Strain Fitness in Serratia liquefaciens MT49 around IAI46_04265

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04255 and IAI46_04260 overlap by 1 nucleotidesIAI46_04260 and IAI46_04265 overlap by 20 nucleotidesIAI46_04265 and IAI46_04270 are separated by 63 nucleotides IAI46_04255: IAI46_04255 - amino acid ABC transporter permease, at 915,010 to 915,675 _04255 IAI46_04260: IAI46_04260 - amino acid ABC transporter permease, at 915,675 to 916,331 _04260 IAI46_04265: IAI46_04265 - amino acid ABC transporter ATP-binding protein, at 916,312 to 917,055 _04265 IAI46_04270: IAI46_04270 - alanine--glyoxylate aminotransferase family protein, at 917,119 to 918,360 _04270 Position (kb) 916 917 918Strain fitness (log2 ratio) -2 -1 0 1at 915.334 kb on - strand, within IAI46_04255at 915.335 kb on + strand, within IAI46_04255at 915.397 kb on - strand, within IAI46_04255at 915.452 kb on - strand, within IAI46_04255at 915.580 kb on + strand, within IAI46_04255at 915.580 kb on + strand, within IAI46_04255at 915.580 kb on + strand, within IAI46_04255at 915.580 kb on + strand, within IAI46_04255at 915.585 kb on - strand, within IAI46_04255at 915.585 kb on - strand, within IAI46_04255at 915.602 kb on - strand, within IAI46_04255at 915.962 kb on + strand, within IAI46_04260at 915.963 kb on - strand, within IAI46_04260at 915.983 kb on + strand, within IAI46_04260at 915.984 kb on - strand, within IAI46_04260at 916.201 kb on + strand, within IAI46_04260at 916.215 kb on + strand, within IAI46_04260at 916.215 kb on + strand, within IAI46_04260at 916.216 kb on - strand, within IAI46_04260at 916.216 kb on - strand, within IAI46_04260at 916.226 kb on + strand, within IAI46_04260at 916.226 kb on + strand, within IAI46_04260at 916.284 kb on + strandat 916.293 kb on + strandat 916.294 kb on - strandat 916.329 kb on + strandat 916.330 kb on - strandat 916.580 kb on + strand, within IAI46_04265at 916.581 kb on - strand, within IAI46_04265at 916.712 kb on - strand, within IAI46_04265at 916.876 kb on - strand, within IAI46_04265at 917.056 kb on + strandat 917.056 kb on + strandat 917.057 kb on - strandat 917.096 kb on + strandat 917.096 kb on + strandat 917.097 kb on - strandat 917.099 kb on + strandat 917.100 kb on - strandat 917.100 kb on - strandat 917.100 kb on - strandat 917.107 kb on + strandat 917.108 kb on - strandat 917.115 kb on + strandat 917.128 kb on - strandat 917.148 kb on + strandat 917.220 kb on + strandat 917.220 kb on + strandat 917.239 kb on + strandat 917.240 kb on - strandat 917.240 kb on - strandat 917.260 kb on + strand, within IAI46_04270at 917.261 kb on - strand, within IAI46_04270at 917.262 kb on + strand, within IAI46_04270at 917.284 kb on + strand, within IAI46_04270at 917.607 kb on + strand, within IAI46_04270at 917.627 kb on + strand, within IAI46_04270at 917.627 kb on + strand, within IAI46_04270at 917.627 kb on + strand, within IAI46_04270at 917.759 kb on + strand, within IAI46_04270at 917.759 kb on + strand, within IAI46_04270at 917.759 kb on + strand, within IAI46_04270at 917.854 kb on + strand, within IAI46_04270at 917.863 kb on + strand, within IAI46_04270at 917.864 kb on - strand, within IAI46_04270at 917.864 kb on - strand, within IAI46_04270at 917.864 kb on - strand, within IAI46_04270at 917.864 kb on - strand, within IAI46_04270at 917.890 kb on + strand, within IAI46_04270at 917.891 kb on - strand, within IAI46_04270at 917.988 kb on + strand, within IAI46_04270

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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915,334 - IAI46_04255 0.49 +0.1
915,335 + IAI46_04255 0.49 -1.4
915,397 - IAI46_04255 0.58 -0.4
915,452 - IAI46_04255 0.66 +0.1
915,580 + IAI46_04255 0.86 +0.2
915,580 + IAI46_04255 0.86 -0.8
915,580 + IAI46_04255 0.86 +0.9
915,580 + IAI46_04255 0.86 -1.5
915,585 - IAI46_04255 0.86 -1.3
915,585 - IAI46_04255 0.86 +1.3
915,602 - IAI46_04255 0.89 +0.0
915,962 + IAI46_04260 0.44 +0.2
915,963 - IAI46_04260 0.44 +0.1
915,983 + IAI46_04260 0.47 -0.6
915,984 - IAI46_04260 0.47 -0.0
916,201 + IAI46_04260 0.80 -0.5
916,215 + IAI46_04260 0.82 +0.2
916,215 + IAI46_04260 0.82 -0.7
916,216 - IAI46_04260 0.82 -0.0
916,216 - IAI46_04260 0.82 +1.0
916,226 + IAI46_04260 0.84 +0.0
916,226 + IAI46_04260 0.84 -0.9
916,284 + +1.5
916,293 + -0.2
916,294 - -0.3
916,329 + -0.2
916,330 - +1.4
916,580 + IAI46_04265 0.36 +0.2
916,581 - IAI46_04265 0.36 +0.1
916,712 - IAI46_04265 0.54 +0.5
916,876 - IAI46_04265 0.76 -0.4
917,056 + +0.5
917,056 + +0.1
917,057 - +0.1
917,096 + +0.2
917,096 + -0.1
917,097 - +0.7
917,099 + -1.1
917,100 - +1.4
917,100 - +0.7
917,100 - -0.3
917,107 + +0.7
917,108 - -0.1
917,115 + +1.6
917,128 - -0.1
917,148 + +0.2
917,220 + -1.0
917,220 + -0.0
917,239 + +0.6
917,240 - +1.2
917,240 - +1.0
917,260 + IAI46_04270 0.11 +0.4
917,261 - IAI46_04270 0.11 -1.0
917,262 + IAI46_04270 0.12 +0.4
917,284 + IAI46_04270 0.13 -0.5
917,607 + IAI46_04270 0.39 -1.4
917,627 + IAI46_04270 0.41 +0.8
917,627 + IAI46_04270 0.41 -0.4
917,627 + IAI46_04270 0.41 +0.0
917,759 + IAI46_04270 0.52 -1.1
917,759 + IAI46_04270 0.52 +1.5
917,759 + IAI46_04270 0.52 +1.4
917,854 + IAI46_04270 0.59 -0.1
917,863 + IAI46_04270 0.60 -0.4
917,864 - IAI46_04270 0.60 +0.2
917,864 - IAI46_04270 0.60 -1.3
917,864 - IAI46_04270 0.60 -0.1
917,864 - IAI46_04270 0.60 -0.0
917,890 + IAI46_04270 0.62 -0.1
917,891 - IAI46_04270 0.62 -2.2
917,988 + IAI46_04270 0.70 +1.6

Or see this region's nucleotide sequence