Strain Fitness in Serratia liquefaciens MT49 around IAI46_09820

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09810 and IAI46_09815 overlap by 11 nucleotidesIAI46_09815 and IAI46_09820 overlap by 1 nucleotidesIAI46_09820 and IAI46_09825 are separated by 14 nucleotides IAI46_09810: IAI46_09810 - endolytic transglycosylase MltG, at 2,077,146 to 2,078,171 _09810 IAI46_09815: IAI46_09815 - dTMP kinase, at 2,078,161 to 2,078,796 _09815 IAI46_09820: IAI46_09820 - DNA polymerase III subunit delta', at 2,078,796 to 2,079,803 _09820 IAI46_09825: IAI46_09825 - metal-dependent hydrolase, at 2,079,818 to 2,080,594 _09825 Position (kb) 2078 2079 2080Strain fitness (log2 ratio) -2 -1 0 1 2at 2077.873 kb on + strand, within IAI46_09810at 2077.914 kb on + strand, within IAI46_09810at 2077.914 kb on + strand, within IAI46_09810at 2077.914 kb on + strand, within IAI46_09810at 2077.914 kb on + strand, within IAI46_09810at 2077.914 kb on + strand, within IAI46_09810at 2077.914 kb on + strand, within IAI46_09810at 2077.914 kb on + strand, within IAI46_09810at 2077.968 kb on + strand, within IAI46_09810at 2077.968 kb on + strand, within IAI46_09810at 2077.968 kb on + strand, within IAI46_09810at 2078.117 kb on + strandat 2079.814 kb on + strandat 2079.814 kb on + strandat 2079.815 kb on - strandat 2079.825 kb on + strandat 2079.828 kb on + strandat 2079.829 kb on - strandat 2080.047 kb on - strand, within IAI46_09825at 2080.113 kb on - strand, within IAI46_09825at 2080.335 kb on - strand, within IAI46_09825at 2080.335 kb on - strand, within IAI46_09825at 2080.485 kb on - strand, within IAI46_09825at 2080.505 kb on + strand, within IAI46_09825at 2080.505 kb on + strand, within IAI46_09825at 2080.575 kb on + strandat 2080.575 kb on + strandat 2080.576 kb on - strandat 2080.609 kb on + strandat 2080.610 kb on - strandat 2080.610 kb on - strandat 2080.617 kb on + strandat 2080.618 kb on - strandat 2080.618 kb on - strandat 2080.618 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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2,077,873 + IAI46_09810 0.71 -2.1
2,077,914 + IAI46_09810 0.75 -1.0
2,077,914 + IAI46_09810 0.75 -0.2
2,077,914 + IAI46_09810 0.75 +1.0
2,077,914 + IAI46_09810 0.75 +1.0
2,077,914 + IAI46_09810 0.75 +0.7
2,077,914 + IAI46_09810 0.75 +0.2
2,077,914 + IAI46_09810 0.75 -0.2
2,077,968 + IAI46_09810 0.80 -0.0
2,077,968 + IAI46_09810 0.80 +0.4
2,077,968 + IAI46_09810 0.80 -0.2
2,078,117 + +0.2
2,079,814 + -0.7
2,079,814 + -0.8
2,079,815 - +0.3
2,079,825 + +0.3
2,079,828 + -0.8
2,079,829 - -0.2
2,080,047 - IAI46_09825 0.29 -0.6
2,080,113 - IAI46_09825 0.38 +0.2
2,080,335 - IAI46_09825 0.67 -0.7
2,080,335 - IAI46_09825 0.67 +0.2
2,080,485 - IAI46_09825 0.86 -1.9
2,080,505 + IAI46_09825 0.88 +0.5
2,080,505 + IAI46_09825 0.88 -0.3
2,080,575 + +0.5
2,080,575 + +1.0
2,080,576 - -0.6
2,080,609 + -0.5
2,080,610 - -0.0
2,080,610 - -0.3
2,080,617 + +1.0
2,080,618 - -0.0
2,080,618 - +2.5
2,080,618 - -0.8

Or see this region's nucleotide sequence