Strain Fitness in Serratia liquefaciens MT49 around IAI46_11835

Experiment: dichromate 20 uM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_11830 and IAI46_11835 are separated by 66 nucleotidesIAI46_11835 and IAI46_11840 are separated by 203 nucleotidesIAI46_11840 and IAI46_11845 overlap by 8 nucleotides IAI46_11830: IAI46_11830 - 2,5-dihydroxypyridine 5,6-dioxygenase, at 2,499,887 to 2,500,945 _11830 IAI46_11835: IAI46_11835 - winged helix-turn-helix transcriptional regulator, at 2,501,012 to 2,501,485 _11835 IAI46_11840: IAI46_11840 - (2Fe-2S)-binding protein, at 2,501,689 to 2,502,231 _11840 IAI46_11845: IAI46_11845 - molybdopterin-dependent oxidoreductase, at 2,502,224 to 2,505,722 _11845 Position (kb) 2501 2502Strain fitness (log2 ratio) -1 0 1 2at 2500.042 kb on + strand, within IAI46_11830at 2500.110 kb on - strand, within IAI46_11830at 2500.348 kb on - strand, within IAI46_11830at 2500.418 kb on + strand, within IAI46_11830at 2500.506 kb on + strand, within IAI46_11830at 2500.753 kb on + strand, within IAI46_11830at 2500.772 kb on + strand, within IAI46_11830at 2500.956 kb on - strandat 2500.972 kb on - strandat 2500.972 kb on - strandat 2500.974 kb on + strandat 2500.993 kb on - strandat 2501.006 kb on - strandat 2501.068 kb on + strand, within IAI46_11835at 2501.167 kb on + strand, within IAI46_11835at 2501.208 kb on + strand, within IAI46_11835at 2501.431 kb on + strand, within IAI46_11835at 2501.431 kb on + strand, within IAI46_11835at 2501.434 kb on - strand, within IAI46_11835at 2501.455 kb on + strandat 2501.765 kb on + strand, within IAI46_11840at 2501.891 kb on + strand, within IAI46_11840at 2502.090 kb on - strand, within IAI46_11840at 2502.265 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
remove
2,500,042 + IAI46_11830 0.15 -0.1
2,500,110 - IAI46_11830 0.21 -1.0
2,500,348 - IAI46_11830 0.44 +0.2
2,500,418 + IAI46_11830 0.50 +1.6
2,500,506 + IAI46_11830 0.58 -0.8
2,500,753 + IAI46_11830 0.82 -0.5
2,500,772 + IAI46_11830 0.84 +2.0
2,500,956 - -1.1
2,500,972 - -1.6
2,500,972 - -0.2
2,500,974 + -1.6
2,500,993 - -0.0
2,501,006 - -0.6
2,501,068 + IAI46_11835 0.12 -0.2
2,501,167 + IAI46_11835 0.33 +1.4
2,501,208 + IAI46_11835 0.41 -0.3
2,501,431 + IAI46_11835 0.88 +0.0
2,501,431 + IAI46_11835 0.88 +0.9
2,501,434 - IAI46_11835 0.89 -1.1
2,501,455 + +1.4
2,501,765 + IAI46_11840 0.14 +0.6
2,501,891 + IAI46_11840 0.37 +0.4
2,502,090 - IAI46_11840 0.74 +0.5
2,502,265 - +0.4

Or see this region's nucleotide sequence