Strain Fitness in Serratia liquefaciens MT49 around IAI46_07630

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07620 and IAI46_07625 are separated by 14 nucleotidesIAI46_07625 and IAI46_07630 are separated by 140 nucleotidesIAI46_07630 and IAI46_07635 overlap by 4 nucleotides IAI46_07620: IAI46_07620 - cytochrome b/b6 domain-containing protein, at 1,608,401 to 1,609,009 _07620 IAI46_07625: IAI46_07625 - hypothetical protein, at 1,609,024 to 1,609,650 _07625 IAI46_07630: IAI46_07630 - heavy metal response regulator transcription factor, at 1,609,791 to 1,610,462 _07630 IAI46_07635: IAI46_07635 - heavy metal sensor histidine kinase, at 1,610,459 to 1,611,883 _07635 Position (kb) 1609 1610 1611Strain fitness (log2 ratio) -3 -2 -1 0 1at 1608.904 kb on - strand, within IAI46_07620at 1608.950 kb on - strandat 1609.026 kb on - strandat 1609.026 kb on - strandat 1609.026 kb on - strandat 1609.026 kb on - strandat 1609.086 kb on + strandat 1609.114 kb on - strand, within IAI46_07625at 1609.420 kb on - strand, within IAI46_07625at 1609.621 kb on + strandat 1609.650 kb on + strandat 1609.650 kb on + strandat 1609.650 kb on + strandat 1609.728 kb on - strandat 1609.728 kb on - strandat 1609.758 kb on + strandat 1609.759 kb on - strandat 1609.761 kb on + strandat 1609.798 kb on + strandat 1609.799 kb on - strandat 1609.799 kb on - strandat 1609.834 kb on - strandat 1609.834 kb on - strandat 1609.864 kb on - strand, within IAI46_07630at 1609.883 kb on + strand, within IAI46_07630at 1609.884 kb on - strand, within IAI46_07630at 1609.945 kb on + strand, within IAI46_07630at 1609.946 kb on - strand, within IAI46_07630at 1610.087 kb on + strand, within IAI46_07630at 1610.087 kb on + strand, within IAI46_07630at 1610.150 kb on - strand, within IAI46_07630at 1610.166 kb on + strand, within IAI46_07630at 1610.167 kb on - strand, within IAI46_07630at 1610.170 kb on + strand, within IAI46_07630at 1610.170 kb on + strand, within IAI46_07630at 1610.170 kb on + strand, within IAI46_07630at 1610.170 kb on + strand, within IAI46_07630at 1610.170 kb on + strand, within IAI46_07630at 1610.171 kb on - strand, within IAI46_07630at 1610.171 kb on - strand, within IAI46_07630at 1610.204 kb on + strand, within IAI46_07630at 1610.252 kb on + strand, within IAI46_07630at 1610.290 kb on + strand, within IAI46_07630at 1610.290 kb on + strand, within IAI46_07630at 1610.290 kb on + strand, within IAI46_07630at 1610.291 kb on - strand, within IAI46_07630at 1610.291 kb on - strand, within IAI46_07630at 1610.568 kb on - strandat 1610.568 kb on - strandat 1610.630 kb on + strand, within IAI46_07635at 1610.630 kb on + strand, within IAI46_07635at 1610.630 kb on + strand, within IAI46_07635at 1610.630 kb on + strand, within IAI46_07635at 1611.197 kb on + strand, within IAI46_07635at 1611.197 kb on + strand, within IAI46_07635at 1611.353 kb on - strand, within IAI46_07635at 1611.379 kb on - strand, within IAI46_07635

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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1,608,904 - IAI46_07620 0.83 +1.4
1,608,950 - +0.7
1,609,026 - -0.9
1,609,026 - +0.5
1,609,026 - +1.1
1,609,026 - -0.6
1,609,086 + -0.6
1,609,114 - IAI46_07625 0.14 +1.1
1,609,420 - IAI46_07625 0.63 -0.3
1,609,621 + +0.6
1,609,650 + +0.6
1,609,650 + +0.2
1,609,650 + +0.3
1,609,728 - -0.3
1,609,728 - -0.5
1,609,758 + -0.9
1,609,759 - -1.1
1,609,761 + -0.5
1,609,798 + -2.8
1,609,799 - -0.1
1,609,799 - -0.1
1,609,834 - +0.3
1,609,834 - -0.3
1,609,864 - IAI46_07630 0.11 -0.8
1,609,883 + IAI46_07630 0.14 +1.0
1,609,884 - IAI46_07630 0.14 +1.2
1,609,945 + IAI46_07630 0.23 -1.3
1,609,946 - IAI46_07630 0.23 +0.0
1,610,087 + IAI46_07630 0.44 +0.2
1,610,087 + IAI46_07630 0.44 +0.9
1,610,150 - IAI46_07630 0.53 +0.6
1,610,166 + IAI46_07630 0.56 +0.1
1,610,167 - IAI46_07630 0.56 +0.1
1,610,170 + IAI46_07630 0.56 -0.3
1,610,170 + IAI46_07630 0.56 -0.4
1,610,170 + IAI46_07630 0.56 -2.0
1,610,170 + IAI46_07630 0.56 +0.4
1,610,170 + IAI46_07630 0.56 +0.6
1,610,171 - IAI46_07630 0.57 +0.8
1,610,171 - IAI46_07630 0.57 +0.2
1,610,204 + IAI46_07630 0.61 +0.0
1,610,252 + IAI46_07630 0.69 -0.2
1,610,290 + IAI46_07630 0.74 -2.0
1,610,290 + IAI46_07630 0.74 -1.3
1,610,290 + IAI46_07630 0.74 -0.2
1,610,291 - IAI46_07630 0.74 -0.3
1,610,291 - IAI46_07630 0.74 +0.0
1,610,568 - +0.1
1,610,568 - -0.7
1,610,630 + IAI46_07635 0.12 +0.5
1,610,630 + IAI46_07635 0.12 +0.0
1,610,630 + IAI46_07635 0.12 +1.1
1,610,630 + IAI46_07635 0.12 +0.3
1,611,197 + IAI46_07635 0.52 +0.2
1,611,197 + IAI46_07635 0.52 +0.9
1,611,353 - IAI46_07635 0.63 +0.4
1,611,379 - IAI46_07635 0.65 +0.9

Or see this region's nucleotide sequence