Strain Fitness in Serratia liquefaciens MT49 around IAI46_14380

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14375 and IAI46_14380 are separated by 189 nucleotidesIAI46_14380 and IAI46_14385 are separated by 30 nucleotides IAI46_14375: IAI46_14375 - protein kinase YeaG, at 3,048,428 to 3,050,362 _14375 IAI46_14380: IAI46_14380 - YeaH/YhbH family protein, at 3,050,552 to 3,051,820 _14380 IAI46_14385: IAI46_14385 - GNAT family N-acetyltransferase, at 3,051,851 to 3,052,291 _14385 Position (kb) 3050 3051 3052Strain fitness (log2 ratio) -2 -1 0 1at 3049.589 kb on + strand, within IAI46_14375at 3049.589 kb on + strand, within IAI46_14375at 3049.644 kb on - strand, within IAI46_14375at 3049.769 kb on + strand, within IAI46_14375at 3049.769 kb on + strand, within IAI46_14375at 3049.769 kb on + strand, within IAI46_14375at 3049.770 kb on - strand, within IAI46_14375at 3049.827 kb on - strand, within IAI46_14375at 3049.899 kb on - strand, within IAI46_14375at 3049.899 kb on - strand, within IAI46_14375at 3049.943 kb on + strand, within IAI46_14375at 3050.156 kb on + strand, within IAI46_14375at 3050.284 kb on + strandat 3050.285 kb on - strandat 3050.285 kb on - strandat 3050.285 kb on - strandat 3050.300 kb on + strandat 3050.337 kb on - strandat 3050.368 kb on - strandat 3050.377 kb on + strandat 3050.396 kb on + strandat 3050.397 kb on - strandat 3050.397 kb on - strandat 3050.454 kb on + strandat 3050.455 kb on - strandat 3050.455 kb on - strandat 3050.462 kb on + strandat 3050.510 kb on + strandat 3050.510 kb on + strandat 3050.510 kb on + strandat 3050.510 kb on + strandat 3050.513 kb on - strandat 3050.521 kb on + strandat 3050.522 kb on - strandat 3050.551 kb on + strandat 3050.738 kb on - strand, within IAI46_14380at 3050.918 kb on + strand, within IAI46_14380at 3050.919 kb on - strand, within IAI46_14380at 3050.974 kb on + strand, within IAI46_14380at 3051.011 kb on + strand, within IAI46_14380at 3051.233 kb on - strand, within IAI46_14380at 3051.249 kb on + strand, within IAI46_14380at 3051.256 kb on + strand, within IAI46_14380at 3051.263 kb on + strand, within IAI46_14380at 3051.365 kb on + strand, within IAI46_14380at 3051.365 kb on + strand, within IAI46_14380at 3051.365 kb on + strand, within IAI46_14380at 3051.366 kb on - strand, within IAI46_14380at 3051.378 kb on - strand, within IAI46_14380at 3051.378 kb on - strand, within IAI46_14380at 3051.400 kb on + strand, within IAI46_14380at 3051.419 kb on + strand, within IAI46_14380at 3051.419 kb on + strand, within IAI46_14380at 3051.419 kb on + strand, within IAI46_14380at 3051.420 kb on - strand, within IAI46_14380at 3051.421 kb on + strand, within IAI46_14380at 3051.422 kb on - strand, within IAI46_14380at 3051.422 kb on - strand, within IAI46_14380at 3051.423 kb on + strand, within IAI46_14380at 3051.424 kb on - strand, within IAI46_14380at 3051.424 kb on - strand, within IAI46_14380at 3051.470 kb on + strand, within IAI46_14380at 3051.566 kb on + strand, within IAI46_14380at 3051.659 kb on + strand, within IAI46_14380at 3051.662 kb on + strand, within IAI46_14380at 3051.669 kb on - strand, within IAI46_14380at 3052.097 kb on + strand, within IAI46_14385at 3052.122 kb on + strand, within IAI46_14385at 3052.238 kb on - strand, within IAI46_14385at 3052.414 kb on + strandat 3052.477 kb on - strandat 3052.512 kb on + strandat 3052.512 kb on + strandat 3052.516 kb on + strandat 3052.517 kb on - strandat 3052.610 kb on - strandat 3052.669 kb on - strandat 3052.676 kb on + strandat 3052.689 kb on - strandat 3052.699 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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3,049,589 + IAI46_14375 0.60 -2.4
3,049,589 + IAI46_14375 0.60 -0.1
3,049,644 - IAI46_14375 0.63 +0.4
3,049,769 + IAI46_14375 0.69 +0.2
3,049,769 + IAI46_14375 0.69 -1.2
3,049,769 + IAI46_14375 0.69 +0.9
3,049,770 - IAI46_14375 0.69 -0.5
3,049,827 - IAI46_14375 0.72 +0.1
3,049,899 - IAI46_14375 0.76 -0.1
3,049,899 - IAI46_14375 0.76 -0.6
3,049,943 + IAI46_14375 0.78 -0.8
3,050,156 + IAI46_14375 0.89 -0.6
3,050,284 + +0.1
3,050,285 - -0.4
3,050,285 - -1.4
3,050,285 - -1.1
3,050,300 + -0.0
3,050,337 - +1.1
3,050,368 - +0.9
3,050,377 + +0.3
3,050,396 + -0.8
3,050,397 - +0.3
3,050,397 - +0.4
3,050,454 + -1.7
3,050,455 - +0.9
3,050,455 - +0.4
3,050,462 + +1.2
3,050,510 + -0.7
3,050,510 + +0.8
3,050,510 + -0.3
3,050,510 + -0.6
3,050,513 - +0.3
3,050,521 + -1.0
3,050,522 - +0.1
3,050,551 + +0.3
3,050,738 - IAI46_14380 0.15 +0.7
3,050,918 + IAI46_14380 0.29 +0.0
3,050,919 - IAI46_14380 0.29 +0.5
3,050,974 + IAI46_14380 0.33 +0.1
3,051,011 + IAI46_14380 0.36 -1.9
3,051,233 - IAI46_14380 0.54 -0.2
3,051,249 + IAI46_14380 0.55 +0.5
3,051,256 + IAI46_14380 0.55 -0.7
3,051,263 + IAI46_14380 0.56 -0.4
3,051,365 + IAI46_14380 0.64 -0.1
3,051,365 + IAI46_14380 0.64 -1.9
3,051,365 + IAI46_14380 0.64 +0.8
3,051,366 - IAI46_14380 0.64 -0.3
3,051,378 - IAI46_14380 0.65 +0.4
3,051,378 - IAI46_14380 0.65 +1.6
3,051,400 + IAI46_14380 0.67 -1.5
3,051,419 + IAI46_14380 0.68 +1.6
3,051,419 + IAI46_14380 0.68 -0.8
3,051,419 + IAI46_14380 0.68 +0.5
3,051,420 - IAI46_14380 0.68 +0.9
3,051,421 + IAI46_14380 0.68 -0.6
3,051,422 - IAI46_14380 0.69 +0.4
3,051,422 - IAI46_14380 0.69 +0.3
3,051,423 + IAI46_14380 0.69 -1.1
3,051,424 - IAI46_14380 0.69 -0.5
3,051,424 - IAI46_14380 0.69 +0.4
3,051,470 + IAI46_14380 0.72 -0.2
3,051,566 + IAI46_14380 0.80 +0.6
3,051,659 + IAI46_14380 0.87 +0.7
3,051,662 + IAI46_14380 0.87 -0.4
3,051,669 - IAI46_14380 0.88 +0.1
3,052,097 + IAI46_14385 0.56 -0.3
3,052,122 + IAI46_14385 0.61 +1.4
3,052,238 - IAI46_14385 0.88 +0.7
3,052,414 + +0.6
3,052,477 - -1.8
3,052,512 + +0.1
3,052,512 + -0.8
3,052,516 + -1.1
3,052,517 - -0.8
3,052,610 - -0.1
3,052,669 - -1.7
3,052,676 + +0.8
3,052,689 - +1.2
3,052,699 + +0.9

Or see this region's nucleotide sequence