Experiment: dichromate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_04640 and IAI46_04645 overlap by 8 nucleotides IAI46_04645 and IAI46_04650 are separated by 90 nucleotides IAI46_04650 and IAI46_04655 are separated by 115 nucleotides
IAI46_04640: IAI46_04640 - ABC transporter substrate-binding protein, at 994,756 to 995,871
_04640
IAI46_04645: IAI46_04645 - TonB-dependent siderophore receptor, at 995,864 to 997,993
_04645
IAI46_04650: IAI46_04650 - GNAT family N-acetyltransferase, at 998,084 to 998,602
_04650
IAI46_04655: IAI46_04655 - shikimate kinase AroL, at 998,718 to 999,242
_04655
Position (kb) 995
996
997
998 Strain fitness (log2 ratio) -2
-1
0
1
2 at 994.903 kb on + strand, within IAI46_04640 at 994.903 kb on + strand, within IAI46_04640 at 994.903 kb on + strand, within IAI46_04640 at 994.903 kb on + strand, within IAI46_04640 at 994.904 kb on - strand, within IAI46_04640 at 994.904 kb on - strand, within IAI46_04640 at 994.904 kb on - strand, within IAI46_04640 at 994.904 kb on - strand, within IAI46_04640 at 994.904 kb on - strand, within IAI46_04640 at 994.904 kb on - strand, within IAI46_04640 at 994.944 kb on + strand, within IAI46_04640 at 994.944 kb on + strand, within IAI46_04640 at 994.945 kb on - strand, within IAI46_04640 at 994.945 kb on - strand, within IAI46_04640 at 994.999 kb on + strand, within IAI46_04640 at 994.999 kb on + strand, within IAI46_04640 at 995.000 kb on - strand, within IAI46_04640 at 995.001 kb on + strand, within IAI46_04640 at 995.002 kb on - strand, within IAI46_04640 at 995.030 kb on + strand, within IAI46_04640 at 995.037 kb on + strand, within IAI46_04640 at 995.038 kb on - strand, within IAI46_04640 at 995.185 kb on + strand, within IAI46_04640 at 995.214 kb on + strand, within IAI46_04640 at 995.214 kb on + strand, within IAI46_04640 at 995.215 kb on - strand, within IAI46_04640 at 995.281 kb on - strand, within IAI46_04640 at 995.290 kb on + strand, within IAI46_04640 at 995.301 kb on + strand, within IAI46_04640 at 995.301 kb on + strand, within IAI46_04640 at 995.301 kb on + strand, within IAI46_04640 at 995.302 kb on - strand, within IAI46_04640 at 995.302 kb on - strand, within IAI46_04640 at 995.302 kb on - strand, within IAI46_04640 at 995.302 kb on - strand, within IAI46_04640 at 995.302 kb on - strand, within IAI46_04640 at 995.302 kb on - strand, within IAI46_04640 at 995.523 kb on + strand, within IAI46_04640 at 995.523 kb on + strand, within IAI46_04640 at 995.527 kb on + strand, within IAI46_04640 at 995.528 kb on - strand, within IAI46_04640 at 995.691 kb on + strand, within IAI46_04640 at 995.691 kb on + strand, within IAI46_04640 at 995.692 kb on - strand, within IAI46_04640 at 995.692 kb on - strand, within IAI46_04640 at 995.707 kb on + strand, within IAI46_04640 at 995.708 kb on - strand, within IAI46_04640 at 995.708 kb on - strand, within IAI46_04640 at 995.719 kb on + strand, within IAI46_04640 at 995.799 kb on + strand at 995.809 kb on + strand at 995.810 kb on - strand at 995.846 kb on - strand at 995.846 kb on - strand at 995.869 kb on + strand at 995.872 kb on + strand at 996.143 kb on + strand, within IAI46_04645 at 996.143 kb on + strand, within IAI46_04645 at 996.143 kb on + strand, within IAI46_04645 at 996.143 kb on + strand, within IAI46_04645 at 996.143 kb on + strand, within IAI46_04645 at 996.143 kb on + strand, within IAI46_04645 at 996.144 kb on - strand, within IAI46_04645 at 996.144 kb on - strand, within IAI46_04645 at 996.144 kb on - strand, within IAI46_04645 at 996.516 kb on - strand, within IAI46_04645 at 996.602 kb on + strand, within IAI46_04645 at 996.610 kb on + strand, within IAI46_04645 at 996.610 kb on + strand, within IAI46_04645 at 996.610 kb on + strand, within IAI46_04645 at 996.611 kb on - strand, within IAI46_04645 at 996.611 kb on - strand, within IAI46_04645 at 996.611 kb on - strand, within IAI46_04645 at 996.611 kb on - strand, within IAI46_04645 at 996.617 kb on + strand, within IAI46_04645 at 996.618 kb on - strand, within IAI46_04645 at 996.707 kb on + strand, within IAI46_04645 at 996.707 kb on + strand, within IAI46_04645 at 996.708 kb on - strand, within IAI46_04645 at 996.709 kb on + strand, within IAI46_04645 at 996.791 kb on + strand, within IAI46_04645 at 996.791 kb on + strand, within IAI46_04645 at 996.792 kb on - strand, within IAI46_04645 at 996.792 kb on - strand, within IAI46_04645 at 996.792 kb on - strand, within IAI46_04645 at 996.792 kb on - strand, within IAI46_04645 at 996.792 kb on - strand, within IAI46_04645 at 996.797 kb on + strand, within IAI46_04645 at 996.797 kb on + strand, within IAI46_04645 at 996.798 kb on - strand, within IAI46_04645 at 996.798 kb on - strand, within IAI46_04645 at 996.799 kb on + strand, within IAI46_04645 at 996.812 kb on + strand, within IAI46_04645 at 996.813 kb on - strand, within IAI46_04645 at 996.991 kb on + strand, within IAI46_04645 at 996.997 kb on + strand, within IAI46_04645 at 996.998 kb on - strand, within IAI46_04645 at 996.998 kb on - strand, within IAI46_04645 at 996.998 kb on - strand, within IAI46_04645 at 996.998 kb on - strand, within IAI46_04645 at 997.002 kb on - strand, within IAI46_04645 at 997.013 kb on - strand, within IAI46_04645 at 997.045 kb on + strand, within IAI46_04645 at 997.046 kb on - strand, within IAI46_04645 at 997.048 kb on - strand, within IAI46_04645 at 997.049 kb on + strand, within IAI46_04645 at 997.049 kb on + strand, within IAI46_04645 at 997.049 kb on + strand, within IAI46_04645 at 997.049 kb on + strand, within IAI46_04645 at 997.049 kb on + strand, within IAI46_04645 at 997.049 kb on + strand, within IAI46_04645 at 997.049 kb on + strand, within IAI46_04645 at 997.049 kb on + strand, within IAI46_04645 at 997.050 kb on - strand, within IAI46_04645 at 997.050 kb on - strand, within IAI46_04645 at 997.050 kb on - strand, within IAI46_04645 at 997.050 kb on - strand, within IAI46_04645 at 997.050 kb on - strand, within IAI46_04645 at 997.050 kb on - strand, within IAI46_04645 at 997.050 kb on - strand, within IAI46_04645 at 997.130 kb on + strand, within IAI46_04645 at 997.130 kb on + strand, within IAI46_04645 at 997.131 kb on - strand, within IAI46_04645 at 997.169 kb on - strand, within IAI46_04645 at 997.196 kb on + strand, within IAI46_04645 at 997.197 kb on - strand, within IAI46_04645 at 997.197 kb on - strand, within IAI46_04645 at 997.292 kb on + strand, within IAI46_04645 at 997.292 kb on + strand, within IAI46_04645 at 997.293 kb on - strand, within IAI46_04645 at 997.307 kb on + strand, within IAI46_04645 at 997.308 kb on - strand, within IAI46_04645 at 997.308 kb on - strand, within IAI46_04645 at 997.317 kb on + strand, within IAI46_04645 at 997.317 kb on + strand, within IAI46_04645 at 997.317 kb on + strand, within IAI46_04645 at 997.319 kb on + strand, within IAI46_04645 at 997.320 kb on - strand, within IAI46_04645 at 997.320 kb on - strand, within IAI46_04645 at 997.328 kb on + strand, within IAI46_04645 at 997.329 kb on - strand, within IAI46_04645 at 997.397 kb on - strand, within IAI46_04645 at 997.537 kb on - strand, within IAI46_04645 at 997.588 kb on - strand, within IAI46_04645 at 997.588 kb on - strand, within IAI46_04645 at 997.604 kb on + strand, within IAI46_04645 at 997.611 kb on - strand, within IAI46_04645 at 997.611 kb on - strand, within IAI46_04645 at 997.724 kb on + strand, within IAI46_04645 at 997.724 kb on + strand, within IAI46_04645 at 997.741 kb on - strand, within IAI46_04645 at 997.763 kb on + strand, within IAI46_04645 at 997.764 kb on - strand, within IAI46_04645 at 997.810 kb on + strand at 997.810 kb on + strand at 997.811 kb on - strand at 997.815 kb on - strand at 997.815 kb on - strand at 997.841 kb on + strand at 997.841 kb on + strand at 997.842 kb on - strand at 997.904 kb on - strand at 997.910 kb on + strand at 997.911 kb on - strand at 997.911 kb on - strand at 997.911 kb on - strand at 997.913 kb on + strand at 997.913 kb on + strand at 997.913 kb on + strand at 997.914 kb on - strand at 998.009 kb on + strand at 998.009 kb on + strand at 998.009 kb on + strand at 998.009 kb on + strand at 998.009 kb on + strand at 998.027 kb on + strand at 998.028 kb on - strand at 998.028 kb on - strand at 998.028 kb on - strand at 998.055 kb on + strand at 998.055 kb on + strand at 998.056 kb on - strand at 998.072 kb on - strand at 998.134 kb on - strand at 998.233 kb on + strand, within IAI46_04650 at 998.324 kb on - strand, within IAI46_04650 at 998.324 kb on - strand, within IAI46_04650 at 998.469 kb on - strand, within IAI46_04650 at 998.469 kb on - strand, within IAI46_04650 at 998.469 kb on - strand, within IAI46_04650 at 998.590 kb on + strand at 998.600 kb on + strand at 998.600 kb on + strand at 998.601 kb on - strand at 998.605 kb on - strand at 998.642 kb on + strand at 998.700 kb on + strand at 998.700 kb on + strand at 998.701 kb on - strand at 998.701 kb on - strand at 998.701 kb on - strand at 998.701 kb on - strand at 998.702 kb on + strand at 998.702 kb on + strand at 998.703 kb on - strand at 998.703 kb on - strand at 998.799 kb on + strand, within IAI46_04655 at 998.799 kb on + strand, within IAI46_04655 at 998.938 kb on + strand, within IAI46_04655 at 998.938 kb on + strand, within IAI46_04655 at 998.939 kb on - strand, within IAI46_04655 at 998.988 kb on - strand, within IAI46_04655
Per-strain Table
Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic remove 994,903 + IAI46_04640 0.13 -1.4 994,903 + IAI46_04640 0.13 -0.8 994,903 + IAI46_04640 0.13 +0.9 994,903 + IAI46_04640 0.13 -0.3 994,904 - IAI46_04640 0.13 +0.0 994,904 - IAI46_04640 0.13 +0.1 994,904 - IAI46_04640 0.13 -1.2 994,904 - IAI46_04640 0.13 -0.7 994,904 - IAI46_04640 0.13 +0.1 994,904 - IAI46_04640 0.13 +0.0 994,944 + IAI46_04640 0.17 +0.7 994,944 + IAI46_04640 0.17 +1.0 994,945 - IAI46_04640 0.17 -0.1 994,945 - IAI46_04640 0.17 -1.5 994,999 + IAI46_04640 0.22 +0.7 994,999 + IAI46_04640 0.22 -1.4 995,000 - IAI46_04640 0.22 +0.2 995,001 + IAI46_04640 0.22 -0.3 995,002 - IAI46_04640 0.22 +0.0 995,030 + IAI46_04640 0.25 -1.1 995,037 + IAI46_04640 0.25 -0.0 995,038 - IAI46_04640 0.25 +0.2 995,185 + IAI46_04640 0.38 -0.2 995,214 + IAI46_04640 0.41 -1.2 995,214 + IAI46_04640 0.41 +0.3 995,215 - IAI46_04640 0.41 +0.5 995,281 - IAI46_04640 0.47 +0.2 995,290 + IAI46_04640 0.48 -0.3 995,301 + IAI46_04640 0.49 -0.2 995,301 + IAI46_04640 0.49 +0.5 995,301 + IAI46_04640 0.49 +0.1 995,302 - IAI46_04640 0.49 +2.0 995,302 - IAI46_04640 0.49 +1.3 995,302 - IAI46_04640 0.49 +0.6 995,302 - IAI46_04640 0.49 -0.1 995,302 - IAI46_04640 0.49 -0.5 995,302 - IAI46_04640 0.49 -0.2 995,523 + IAI46_04640 0.69 -0.3 995,523 + IAI46_04640 0.69 -0.6 995,527 + IAI46_04640 0.69 -0.2 995,528 - IAI46_04640 0.69 -0.4 995,691 + IAI46_04640 0.84 -1.2 995,691 + IAI46_04640 0.84 +0.2 995,692 - IAI46_04640 0.84 +0.1 995,692 - IAI46_04640 0.84 +0.2 995,707 + IAI46_04640 0.85 -0.6 995,708 - IAI46_04640 0.85 +0.4 995,708 - IAI46_04640 0.85 +0.9 995,719 + IAI46_04640 0.86 -1.5 995,799 + -0.6 995,809 + +0.3 995,810 - +0.2 995,846 - +0.9 995,846 - +0.6 995,869 + -0.5 995,872 + +0.7 996,143 + IAI46_04645 0.13 +1.1 996,143 + IAI46_04645 0.13 -0.5 996,143 + IAI46_04645 0.13 -0.7 996,143 + IAI46_04645 0.13 +0.9 996,143 + IAI46_04645 0.13 -0.5 996,143 + IAI46_04645 0.13 -1.3 996,144 - IAI46_04645 0.13 +0.7 996,144 - IAI46_04645 0.13 -0.1 996,144 - IAI46_04645 0.13 +0.3 996,516 - IAI46_04645 0.31 +0.6 996,602 + IAI46_04645 0.35 -0.7 996,610 + IAI46_04645 0.35 +0.3 996,610 + IAI46_04645 0.35 -0.4 996,610 + IAI46_04645 0.35 -0.2 996,611 - IAI46_04645 0.35 +0.2 996,611 - IAI46_04645 0.35 +0.3 996,611 - IAI46_04645 0.35 +1.0 996,611 - IAI46_04645 0.35 -0.7 996,617 + IAI46_04645 0.35 -0.5 996,618 - IAI46_04645 0.35 +0.5 996,707 + IAI46_04645 0.40 -0.2 996,707 + IAI46_04645 0.40 -0.3 996,708 - IAI46_04645 0.40 -0.5 996,709 + IAI46_04645 0.40 +1.0 996,791 + IAI46_04645 0.44 +0.3 996,791 + IAI46_04645 0.44 +0.3 996,792 - IAI46_04645 0.44 +0.4 996,792 - IAI46_04645 0.44 +0.2 996,792 - IAI46_04645 0.44 -0.7 996,792 - IAI46_04645 0.44 -1.7 996,792 - IAI46_04645 0.44 -0.4 996,797 + IAI46_04645 0.44 -0.3 996,797 + IAI46_04645 0.44 -1.1 996,798 - IAI46_04645 0.44 -0.7 996,798 - IAI46_04645 0.44 -1.3 996,799 + IAI46_04645 0.44 +0.3 996,812 + IAI46_04645 0.45 +0.6 996,813 - IAI46_04645 0.45 +0.3 996,991 + IAI46_04645 0.53 -0.0 996,997 + IAI46_04645 0.53 +0.3 996,998 - IAI46_04645 0.53 -0.1 996,998 - IAI46_04645 0.53 -0.4 996,998 - IAI46_04645 0.53 -0.3 996,998 - IAI46_04645 0.53 -0.4 997,002 - IAI46_04645 0.53 +0.6 997,013 - IAI46_04645 0.54 +0.0 997,045 + IAI46_04645 0.55 -0.5 997,046 - IAI46_04645 0.55 +0.2 997,048 - IAI46_04645 0.56 -1.5 997,049 + IAI46_04645 0.56 +0.0 997,049 + IAI46_04645 0.56 -0.4 997,049 + IAI46_04645 0.56 +0.2 997,049 + IAI46_04645 0.56 -0.2 997,049 + IAI46_04645 0.56 +0.4 997,049 + IAI46_04645 0.56 +0.2 997,049 + IAI46_04645 0.56 +0.1 997,049 + IAI46_04645 0.56 +0.2 997,050 - IAI46_04645 0.56 -0.2 997,050 - IAI46_04645 0.56 +1.4 997,050 - IAI46_04645 0.56 +0.2 997,050 - IAI46_04645 0.56 +0.5 997,050 - IAI46_04645 0.56 -0.6 997,050 - IAI46_04645 0.56 +0.4 997,050 - IAI46_04645 0.56 +1.2 997,130 + IAI46_04645 0.59 +0.8 997,130 + IAI46_04645 0.59 -0.3 997,131 - IAI46_04645 0.59 +1.1 997,169 - IAI46_04645 0.61 +0.0 997,196 + IAI46_04645 0.63 -0.4 997,197 - IAI46_04645 0.63 -0.7 997,197 - IAI46_04645 0.63 +0.7 997,292 + IAI46_04645 0.67 +0.2 997,292 + IAI46_04645 0.67 -0.6 997,293 - IAI46_04645 0.67 +0.4 997,307 + IAI46_04645 0.68 +1.2 997,308 - IAI46_04645 0.68 +0.1 997,308 - IAI46_04645 0.68 -0.2 997,317 + IAI46_04645 0.68 +0.7 997,317 + IAI46_04645 0.68 -0.3 997,317 + IAI46_04645 0.68 -0.0 997,319 + IAI46_04645 0.68 -0.1 997,320 - IAI46_04645 0.68 -0.6 997,320 - IAI46_04645 0.68 +0.2 997,328 + IAI46_04645 0.69 -0.1 997,329 - IAI46_04645 0.69 +0.4 997,397 - IAI46_04645 0.72 -0.2 997,537 - IAI46_04645 0.79 +0.6 997,588 - IAI46_04645 0.81 +0.1 997,588 - IAI46_04645 0.81 +0.5 997,604 + IAI46_04645 0.82 +0.4 997,611 - IAI46_04645 0.82 -0.2 997,611 - IAI46_04645 0.82 +0.3 997,724 + IAI46_04645 0.87 +1.0 997,724 + IAI46_04645 0.87 -0.3 997,741 - IAI46_04645 0.88 +2.2 997,763 + IAI46_04645 0.89 +0.2 997,764 - IAI46_04645 0.89 +0.5 997,810 + -0.1 997,810 + +0.4 997,811 - +0.1 997,815 - +1.0 997,815 - +0.5 997,841 + -1.9 997,841 + +0.1 997,842 - +1.0 997,904 - +0.2 997,910 + +0.2 997,911 - -1.1 997,911 - -0.8 997,911 - -0.4 997,913 + -0.2 997,913 + -0.4 997,913 + -0.5 997,914 - +0.0 998,009 + +0.6 998,009 + -1.4 998,009 + +0.1 998,009 + +1.1 998,009 + -1.4 998,027 + -0.0 998,028 - -0.2 998,028 - +0.9 998,028 - -0.1 998,055 + -0.1 998,055 + +0.2 998,056 - +1.1 998,072 - +0.8 998,134 - +0.3 998,233 + IAI46_04650 0.29 +0.0 998,324 - IAI46_04650 0.46 +0.1 998,324 - IAI46_04650 0.46 +1.0 998,469 - IAI46_04650 0.74 +0.1 998,469 - IAI46_04650 0.74 -0.5 998,469 - IAI46_04650 0.74 +0.7 998,590 + +0.4 998,600 + +0.5 998,600 + +1.7 998,601 - +1.0 998,605 - +0.2 998,642 + +0.5 998,700 + -0.5 998,700 + -1.9 998,701 - -1.9 998,701 - -1.0 998,701 - -0.0 998,701 - -0.6 998,702 + +0.5 998,702 + -0.1 998,703 - -0.7 998,703 - +0.5 998,799 + IAI46_04655 0.15 +0.5 998,799 + IAI46_04655 0.15 +1.3 998,938 + IAI46_04655 0.42 -0.3 998,938 + IAI46_04655 0.42 +0.2 998,939 - IAI46_04655 0.42 -0.7 998,988 - IAI46_04655 0.51 -1.8
Or see this region's nucleotide sequence