Strain Fitness in Serratia liquefaciens MT49 around IAI46_13555

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13550 and IAI46_13555 are separated by 3 nucleotidesIAI46_13555 and IAI46_13560 are separated by 301 nucleotides IAI46_13550: IAI46_13550 - peroxidase-related enzyme, at 2,893,444 to 2,894,631 _13550 IAI46_13555: IAI46_13555 - LysR family transcriptional regulator, at 2,894,635 to 2,895,531 _13555 IAI46_13560: IAI46_13560 - hypothetical protein, at 2,895,833 to 2,896,738 _13560 Position (kb) 2894 2895 2896Strain fitness (log2 ratio) -2 -1 0 1at 2893.843 kb on + strand, within IAI46_13550at 2894.182 kb on + strand, within IAI46_13550at 2894.183 kb on - strand, within IAI46_13550at 2894.185 kb on + strand, within IAI46_13550at 2894.185 kb on + strand, within IAI46_13550at 2894.186 kb on - strand, within IAI46_13550at 2894.244 kb on + strand, within IAI46_13550at 2894.245 kb on - strand, within IAI46_13550at 2894.388 kb on + strand, within IAI46_13550at 2894.563 kb on + strandat 2894.747 kb on - strand, within IAI46_13555at 2894.924 kb on + strand, within IAI46_13555at 2894.931 kb on + strand, within IAI46_13555at 2895.113 kb on - strand, within IAI46_13555at 2895.206 kb on - strand, within IAI46_13555at 2895.392 kb on - strand, within IAI46_13555at 2895.524 kb on - strandat 2895.590 kb on + strandat 2895.603 kb on - strandat 2895.662 kb on + strandat 2895.671 kb on + strandat 2895.729 kb on + strandat 2895.729 kb on + strandat 2895.729 kb on + strandat 2895.729 kb on + strandat 2895.729 kb on + strandat 2895.730 kb on - strandat 2895.736 kb on - strandat 2895.803 kb on + strandat 2895.803 kb on + strandat 2895.803 kb on + strandat 2895.835 kb on - strandat 2895.888 kb on + strandat 2895.913 kb on - strandat 2895.967 kb on + strand, within IAI46_13560at 2895.968 kb on - strand, within IAI46_13560at 2895.973 kb on + strand, within IAI46_13560at 2896.049 kb on + strand, within IAI46_13560at 2896.050 kb on - strand, within IAI46_13560at 2896.098 kb on + strand, within IAI46_13560at 2896.098 kb on + strand, within IAI46_13560at 2896.098 kb on + strand, within IAI46_13560at 2896.099 kb on - strand, within IAI46_13560at 2896.195 kb on + strand, within IAI46_13560at 2896.199 kb on + strand, within IAI46_13560at 2896.241 kb on - strand, within IAI46_13560at 2896.243 kb on - strand, within IAI46_13560at 2896.404 kb on + strand, within IAI46_13560at 2896.404 kb on + strand, within IAI46_13560at 2896.405 kb on - strand, within IAI46_13560at 2896.474 kb on - strand, within IAI46_13560at 2896.528 kb on + strand, within IAI46_13560at 2896.529 kb on - strand, within IAI46_13560at 2896.529 kb on - strand, within IAI46_13560

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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2,893,843 + IAI46_13550 0.34 -0.6
2,894,182 + IAI46_13550 0.62 +0.4
2,894,183 - IAI46_13550 0.62 +0.3
2,894,185 + IAI46_13550 0.62 -0.6
2,894,185 + IAI46_13550 0.62 +0.3
2,894,186 - IAI46_13550 0.62 +1.1
2,894,244 + IAI46_13550 0.67 -0.6
2,894,245 - IAI46_13550 0.67 -1.9
2,894,388 + IAI46_13550 0.79 +0.7
2,894,563 + +0.4
2,894,747 - IAI46_13555 0.12 -0.5
2,894,924 + IAI46_13555 0.32 -0.8
2,894,931 + IAI46_13555 0.33 +0.7
2,895,113 - IAI46_13555 0.53 -0.6
2,895,206 - IAI46_13555 0.64 +0.1
2,895,392 - IAI46_13555 0.84 +0.8
2,895,524 - +1.0
2,895,590 + -2.0
2,895,603 - -0.6
2,895,662 + -0.8
2,895,671 + +0.5
2,895,729 + +0.3
2,895,729 + +0.7
2,895,729 + -0.9
2,895,729 + -0.2
2,895,729 + -1.2
2,895,730 - +0.1
2,895,736 - +0.7
2,895,803 + -0.7
2,895,803 + +0.1
2,895,803 + +0.0
2,895,835 - +0.8
2,895,888 + +1.1
2,895,913 - +0.7
2,895,967 + IAI46_13560 0.15 -0.2
2,895,968 - IAI46_13560 0.15 -1.2
2,895,973 + IAI46_13560 0.15 -0.1
2,896,049 + IAI46_13560 0.24 +0.4
2,896,050 - IAI46_13560 0.24 -0.2
2,896,098 + IAI46_13560 0.29 +0.7
2,896,098 + IAI46_13560 0.29 -1.4
2,896,098 + IAI46_13560 0.29 +0.8
2,896,099 - IAI46_13560 0.29 -0.1
2,896,195 + IAI46_13560 0.40 -0.8
2,896,199 + IAI46_13560 0.40 +1.4
2,896,241 - IAI46_13560 0.45 -0.2
2,896,243 - IAI46_13560 0.45 +0.0
2,896,404 + IAI46_13560 0.63 -0.4
2,896,404 + IAI46_13560 0.63 -0.2
2,896,405 - IAI46_13560 0.63 +0.7
2,896,474 - IAI46_13560 0.71 -0.2
2,896,528 + IAI46_13560 0.77 -1.4
2,896,529 - IAI46_13560 0.77 +0.6
2,896,529 - IAI46_13560 0.77 +0.4

Or see this region's nucleotide sequence