Strain Fitness in Serratia liquefaciens MT49 around IAI46_09795

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09785 and IAI46_09790 are separated by 11 nucleotidesIAI46_09790 and IAI46_09795 are separated by 154 nucleotidesIAI46_09795 and IAI46_09800 are separated by 82 nucleotides IAI46_09785: IAI46_09785 - ACP S-malonyltransferase, at 2,072,773 to 2,073,702 _09785 IAI46_09790: IAI46_09790 - 3-oxoacyl-ACP reductase FabG, at 2,073,714 to 2,074,448 _09790 IAI46_09795: IAI46_09795 - acyl carrier protein, at 2,074,603 to 2,074,839 _09795 IAI46_09800: IAI46_09800 - beta-ketoacyl-ACP synthase II, at 2,074,922 to 2,076,163 _09800 Position (kb) 2074 2075Strain fitness (log2 ratio) -2 -1 0 1at 2073.633 kb on + strandat 2074.499 kb on + strandat 2074.882 kb on + strandat 2074.888 kb on + strandat 2074.928 kb on - strandat 2074.983 kb on + strandat 2075.340 kb on + strand, within IAI46_09800at 2075.340 kb on + strand, within IAI46_09800at 2075.340 kb on + strand, within IAI46_09800at 2075.341 kb on - strand, within IAI46_09800at 2075.365 kb on + strand, within IAI46_09800at 2075.365 kb on + strand, within IAI46_09800at 2075.366 kb on - strand, within IAI46_09800at 2075.372 kb on + strand, within IAI46_09800at 2075.372 kb on + strand, within IAI46_09800at 2075.372 kb on + strand, within IAI46_09800at 2075.372 kb on + strand, within IAI46_09800at 2075.372 kb on + strand, within IAI46_09800at 2075.414 kb on - strand, within IAI46_09800at 2075.449 kb on + strand, within IAI46_09800at 2075.787 kb on + strand, within IAI46_09800at 2075.822 kb on - strand, within IAI46_09800

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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2,073,633 + +1.2
2,074,499 + -0.8
2,074,882 + +0.2
2,074,888 + +1.0
2,074,928 - +0.5
2,074,983 + -0.4
2,075,340 + IAI46_09800 0.34 -1.0
2,075,340 + IAI46_09800 0.34 +0.6
2,075,340 + IAI46_09800 0.34 +1.0
2,075,341 - IAI46_09800 0.34 +1.0
2,075,365 + IAI46_09800 0.36 +0.4
2,075,365 + IAI46_09800 0.36 +1.0
2,075,366 - IAI46_09800 0.36 -1.8
2,075,372 + IAI46_09800 0.36 +0.5
2,075,372 + IAI46_09800 0.36 +0.9
2,075,372 + IAI46_09800 0.36 -0.7
2,075,372 + IAI46_09800 0.36 -1.0
2,075,372 + IAI46_09800 0.36 +0.1
2,075,414 - IAI46_09800 0.40 -0.5
2,075,449 + IAI46_09800 0.42 -0.0
2,075,787 + IAI46_09800 0.70 -1.5
2,075,822 - IAI46_09800 0.72 +0.3

Or see this region's nucleotide sequence