Strain Fitness in Serratia liquefaciens MT49 around IAI46_13305

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13295 and IAI46_13300 are separated by 73 nucleotidesIAI46_13300 and IAI46_13305 overlap by 4 nucleotidesIAI46_13305 and IAI46_13310 are separated by 66 nucleotides IAI46_13295: IAI46_13295 - dihydromonapterin reductase, at 2,836,109 to 2,836,831 _13295 IAI46_13300: IAI46_13300 - two-component system response regulator RstA, at 2,836,905 to 2,837,630 _13300 IAI46_13305: IAI46_13305 - two-component system sensor histidine kinase RstB, at 2,837,627 to 2,838,931 _13305 IAI46_13310: IAI46_13310 - carboxypeptidase M32, at 2,838,998 to 2,840,494 _13310 Position (kb) 2837 2838 2839Strain fitness (log2 ratio) -1 0 1at 2836.661 kb on - strand, within IAI46_13295at 2836.910 kb on + strandat 2836.979 kb on + strand, within IAI46_13300at 2837.064 kb on - strand, within IAI46_13300at 2837.481 kb on + strand, within IAI46_13300at 2837.481 kb on + strand, within IAI46_13300at 2837.538 kb on + strand, within IAI46_13300at 2837.539 kb on - strand, within IAI46_13300at 2837.582 kb on + strandat 2837.583 kb on - strandat 2837.706 kb on - strandat 2837.945 kb on + strand, within IAI46_13305at 2837.953 kb on + strand, within IAI46_13305at 2837.954 kb on - strand, within IAI46_13305at 2837.954 kb on - strand, within IAI46_13305at 2838.014 kb on + strand, within IAI46_13305at 2838.014 kb on + strand, within IAI46_13305at 2838.014 kb on + strand, within IAI46_13305at 2838.015 kb on - strand, within IAI46_13305at 2838.400 kb on + strand, within IAI46_13305at 2838.415 kb on + strand, within IAI46_13305at 2838.454 kb on + strand, within IAI46_13305at 2838.609 kb on + strand, within IAI46_13305at 2838.681 kb on + strand, within IAI46_13305at 2838.688 kb on - strand, within IAI46_13305at 2838.842 kb on + strandat 2838.842 kb on + strandat 2838.981 kb on + strandat 2839.012 kb on + strandat 2839.013 kb on - strandat 2839.013 kb on - strandat 2839.161 kb on + strand, within IAI46_13310at 2839.755 kb on - strand, within IAI46_13310

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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2,836,661 - IAI46_13295 0.76 -0.3
2,836,910 + +0.4
2,836,979 + IAI46_13300 0.10 +1.2
2,837,064 - IAI46_13300 0.22 -0.7
2,837,481 + IAI46_13300 0.79 +1.4
2,837,481 + IAI46_13300 0.79 -0.0
2,837,538 + IAI46_13300 0.87 +0.3
2,837,539 - IAI46_13300 0.87 +0.2
2,837,582 + -0.1
2,837,583 - -0.1
2,837,706 - -0.8
2,837,945 + IAI46_13305 0.24 -0.8
2,837,953 + IAI46_13305 0.25 +0.8
2,837,954 - IAI46_13305 0.25 +0.8
2,837,954 - IAI46_13305 0.25 -0.6
2,838,014 + IAI46_13305 0.30 +0.7
2,838,014 + IAI46_13305 0.30 -0.7
2,838,014 + IAI46_13305 0.30 -0.2
2,838,015 - IAI46_13305 0.30 +1.4
2,838,400 + IAI46_13305 0.59 -0.9
2,838,415 + IAI46_13305 0.60 -0.5
2,838,454 + IAI46_13305 0.63 +0.9
2,838,609 + IAI46_13305 0.75 +0.4
2,838,681 + IAI46_13305 0.81 -0.0
2,838,688 - IAI46_13305 0.81 +0.5
2,838,842 + +0.4
2,838,842 + -0.4
2,838,981 + -0.1
2,839,012 + -0.6
2,839,013 - +0.1
2,839,013 - -0.8
2,839,161 + IAI46_13310 0.11 -0.5
2,839,755 - IAI46_13310 0.51 -0.6

Or see this region's nucleotide sequence