.3 3,375,070 - -0.3 3,375,070 - +0.3 3,375,155 + +0.4 3,375,155 + -0.4 3,375,156 - +1.2 3,375,214 + +0.2 3,375,214 + +0.6 3,375,214 + -0.8 3,375,214 + -2.1 3,375,331 + -0.5 3,375,464 + IAI46_16095 0.29 -0.9 3,375,483 - IAI46_16095 0.33 -0.1 3,375,638 - IAI46_16095 0.65 -0.0 3,375,760 + IAI46_16095 0.89 +0.2 3,375,784 + -1.3 3,375,834 + +1.7 3,375,836 + -0.1 3,375,836 + -0.5 3,375,837 - -0.9 3,375,967 - IAI46_16100 0.17 +0.7 3,375,967 - IAI46_16100 0.17 -0.3 3,376,134 + IAI46_16100 0.34 +1.0 3,376,134 + IAI46_16100 0.34 -0.3 3,376,134 + IAI46_16100 0.34 +0.3 3,376,177 + IAI46_16100 0.39 -0.8 3,376,178 - IAI46_16100 0.39 -0.1 3,376,670 + -0.1 3,376,670 + -1.8 3,376,795 + +0.6 3,376,795 + +0.8 3,376,796 - +0.5 3,376,796 - +0.9 3,377,176 - IAI46_16105 0.42 +0.4 3,377,298 - IAI46_16105 0.54 +1.1 3,377,363 - IAI46_16105 0.60 +0.4 3,377,455 + IAI46_16105 0.69 -0.9 3,377,515 - IAI46_16105 0.75 +0.7 3,377,659 - IAI46_16105 0.90 +0.5 3,377,663 - -0.3
Or see this region's nucleotide sequence