Strain Fitness in Serratia liquefaciens MT49 around IAI46_04135

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04130 and IAI46_04135 are separated by 71 nucleotidesIAI46_04135 and IAI46_04140 are separated by 44 nucleotidesIAI46_04140 and IAI46_04145 overlap by 4 nucleotides IAI46_04130: IAI46_04130 - murein transglycosylase D, at 890,009 to 891,394 _04130 IAI46_04135: IAI46_04135 - hydroxyacylglutathione hydrolase, at 891,466 to 892,221 _04135 IAI46_04140: IAI46_04140 - class I SAM-dependent methyltransferase, at 892,266 to 892,985 _04140 IAI46_04145: IAI46_04145 - ribonuclease HI, at 892,982 to 893,449 _04145 Position (kb) 891 892 893Strain fitness (log2 ratio) -2 -1 0 1 2at 890.493 kb on + strand, within IAI46_04130at 890.503 kb on + strand, within IAI46_04130at 890.503 kb on + strand, within IAI46_04130at 890.506 kb on - strand, within IAI46_04130at 890.555 kb on + strand, within IAI46_04130at 890.556 kb on - strand, within IAI46_04130at 890.562 kb on - strand, within IAI46_04130at 890.600 kb on - strand, within IAI46_04130at 890.600 kb on - strand, within IAI46_04130at 890.603 kb on - strand, within IAI46_04130at 890.628 kb on + strand, within IAI46_04130at 890.629 kb on - strand, within IAI46_04130at 890.645 kb on - strand, within IAI46_04130at 890.728 kb on + strand, within IAI46_04130at 890.740 kb on + strand, within IAI46_04130at 890.741 kb on - strand, within IAI46_04130at 890.750 kb on - strand, within IAI46_04130at 890.782 kb on + strand, within IAI46_04130at 890.782 kb on + strand, within IAI46_04130at 890.783 kb on - strand, within IAI46_04130at 890.783 kb on - strand, within IAI46_04130at 890.783 kb on - strand, within IAI46_04130at 890.783 kb on - strand, within IAI46_04130at 890.784 kb on + strand, within IAI46_04130at 890.802 kb on - strand, within IAI46_04130at 890.815 kb on + strand, within IAI46_04130at 890.816 kb on - strand, within IAI46_04130at 890.842 kb on + strand, within IAI46_04130at 890.843 kb on - strand, within IAI46_04130at 890.946 kb on - strand, within IAI46_04130at 891.000 kb on - strand, within IAI46_04130at 891.005 kb on + strand, within IAI46_04130at 891.005 kb on + strand, within IAI46_04130at 891.011 kb on + strand, within IAI46_04130at 891.029 kb on - strand, within IAI46_04130at 891.029 kb on - strand, within IAI46_04130at 891.040 kb on + strand, within IAI46_04130at 891.061 kb on - strand, within IAI46_04130at 891.061 kb on - strand, within IAI46_04130at 891.061 kb on - strand, within IAI46_04130at 891.066 kb on + strand, within IAI46_04130at 891.067 kb on - strand, within IAI46_04130at 891.067 kb on - strand, within IAI46_04130at 891.067 kb on - strand, within IAI46_04130at 891.081 kb on - strand, within IAI46_04130at 891.081 kb on - strand, within IAI46_04130at 891.081 kb on - strand, within IAI46_04130at 891.081 kb on - strand, within IAI46_04130at 891.087 kb on - strand, within IAI46_04130at 891.100 kb on - strand, within IAI46_04130at 891.214 kb on + strand, within IAI46_04130at 891.215 kb on - strand, within IAI46_04130at 891.215 kb on - strand, within IAI46_04130at 891.215 kb on - strand, within IAI46_04130at 891.215 kb on - strand, within IAI46_04130at 891.220 kb on + strand, within IAI46_04130at 891.220 kb on + strand, within IAI46_04130at 891.220 kb on + strand, within IAI46_04130at 891.221 kb on - strand, within IAI46_04130at 891.221 kb on - strand, within IAI46_04130at 891.224 kb on + strand, within IAI46_04130at 891.224 kb on + strand, within IAI46_04130at 891.261 kb on + strandat 891.262 kb on - strandat 891.356 kb on + strandat 891.356 kb on + strandat 891.386 kb on - strandat 891.416 kb on + strandat 891.451 kb on - strandat 891.595 kb on + strand, within IAI46_04135at 891.690 kb on + strand, within IAI46_04135at 891.720 kb on + strand, within IAI46_04135at 891.721 kb on - strand, within IAI46_04135at 891.721 kb on - strand, within IAI46_04135at 891.722 kb on + strand, within IAI46_04135at 891.742 kb on + strand, within IAI46_04135at 891.742 kb on + strand, within IAI46_04135at 891.743 kb on - strand, within IAI46_04135at 891.743 kb on - strand, within IAI46_04135at 891.785 kb on + strand, within IAI46_04135at 891.785 kb on + strand, within IAI46_04135at 891.785 kb on + strand, within IAI46_04135at 891.786 kb on - strand, within IAI46_04135at 891.857 kb on + strand, within IAI46_04135at 891.868 kb on - strand, within IAI46_04135at 891.870 kb on - strand, within IAI46_04135at 891.870 kb on - strand, within IAI46_04135at 891.879 kb on + strand, within IAI46_04135at 891.892 kb on - strand, within IAI46_04135at 891.998 kb on + strand, within IAI46_04135at 891.998 kb on + strand, within IAI46_04135at 891.998 kb on + strand, within IAI46_04135at 891.998 kb on + strand, within IAI46_04135at 891.998 kb on + strand, within IAI46_04135at 891.999 kb on - strand, within IAI46_04135at 892.016 kb on + strand, within IAI46_04135at 892.167 kb on + strandat 892.168 kb on - strandat 892.171 kb on + strandat 892.172 kb on - strandat 892.172 kb on - strandat 892.184 kb on + strandat 892.185 kb on - strandat 892.213 kb on - strandat 892.213 kb on - strandat 892.213 kb on - strandat 892.258 kb on - strandat 892.258 kb on - strandat 892.260 kb on + strandat 892.280 kb on + strandat 892.280 kb on + strandat 892.281 kb on - strandat 892.281 kb on - strandat 892.281 kb on - strandat 892.281 kb on - strandat 892.285 kb on + strandat 892.335 kb on + strandat 892.335 kb on + strandat 892.336 kb on - strandat 892.336 kb on - strandat 892.336 kb on - strandat 892.338 kb on + strand, within IAI46_04140at 892.338 kb on + strand, within IAI46_04140at 892.338 kb on + strand, within IAI46_04140at 892.339 kb on - strand, within IAI46_04140at 892.339 kb on - strand, within IAI46_04140at 892.339 kb on - strand, within IAI46_04140at 892.509 kb on + strand, within IAI46_04140at 892.509 kb on + strand, within IAI46_04140at 892.509 kb on + strand, within IAI46_04140at 892.510 kb on - strand, within IAI46_04140at 892.537 kb on + strand, within IAI46_04140at 892.537 kb on + strand, within IAI46_04140at 892.537 kb on + strand, within IAI46_04140at 892.538 kb on - strand, within IAI46_04140at 892.538 kb on - strand, within IAI46_04140at 892.565 kb on - strand, within IAI46_04140at 892.569 kb on + strand, within IAI46_04140at 892.569 kb on + strand, within IAI46_04140at 892.569 kb on + strand, within IAI46_04140at 892.569 kb on + strand, within IAI46_04140at 892.570 kb on - strand, within IAI46_04140at 892.570 kb on - strand, within IAI46_04140at 892.570 kb on - strand, within IAI46_04140at 892.710 kb on + strand, within IAI46_04140at 892.711 kb on - strand, within IAI46_04140at 892.711 kb on - strand, within IAI46_04140at 892.728 kb on - strand, within IAI46_04140at 892.767 kb on + strand, within IAI46_04140at 892.767 kb on + strand, within IAI46_04140at 892.768 kb on - strand, within IAI46_04140at 892.768 kb on - strand, within IAI46_04140at 892.815 kb on - strand, within IAI46_04140at 892.844 kb on - strand, within IAI46_04140at 892.859 kb on + strand, within IAI46_04140at 892.859 kb on + strand, within IAI46_04140at 892.859 kb on + strand, within IAI46_04140at 892.860 kb on - strand, within IAI46_04140

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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890,493 + IAI46_04130 0.35 -0.2
890,503 + IAI46_04130 0.36 -0.2
890,503 + IAI46_04130 0.36 -0.7
890,506 - IAI46_04130 0.36 +0.4
890,555 + IAI46_04130 0.39 +0.5
890,556 - IAI46_04130 0.39 -0.2
890,562 - IAI46_04130 0.40 +0.0
890,600 - IAI46_04130 0.43 +0.2
890,600 - IAI46_04130 0.43 +0.1
890,603 - IAI46_04130 0.43 +1.3
890,628 + IAI46_04130 0.45 -0.1
890,629 - IAI46_04130 0.45 +0.1
890,645 - IAI46_04130 0.46 -0.9
890,728 + IAI46_04130 0.52 +0.7
890,740 + IAI46_04130 0.53 -0.6
890,741 - IAI46_04130 0.53 +0.7
890,750 - IAI46_04130 0.53 -0.3
890,782 + IAI46_04130 0.56 +0.4
890,782 + IAI46_04130 0.56 -0.5
890,783 - IAI46_04130 0.56 +0.4
890,783 - IAI46_04130 0.56 +0.2
890,783 - IAI46_04130 0.56 -0.1
890,783 - IAI46_04130 0.56 +0.5
890,784 + IAI46_04130 0.56 +0.7
890,802 - IAI46_04130 0.57 +1.1
890,815 + IAI46_04130 0.58 +0.9
890,816 - IAI46_04130 0.58 +0.6
890,842 + IAI46_04130 0.60 +0.3
890,843 - IAI46_04130 0.60 +1.1
890,946 - IAI46_04130 0.68 +0.9
891,000 - IAI46_04130 0.72 -0.3
891,005 + IAI46_04130 0.72 -0.7
891,005 + IAI46_04130 0.72 +0.1
891,011 + IAI46_04130 0.72 +0.8
891,029 - IAI46_04130 0.74 +0.3
891,029 - IAI46_04130 0.74 +1.1
891,040 + IAI46_04130 0.74 +0.2
891,061 - IAI46_04130 0.76 -0.3
891,061 - IAI46_04130 0.76 -0.1
891,061 - IAI46_04130 0.76 +1.4
891,066 + IAI46_04130 0.76 -0.2
891,067 - IAI46_04130 0.76 -0.3
891,067 - IAI46_04130 0.76 +1.0
891,067 - IAI46_04130 0.76 +1.2
891,081 - IAI46_04130 0.77 -0.5
891,081 - IAI46_04130 0.77 +0.1
891,081 - IAI46_04130 0.77 +0.5
891,081 - IAI46_04130 0.77 +0.2
891,087 - IAI46_04130 0.78 +0.5
891,100 - IAI46_04130 0.79 +0.6
891,214 + IAI46_04130 0.87 +1.6
891,215 - IAI46_04130 0.87 +0.6
891,215 - IAI46_04130 0.87 +0.5
891,215 - IAI46_04130 0.87 +0.4
891,215 - IAI46_04130 0.87 +0.9
891,220 + IAI46_04130 0.87 +1.5
891,220 + IAI46_04130 0.87 -0.0
891,220 + IAI46_04130 0.87 +0.8
891,221 - IAI46_04130 0.87 +0.4
891,221 - IAI46_04130 0.87 -0.1
891,224 + IAI46_04130 0.88 -0.2
891,224 + IAI46_04130 0.88 +1.8
891,261 + +0.7
891,262 - +0.2
891,356 + +0.3
891,356 + -0.3
891,386 - +0.1
891,416 + +0.2
891,451 - -0.5
891,595 + IAI46_04135 0.17 -0.1
891,690 + IAI46_04135 0.30 +0.1
891,720 + IAI46_04135 0.34 +0.5
891,721 - IAI46_04135 0.34 -2.0
891,721 - IAI46_04135 0.34 +1.1
891,722 + IAI46_04135 0.34 +0.3
891,742 + IAI46_04135 0.37 -0.5
891,742 + IAI46_04135 0.37 +0.5
891,743 - IAI46_04135 0.37 +1.1
891,743 - IAI46_04135 0.37 +0.3
891,785 + IAI46_04135 0.42 +0.5
891,785 + IAI46_04135 0.42 +0.7
891,785 + IAI46_04135 0.42 -1.2
891,786 - IAI46_04135 0.42 -0.4
891,857 + IAI46_04135 0.52 -0.4
891,868 - IAI46_04135 0.53 +0.4
891,870 - IAI46_04135 0.53 +0.3
891,870 - IAI46_04135 0.53 +0.2
891,879 + IAI46_04135 0.55 -1.3
891,892 - IAI46_04135 0.56 -0.1
891,998 + IAI46_04135 0.70 -0.6
891,998 + IAI46_04135 0.70 +0.8
891,998 + IAI46_04135 0.70 +0.3
891,998 + IAI46_04135 0.70 +0.6
891,998 + IAI46_04135 0.70 +0.4
891,999 - IAI46_04135 0.71 +0.6
892,016 + IAI46_04135 0.73 -0.0
892,167 + -0.7
892,168 - +0.3
892,171 + -0.4
892,172 - -0.3
892,172 - +0.2
892,184 + -0.4
892,185 - -0.3
892,213 - -0.1
892,213 - +0.5
892,213 - -0.6
892,258 - +0.0
892,258 - +0.2
892,260 + -0.1
892,280 + +0.7
892,280 + +1.1
892,281 - -0.6
892,281 - +0.4
892,281 - +1.0
892,281 - -0.1
892,285 + -0.8
892,335 + +0.2
892,335 + -0.5
892,336 - -0.6
892,336 - +0.5
892,336 - -0.1
892,338 + IAI46_04140 0.10 -0.1
892,338 + IAI46_04140 0.10 -0.1
892,338 + IAI46_04140 0.10 -0.0
892,339 - IAI46_04140 0.10 +0.6
892,339 - IAI46_04140 0.10 -0.4
892,339 - IAI46_04140 0.10 +0.8
892,509 + IAI46_04140 0.34 -0.8
892,509 + IAI46_04140 0.34 -0.6
892,509 + IAI46_04140 0.34 +1.5
892,510 - IAI46_04140 0.34 +0.6
892,537 + IAI46_04140 0.38 +0.1
892,537 + IAI46_04140 0.38 +0.9
892,537 + IAI46_04140 0.38 -0.9
892,538 - IAI46_04140 0.38 +0.4
892,538 - IAI46_04140 0.38 +0.7
892,565 - IAI46_04140 0.42 +0.6
892,569 + IAI46_04140 0.42 -0.7
892,569 + IAI46_04140 0.42 +0.7
892,569 + IAI46_04140 0.42 -0.1
892,569 + IAI46_04140 0.42 +1.3
892,570 - IAI46_04140 0.42 +0.4
892,570 - IAI46_04140 0.42 -0.4
892,570 - IAI46_04140 0.42 -0.4
892,710 + IAI46_04140 0.62 +0.7
892,711 - IAI46_04140 0.62 -0.1
892,711 - IAI46_04140 0.62 +0.0
892,728 - IAI46_04140 0.64 -0.0
892,767 + IAI46_04140 0.70 +0.6
892,767 + IAI46_04140 0.70 +0.2
892,768 - IAI46_04140 0.70 -0.0
892,768 - IAI46_04140 0.70 +0.2
892,815 - IAI46_04140 0.76 -0.2
892,844 - IAI46_04140 0.80 -0.3
892,859 + IAI46_04140 0.82 -0.0
892,859 + IAI46_04140 0.82 -0.9
892,859 + IAI46_04140 0.82 +0.7
892,860 - IAI46_04140 0.82 +0.6

Or see this region's nucleotide sequence