Strain Fitness in Serratia liquefaciens MT49 around IAI46_09245

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09240 and IAI46_09245 are separated by 402 nucleotidesIAI46_09245 and IAI46_09250 are separated by 109 nucleotidesIAI46_09250 and IAI46_09255 overlap by 8 nucleotides IAI46_09240: IAI46_09240 - SIS domain-containing protein, at 1,975,862 to 1,977,004 _09240 IAI46_09245: IAI46_09245 - PTS sugar transporter subunit IIB, at 1,977,407 to 1,977,712 _09245 IAI46_09250: IAI46_09250 - PTS lactose/cellobiose transporter subunit IIA, at 1,977,822 to 1,978,148 _09250 IAI46_09255: IAI46_09255 - 6-phospho-beta-glucosidase, at 1,978,141 to 1,979,442 _09255 Position (kb) 1977 1978Strain fitness (log2 ratio) -1 0 1at 1976.619 kb on + strand, within IAI46_09240at 1976.635 kb on + strand, within IAI46_09240at 1976.636 kb on - strand, within IAI46_09240at 1976.728 kb on + strand, within IAI46_09240at 1976.757 kb on - strand, within IAI46_09240at 1976.764 kb on + strand, within IAI46_09240at 1976.911 kb on + strandat 1976.912 kb on - strandat 1976.930 kb on + strandat 1977.095 kb on + strandat 1977.341 kb on + strandat 1977.341 kb on + strandat 1977.342 kb on - strandat 1977.424 kb on - strandat 1977.424 kb on - strandat 1977.561 kb on + strand, within IAI46_09245at 1977.562 kb on - strand, within IAI46_09245at 1977.584 kb on + strand, within IAI46_09245at 1977.657 kb on - strand, within IAI46_09245at 1977.705 kb on + strandat 1977.713 kb on + strandat 1977.740 kb on + strandat 1977.740 kb on + strandat 1977.747 kb on + strandat 1977.748 kb on - strandat 1977.751 kb on + strandat 1977.769 kb on + strandat 1978.147 kb on - strandat 1978.158 kb on - strandat 1978.213 kb on + strandat 1978.247 kb on + strandat 1978.248 kb on - strandat 1978.248 kb on - strandat 1978.253 kb on + strandat 1978.385 kb on + strand, within IAI46_09255at 1978.386 kb on - strand, within IAI46_09255at 1978.594 kb on - strand, within IAI46_09255at 1978.652 kb on + strand, within IAI46_09255at 1978.652 kb on + strand, within IAI46_09255at 1978.653 kb on - strand, within IAI46_09255

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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1,976,619 + IAI46_09240 0.66 -1.0
1,976,635 + IAI46_09240 0.68 -0.7
1,976,636 - IAI46_09240 0.68 -0.1
1,976,728 + IAI46_09240 0.76 +0.3
1,976,757 - IAI46_09240 0.78 -0.3
1,976,764 + IAI46_09240 0.79 +0.4
1,976,911 + -0.1
1,976,912 - +0.5
1,976,930 + +0.6
1,977,095 + -0.7
1,977,341 + -0.0
1,977,341 + +0.8
1,977,342 - -0.0
1,977,424 - +1.0
1,977,424 - -1.6
1,977,561 + IAI46_09245 0.50 +0.1
1,977,562 - IAI46_09245 0.51 +0.2
1,977,584 + IAI46_09245 0.58 -0.4
1,977,657 - IAI46_09245 0.82 -1.2
1,977,705 + -0.2
1,977,713 + +0.0
1,977,740 + -1.1
1,977,740 + +1.4
1,977,747 + -0.3
1,977,748 - +1.6
1,977,751 + +0.5
1,977,769 + +0.2
1,978,147 - -1.2
1,978,158 - +1.2
1,978,213 + +1.2
1,978,247 + +0.2
1,978,248 - -0.6
1,978,248 - -1.0
1,978,253 + +0.0
1,978,385 + IAI46_09255 0.19 -0.7
1,978,386 - IAI46_09255 0.19 -0.8
1,978,594 - IAI46_09255 0.35 +0.3
1,978,652 + IAI46_09255 0.39 +0.9
1,978,652 + IAI46_09255 0.39 -1.1
1,978,653 - IAI46_09255 0.39 +0.8

Or see this region's nucleotide sequence