Strain Fitness in Serratia liquefaciens MT49 around IAI46_04415

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04410 and IAI46_04415 are separated by 324 nucleotidesIAI46_04415 and IAI46_04420 are separated by 144 nucleotides IAI46_04410: IAI46_04410 - beta-Ala-His dipeptidase, at 943,554 to 945,014 _04410 IAI46_04415: IAI46_04415 - xanthine phosphoribosyltransferase, at 945,339 to 945,797 _04415 IAI46_04420: IAI46_04420 - esterase FrsA, at 945,942 to 947,189 _04420 Position (kb) 945 946Strain fitness (log2 ratio) -2 -1 0 1at 944.485 kb on + strand, within IAI46_04410at 944.485 kb on + strand, within IAI46_04410at 944.485 kb on + strand, within IAI46_04410at 944.485 kb on + strand, within IAI46_04410at 944.485 kb on + strand, within IAI46_04410at 944.486 kb on - strand, within IAI46_04410at 944.719 kb on + strand, within IAI46_04410at 944.719 kb on + strand, within IAI46_04410at 944.719 kb on + strand, within IAI46_04410at 944.720 kb on - strand, within IAI46_04410at 944.936 kb on - strandat 944.951 kb on + strandat 944.952 kb on - strandat 944.952 kb on - strandat 945.017 kb on + strandat 945.017 kb on + strandat 945.110 kb on + strandat 945.170 kb on + strandat 945.171 kb on - strandat 945.220 kb on + strandat 945.238 kb on + strandat 945.267 kb on + strandat 945.298 kb on + strandat 945.298 kb on + strandat 945.299 kb on - strandat 945.306 kb on - strandat 945.306 kb on - strandat 945.338 kb on + strandat 945.338 kb on + strandat 945.339 kb on - strandat 945.415 kb on + strand, within IAI46_04415at 945.511 kb on + strand, within IAI46_04415at 945.511 kb on + strand, within IAI46_04415at 945.512 kb on - strand, within IAI46_04415at 945.525 kb on + strand, within IAI46_04415at 945.526 kb on - strand, within IAI46_04415at 945.526 kb on - strand, within IAI46_04415at 945.526 kb on - strand, within IAI46_04415at 945.624 kb on - strand, within IAI46_04415at 945.648 kb on + strand, within IAI46_04415at 945.649 kb on - strand, within IAI46_04415at 945.649 kb on - strand, within IAI46_04415at 945.649 kb on - strand, within IAI46_04415at 945.712 kb on - strand, within IAI46_04415at 945.818 kb on - strandat 945.849 kb on - strandat 945.872 kb on + strandat 945.876 kb on + strandat 945.876 kb on + strandat 945.877 kb on - strandat 945.877 kb on - strandat 945.877 kb on - strandat 945.881 kb on + strandat 945.882 kb on - strandat 945.882 kb on - strandat 945.882 kb on - strandat 945.896 kb on - strandat 945.911 kb on + strandat 945.911 kb on + strandat 945.912 kb on - strandat 945.912 kb on - strandat 945.923 kb on + strandat 945.924 kb on - strandat 945.986 kb on + strandat 945.986 kb on + strandat 945.987 kb on - strandat 945.987 kb on - strandat 946.094 kb on + strand, within IAI46_04420at 946.094 kb on + strand, within IAI46_04420at 946.437 kb on + strand, within IAI46_04420at 946.438 kb on - strand, within IAI46_04420at 946.439 kb on + strand, within IAI46_04420at 946.440 kb on - strand, within IAI46_04420at 946.653 kb on + strand, within IAI46_04420at 946.654 kb on - strand, within IAI46_04420at 946.654 kb on - strand, within IAI46_04420at 946.654 kb on - strand, within IAI46_04420at 946.654 kb on - strand, within IAI46_04420at 946.783 kb on + strand, within IAI46_04420at 946.794 kb on + strand, within IAI46_04420at 946.795 kb on - strand, within IAI46_04420

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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944,485 + IAI46_04410 0.64 -0.1
944,485 + IAI46_04410 0.64 -1.8
944,485 + IAI46_04410 0.64 -0.1
944,485 + IAI46_04410 0.64 +1.1
944,485 + IAI46_04410 0.64 -0.2
944,486 - IAI46_04410 0.64 +0.2
944,719 + IAI46_04410 0.80 +0.0
944,719 + IAI46_04410 0.80 +1.3
944,719 + IAI46_04410 0.80 -0.0
944,720 - IAI46_04410 0.80 -0.7
944,936 - -0.4
944,951 + -0.5
944,952 - -0.4
944,952 - -2.6
945,017 + +0.2
945,017 + -0.2
945,110 + +0.7
945,170 + -1.1
945,171 - -0.4
945,220 + -1.5
945,238 + -0.1
945,267 + +0.2
945,298 + -1.1
945,298 + -1.3
945,299 - -0.2
945,306 - +0.8
945,306 - +1.0
945,338 + +0.7
945,338 + +0.1
945,339 - +0.0
945,415 + IAI46_04415 0.17 +1.7
945,511 + IAI46_04415 0.37 +0.3
945,511 + IAI46_04415 0.37 -1.4
945,512 - IAI46_04415 0.38 -0.0
945,525 + IAI46_04415 0.41 -0.2
945,526 - IAI46_04415 0.41 -1.0
945,526 - IAI46_04415 0.41 +1.2
945,526 - IAI46_04415 0.41 -0.2
945,624 - IAI46_04415 0.62 -0.2
945,648 + IAI46_04415 0.67 +0.1
945,649 - IAI46_04415 0.68 -0.2
945,649 - IAI46_04415 0.68 +0.3
945,649 - IAI46_04415 0.68 +0.4
945,712 - IAI46_04415 0.81 +0.4
945,818 - +0.7
945,849 - -0.6
945,872 + -0.8
945,876 + -0.3
945,876 + +0.1
945,877 - +0.1
945,877 - +0.9
945,877 - -1.1
945,881 + -0.1
945,882 - +0.4
945,882 - +0.6
945,882 - +1.5
945,896 - -0.2
945,911 + -0.5
945,911 + +0.9
945,912 - +0.6
945,912 - +0.2
945,923 + -0.8
945,924 - +0.4
945,986 + -1.8
945,986 + +0.8
945,987 - -0.5
945,987 - -0.2
946,094 + IAI46_04420 0.12 +0.4
946,094 + IAI46_04420 0.12 -0.5
946,437 + IAI46_04420 0.40 +0.5
946,438 - IAI46_04420 0.40 -0.2
946,439 + IAI46_04420 0.40 -0.4
946,440 - IAI46_04420 0.40 -0.3
946,653 + IAI46_04420 0.57 +0.6
946,654 - IAI46_04420 0.57 -0.6
946,654 - IAI46_04420 0.57 -0.2
946,654 - IAI46_04420 0.57 +0.3
946,654 - IAI46_04420 0.57 -0.5
946,783 + IAI46_04420 0.67 -0.2
946,794 + IAI46_04420 0.68 +1.4
946,795 - IAI46_04420 0.68 +1.7

Or see this region's nucleotide sequence