Strain Fitness in Serratia liquefaciens MT49 around IAI46_11650

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11645 and IAI46_11650 are separated by 525 nucleotidesIAI46_11650 and IAI46_11655 are separated by 261 nucleotides IAI46_11645: IAI46_11645 - mannose-6-phosphate isomerase, at 2,457,685 to 2,458,863 _11645 IAI46_11650: IAI46_11650 - hypothetical protein, at 2,459,389 to 2,459,721 _11650 IAI46_11655: IAI46_11655 - class II fumarate hydratase, at 2,459,983 to 2,461,380 _11655 Position (kb) 2459 2460Strain fitness (log2 ratio) -1 0 1 2at 2458.456 kb on + strand, within IAI46_11645at 2458.457 kb on - strand, within IAI46_11645at 2458.488 kb on - strand, within IAI46_11645at 2458.491 kb on + strand, within IAI46_11645at 2458.680 kb on + strand, within IAI46_11645at 2458.797 kb on - strandat 2458.833 kb on - strandat 2458.870 kb on - strandat 2459.007 kb on + strandat 2459.008 kb on - strandat 2459.010 kb on - strandat 2459.015 kb on - strandat 2459.015 kb on - strandat 2459.015 kb on - strandat 2459.050 kb on - strandat 2459.052 kb on - strandat 2459.059 kb on + strandat 2459.084 kb on - strandat 2459.111 kb on - strandat 2459.275 kb on - strandat 2459.335 kb on + strandat 2459.335 kb on + strandat 2459.336 kb on - strandat 2459.468 kb on - strand, within IAI46_11650at 2459.507 kb on + strand, within IAI46_11650at 2459.507 kb on + strand, within IAI46_11650at 2459.574 kb on + strand, within IAI46_11650at 2459.694 kb on + strandat 2459.703 kb on + strandat 2459.719 kb on + strandat 2459.741 kb on + strandat 2459.741 kb on + strandat 2459.837 kb on + strandat 2459.892 kb on + strandat 2459.944 kb on + strandat 2460.013 kb on - strandat 2460.237 kb on + strand, within IAI46_11655at 2460.237 kb on + strand, within IAI46_11655at 2460.238 kb on - strand, within IAI46_11655at 2460.297 kb on + strand, within IAI46_11655at 2460.297 kb on + strand, within IAI46_11655at 2460.297 kb on + strand, within IAI46_11655at 2460.486 kb on + strand, within IAI46_11655at 2460.487 kb on - strand, within IAI46_11655at 2460.645 kb on + strand, within IAI46_11655at 2460.646 kb on - strand, within IAI46_11655at 2460.693 kb on + strand, within IAI46_11655at 2460.694 kb on - strand, within IAI46_11655

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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2,458,456 + IAI46_11645 0.65 -1.3
2,458,457 - IAI46_11645 0.65 -0.1
2,458,488 - IAI46_11645 0.68 -0.5
2,458,491 + IAI46_11645 0.68 +0.8
2,458,680 + IAI46_11645 0.84 -1.0
2,458,797 - -1.1
2,458,833 - +0.3
2,458,870 - -0.5
2,459,007 + +0.1
2,459,008 - -0.2
2,459,010 - +0.0
2,459,015 - +0.6
2,459,015 - +0.7
2,459,015 - +1.0
2,459,050 - -0.4
2,459,052 - +0.5
2,459,059 + -0.3
2,459,084 - +0.5
2,459,111 - +0.2
2,459,275 - -1.2
2,459,335 + -0.6
2,459,335 + -0.6
2,459,336 - -0.2
2,459,468 - IAI46_11650 0.24 -0.9
2,459,507 + IAI46_11650 0.35 +0.2
2,459,507 + IAI46_11650 0.35 +1.4
2,459,574 + IAI46_11650 0.56 +0.2
2,459,694 + +0.0
2,459,703 + +0.1
2,459,719 + +0.0
2,459,741 + +0.6
2,459,741 + -0.2
2,459,837 + +0.2
2,459,892 + +0.5
2,459,944 + +0.7
2,460,013 - +1.2
2,460,237 + IAI46_11655 0.18 +0.7
2,460,237 + IAI46_11655 0.18 +0.3
2,460,238 - IAI46_11655 0.18 -0.5
2,460,297 + IAI46_11655 0.22 -0.6
2,460,297 + IAI46_11655 0.22 +1.1
2,460,297 + IAI46_11655 0.22 +0.7
2,460,486 + IAI46_11655 0.36 +1.7
2,460,487 - IAI46_11655 0.36 +0.3
2,460,645 + IAI46_11655 0.47 -1.1
2,460,646 - IAI46_11655 0.47 +2.0
2,460,693 + IAI46_11655 0.51 -0.1
2,460,694 - IAI46_11655 0.51 +0.4

Or see this region's nucleotide sequence