Strain Fitness in Serratia liquefaciens MT49 around IAI46_08165

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08160 and IAI46_08165 are separated by 203 nucleotidesIAI46_08165 and IAI46_08170 are separated by 7 nucleotides IAI46_08160: IAI46_08160 - NADP-dependent phosphogluconate dehydrogenase, at 1,735,854 to 1,737,260 _08160 IAI46_08165: IAI46_08165 - glycosyltransferase, at 1,737,464 to 1,739,353 _08165 IAI46_08170: IAI46_08170 - HAD hydrolase-like protein, at 1,739,361 to 1,741,406 _08170 Position (kb) 1737 1738 1739 1740Strain fitness (log2 ratio) -2 -1 0 1 2at 1737.192 kb on + strandat 1737.235 kb on + strandat 1737.329 kb on + strandat 1737.329 kb on + strandat 1737.348 kb on + strandat 1737.355 kb on - strandat 1737.371 kb on + strandat 1737.550 kb on - strandat 1737.756 kb on + strand, within IAI46_08165at 1737.982 kb on + strand, within IAI46_08165at 1738.148 kb on - strand, within IAI46_08165at 1738.161 kb on - strand, within IAI46_08165at 1738.211 kb on - strand, within IAI46_08165at 1738.426 kb on + strand, within IAI46_08165at 1738.664 kb on + strand, within IAI46_08165at 1738.665 kb on - strand, within IAI46_08165at 1738.678 kb on - strand, within IAI46_08165at 1738.731 kb on + strand, within IAI46_08165at 1738.991 kb on - strand, within IAI46_08165at 1739.041 kb on + strand, within IAI46_08165at 1739.049 kb on + strand, within IAI46_08165at 1739.094 kb on + strand, within IAI46_08165at 1739.221 kb on + strandat 1739.413 kb on + strandat 1739.466 kb on - strandat 1739.928 kb on + strand, within IAI46_08170at 1740.023 kb on + strand, within IAI46_08170at 1740.195 kb on + strand, within IAI46_08170at 1740.317 kb on + strand, within IAI46_08170

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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1,737,192 + +1.8
1,737,235 + -0.2
1,737,329 + +0.8
1,737,329 + +1.1
1,737,348 + -0.3
1,737,355 - +0.5
1,737,371 + -0.3
1,737,550 - -1.0
1,737,756 + IAI46_08165 0.15 +1.1
1,737,982 + IAI46_08165 0.27 +0.4
1,738,148 - IAI46_08165 0.36 -1.6
1,738,161 - IAI46_08165 0.37 +0.3
1,738,211 - IAI46_08165 0.40 -0.2
1,738,426 + IAI46_08165 0.51 -0.8
1,738,664 + IAI46_08165 0.63 +0.3
1,738,665 - IAI46_08165 0.64 -0.9
1,738,678 - IAI46_08165 0.64 +0.6
1,738,731 + IAI46_08165 0.67 +0.5
1,738,991 - IAI46_08165 0.81 +0.9
1,739,041 + IAI46_08165 0.83 +1.5
1,739,049 + IAI46_08165 0.84 +0.1
1,739,094 + IAI46_08165 0.86 -0.7
1,739,221 + -2.0
1,739,413 + -0.3
1,739,466 - -1.2
1,739,928 + IAI46_08170 0.28 -0.1
1,740,023 + IAI46_08170 0.32 -0.2
1,740,195 + IAI46_08170 0.41 +0.6
1,740,317 + IAI46_08170 0.47 +0.3

Or see this region's nucleotide sequence