Experiment: dichromate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_11620 and IAI46_11625 are separated by 76 nucleotides IAI46_11625 and IAI46_11630 are separated by 163 nucleotides IAI46_11630 and IAI46_11635 are separated by 101 nucleotides
IAI46_11620: IAI46_11620 - MFS transporter, at 2,451,631 to 2,452,785
_11620
IAI46_11625: IAI46_11625 - TetR/AcrR family transcriptional regulator, at 2,452,862 to 2,453,464
_11625
IAI46_11630: IAI46_11630 - LysR family transcriptional regulator, at 2,453,628 to 2,454,557
_11630
IAI46_11635: IAI46_11635 - beta-lactamase family protein, at 2,454,659 to 2,455,825
_11635
Position (kb)
2453
2454
2455 Strain fitness (log2 ratio)
-2
-1
0
1 at 2452.646 kb on + strand, within IAI46_11620 at 2452.649 kb on + strand, within IAI46_11620 at 2452.704 kb on + strand at 2452.727 kb on - strand at 2452.766 kb on - strand at 2452.768 kb on - strand at 2452.768 kb on - strand at 2452.833 kb on - strand at 2452.866 kb on - strand at 2452.948 kb on - strand, within IAI46_11625 at 2452.974 kb on + strand, within IAI46_11625 at 2453.190 kb on - strand, within IAI46_11625 at 2453.306 kb on - strand, within IAI46_11625 at 2453.306 kb on - strand, within IAI46_11625 at 2453.308 kb on - strand, within IAI46_11625 at 2453.309 kb on + strand, within IAI46_11625 at 2453.309 kb on + strand, within IAI46_11625 at 2453.310 kb on - strand, within IAI46_11625 at 2453.310 kb on - strand, within IAI46_11625 at 2453.442 kb on + strand at 2453.500 kb on - strand at 2453.502 kb on - strand at 2453.502 kb on - strand at 2453.505 kb on - strand at 2453.815 kb on - strand, within IAI46_11630 at 2453.867 kb on + strand, within IAI46_11630 at 2454.273 kb on + strand, within IAI46_11630 at 2454.667 kb on - strand at 2454.731 kb on - strand at 2454.866 kb on + strand, within IAI46_11635 at 2454.866 kb on + strand, within IAI46_11635 at 2454.872 kb on - strand, within IAI46_11635 at 2455.072 kb on + strand, within IAI46_11635 at 2455.081 kb on + strand, within IAI46_11635 at 2455.273 kb on + strand, within IAI46_11635 at 2455.348 kb on + strand, within IAI46_11635 at 2455.349 kb on - strand, within IAI46_11635 at 2455.350 kb on + strand, within IAI46_11635
Per-strain Table
Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic remove 2,452,646 + IAI46_11620 0.88 +1.2 2,452,649 + IAI46_11620 0.88 +0.2 2,452,704 + -1.4 2,452,727 - +0.8 2,452,766 - -0.4 2,452,768 - -1.3 2,452,768 - +0.2 2,452,833 - +0.9 2,452,866 - -0.4 2,452,948 - IAI46_11625 0.14 +0.7 2,452,974 + IAI46_11625 0.19 -2.1 2,453,190 - IAI46_11625 0.54 +0.7 2,453,306 - IAI46_11625 0.74 -0.7 2,453,306 - IAI46_11625 0.74 +0.3 2,453,308 - IAI46_11625 0.74 +0.1 2,453,309 + IAI46_11625 0.74 -0.2 2,453,309 + IAI46_11625 0.74 -2.2 2,453,310 - IAI46_11625 0.74 +0.2 2,453,310 - IAI46_11625 0.74 -0.7 2,453,442 + -1.9 2,453,500 - +1.7 2,453,502 - -0.8 2,453,502 - +0.7 2,453,505 - +0.4 2,453,815 - IAI46_11630 0.20 +1.6 2,453,867 + IAI46_11630 0.26 -0.2 2,454,273 + IAI46_11630 0.69 -0.1 2,454,667 - +0.4 2,454,731 - -0.6 2,454,866 + IAI46_11635 0.18 +0.6 2,454,866 + IAI46_11635 0.18 -0.1 2,454,872 - IAI46_11635 0.18 -0.3 2,455,072 + IAI46_11635 0.35 +0.8 2,455,081 + IAI46_11635 0.36 +0.4 2,455,273 + IAI46_11635 0.53 -0.4 2,455,348 + IAI46_11635 0.59 -0.9 2,455,349 - IAI46_11635 0.59 +0.6 2,455,350 + IAI46_11635 0.59 -0.4
Or see this region's nucleotide sequence