Experiment: dichromate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_06785 and IAI46_06790 are separated by 127 nucleotides IAI46_06790 and IAI46_06795 are separated by 75 nucleotides IAI46_06795 and IAI46_06800 are separated by 2 nucleotides
IAI46_06785: IAI46_06785 - PACE efflux transporter, at 1,442,002 to 1,442,439
_06785
IAI46_06790: IAI46_06790 - LysR family transcriptional regulator, at 1,442,567 to 1,443,460
_06790
IAI46_06795: IAI46_06795 - LysE family transporter, at 1,443,536 to 1,444,162
_06795
IAI46_06800: IAI46_06800 - DedA family protein, at 1,444,165 to 1,444,728
_06800
Position (kb)
1442
1443
1444 Strain fitness (log2 ratio)
-2
-1
0
1 at 1441.904 kb on - strand at 1441.929 kb on + strand at 1441.932 kb on + strand at 1441.932 kb on + strand at 1441.933 kb on - strand at 1441.933 kb on - strand at 1441.933 kb on - strand at 1441.978 kb on + strand at 1441.978 kb on + strand at 1441.979 kb on - strand at 1441.979 kb on - strand at 1442.047 kb on + strand, within IAI46_06785 at 1442.067 kb on + strand, within IAI46_06785 at 1442.098 kb on + strand, within IAI46_06785 at 1442.098 kb on + strand, within IAI46_06785 at 1442.099 kb on - strand, within IAI46_06785 at 1442.136 kb on + strand, within IAI46_06785 at 1442.171 kb on + strand, within IAI46_06785 at 1442.172 kb on - strand, within IAI46_06785 at 1442.180 kb on - strand, within IAI46_06785 at 1442.185 kb on + strand, within IAI46_06785 at 1442.211 kb on + strand, within IAI46_06785 at 1442.221 kb on - strand, within IAI46_06785 at 1442.221 kb on - strand, within IAI46_06785 at 1442.227 kb on - strand, within IAI46_06785 at 1442.277 kb on - strand, within IAI46_06785 at 1442.308 kb on - strand, within IAI46_06785 at 1442.399 kb on + strand at 1442.400 kb on - strand at 1442.400 kb on - strand at 1442.411 kb on + strand at 1442.411 kb on + strand at 1442.412 kb on - strand at 1442.440 kb on + strand at 1442.440 kb on + strand at 1442.440 kb on + strand at 1442.440 kb on + strand at 1442.441 kb on - strand at 1442.441 kb on - strand at 1442.506 kb on + strand at 1442.506 kb on + strand at 1442.524 kb on + strand at 1442.655 kb on + strand at 1442.687 kb on - strand, within IAI46_06790 at 1442.797 kb on + strand, within IAI46_06790 at 1442.936 kb on - strand, within IAI46_06790 at 1442.936 kb on - strand, within IAI46_06790 at 1442.974 kb on + strand, within IAI46_06790 at 1442.974 kb on + strand, within IAI46_06790 at 1442.975 kb on - strand, within IAI46_06790 at 1442.975 kb on - strand, within IAI46_06790 at 1442.975 kb on - strand, within IAI46_06790 at 1442.975 kb on - strand, within IAI46_06790 at 1442.975 kb on - strand, within IAI46_06790 at 1443.021 kb on + strand, within IAI46_06790 at 1443.021 kb on + strand, within IAI46_06790 at 1443.156 kb on + strand, within IAI46_06790 at 1443.157 kb on - strand, within IAI46_06790 at 1443.157 kb on - strand, within IAI46_06790 at 1443.310 kb on - strand, within IAI46_06790 at 1443.373 kb on - strand at 1443.500 kb on - strand at 1443.518 kb on + strand at 1443.616 kb on + strand, within IAI46_06795 at 1443.698 kb on - strand, within IAI46_06795 at 1443.987 kb on - strand, within IAI46_06795 at 1444.079 kb on + strand, within IAI46_06795 at 1444.079 kb on + strand, within IAI46_06795 at 1444.166 kb on + strand at 1444.167 kb on - strand at 1444.198 kb on + strand at 1444.199 kb on - strand at 1444.202 kb on - strand at 1444.299 kb on - strand, within IAI46_06800 at 1444.419 kb on - strand, within IAI46_06800 at 1444.422 kb on + strand, within IAI46_06800 at 1444.423 kb on - strand, within IAI46_06800 at 1444.423 kb on - strand, within IAI46_06800 at 1444.430 kb on - strand, within IAI46_06800
Per-strain Table
Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic remove 1,441,904 - -0.0 1,441,929 + -0.3 1,441,932 + +0.4 1,441,932 + -0.1 1,441,933 - +0.4 1,441,933 - -0.6 1,441,933 - -0.7 1,441,978 + +0.3 1,441,978 + +0.3 1,441,979 - +1.4 1,441,979 - +1.2 1,442,047 + IAI46_06785 0.10 +0.1 1,442,067 + IAI46_06785 0.15 +0.4 1,442,098 + IAI46_06785 0.22 +0.4 1,442,098 + IAI46_06785 0.22 -1.7 1,442,099 - IAI46_06785 0.22 +0.3 1,442,136 + IAI46_06785 0.31 +0.4 1,442,171 + IAI46_06785 0.39 -0.3 1,442,172 - IAI46_06785 0.39 -0.1 1,442,180 - IAI46_06785 0.41 +0.1 1,442,185 + IAI46_06785 0.42 +0.8 1,442,211 + IAI46_06785 0.48 -0.3 1,442,221 - IAI46_06785 0.50 +0.9 1,442,221 - IAI46_06785 0.50 +0.5 1,442,227 - IAI46_06785 0.51 -2.1 1,442,277 - IAI46_06785 0.63 -1.5 1,442,308 - IAI46_06785 0.70 +0.4 1,442,399 + -0.5 1,442,400 - -0.5 1,442,400 - -0.9 1,442,411 + +0.2 1,442,411 + -0.3 1,442,412 - -1.1 1,442,440 + -0.0 1,442,440 + -0.8 1,442,440 + -0.1 1,442,440 + -0.6 1,442,441 - -1.0 1,442,441 - +0.8 1,442,506 + -1.0 1,442,506 + +0.4 1,442,524 + +0.8 1,442,655 + +0.6 1,442,687 - IAI46_06790 0.13 +0.3 1,442,797 + IAI46_06790 0.26 +0.3 1,442,936 - IAI46_06790 0.41 -0.3 1,442,936 - IAI46_06790 0.41 +0.1 1,442,974 + IAI46_06790 0.46 -0.0 1,442,974 + IAI46_06790 0.46 -1.2 1,442,975 - IAI46_06790 0.46 +0.2 1,442,975 - IAI46_06790 0.46 -0.7 1,442,975 - IAI46_06790 0.46 -0.2 1,442,975 - IAI46_06790 0.46 +0.2 1,442,975 - IAI46_06790 0.46 +0.7 1,443,021 + IAI46_06790 0.51 +0.4 1,443,021 + IAI46_06790 0.51 +0.8 1,443,156 + IAI46_06790 0.66 +0.5 1,443,157 - IAI46_06790 0.66 +0.9 1,443,157 - IAI46_06790 0.66 +0.1 1,443,310 - IAI46_06790 0.83 -1.2 1,443,373 - -1.5 1,443,500 - +0.4 1,443,518 + -0.4 1,443,616 + IAI46_06795 0.13 +0.2 1,443,698 - IAI46_06795 0.26 -0.2 1,443,987 - IAI46_06795 0.72 -0.7 1,444,079 + IAI46_06795 0.87 +0.3 1,444,079 + IAI46_06795 0.87 -0.4 1,444,166 + -0.8 1,444,167 - +1.0 1,444,198 + +1.6 1,444,199 - +0.7 1,444,202 - +0.6 1,444,299 - IAI46_06800 0.24 -1.0 1,444,419 - IAI46_06800 0.45 -0.1 1,444,422 + IAI46_06800 0.46 +0.4 1,444,423 - IAI46_06800 0.46 -2.2 1,444,423 - IAI46_06800 0.46 +0.6 1,444,430 - IAI46_06800 0.47 +1.2
Or see this region's nucleotide sequence