Strain Fitness in Serratia liquefaciens MT49 around IAI46_03580

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03570 and IAI46_03575 are separated by 1 nucleotidesIAI46_03575 and IAI46_03580 are separated by 129 nucleotidesIAI46_03580 and IAI46_03585 are separated by 190 nucleotides IAI46_03570: IAI46_03570 - vitamin B12 ABC transporter substrate-binding protein BtuF, at 771,564 to 772,370 _03570 IAI46_03575: IAI46_03575 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 772,372 to 773,073 _03575 IAI46_03580: IAI46_03580 - dGTPase, at 773,203 to 774,720 _03580 IAI46_03585: IAI46_03585 - serine endoprotease DegP, at 774,911 to 776,350 _03585 Position (kb) 773 774 775Strain fitness (log2 ratio) -2 -1 0 1 2at 772.207 kb on + strand, within IAI46_03570at 772.208 kb on - strand, within IAI46_03570at 772.258 kb on + strand, within IAI46_03570at 772.258 kb on + strand, within IAI46_03570at 772.259 kb on - strand, within IAI46_03570at 772.274 kb on + strand, within IAI46_03570at 772.330 kb on - strandat 772.330 kb on - strandat 773.112 kb on - strandat 773.112 kb on - strandat 773.112 kb on - strandat 773.116 kb on + strandat 773.116 kb on + strandat 773.116 kb on + strandat 773.117 kb on - strandat 773.138 kb on + strandat 773.139 kb on - strandat 773.150 kb on + strandat 773.151 kb on - strandat 773.151 kb on - strandat 773.151 kb on - strandat 773.169 kb on - strandat 773.220 kb on + strandat 773.220 kb on + strandat 773.278 kb on + strandat 773.279 kb on - strandat 773.285 kb on + strandat 773.285 kb on + strandat 773.285 kb on + strandat 773.285 kb on + strandat 773.286 kb on - strandat 773.286 kb on - strandat 773.286 kb on - strandat 773.286 kb on - strandat 773.286 kb on - strandat 773.286 kb on - strandat 773.316 kb on + strandat 773.317 kb on - strandat 773.430 kb on - strand, within IAI46_03580at 773.440 kb on - strand, within IAI46_03580at 773.457 kb on + strand, within IAI46_03580at 773.457 kb on + strand, within IAI46_03580at 773.563 kb on - strand, within IAI46_03580at 773.598 kb on + strand, within IAI46_03580at 773.598 kb on + strand, within IAI46_03580at 773.679 kb on - strand, within IAI46_03580at 773.782 kb on + strand, within IAI46_03580at 773.782 kb on + strand, within IAI46_03580at 773.783 kb on - strand, within IAI46_03580at 773.783 kb on - strand, within IAI46_03580at 773.783 kb on - strand, within IAI46_03580at 773.783 kb on - strand, within IAI46_03580at 773.799 kb on + strand, within IAI46_03580at 773.809 kb on + strand, within IAI46_03580at 773.810 kb on - strand, within IAI46_03580at 773.810 kb on - strand, within IAI46_03580at 773.836 kb on + strand, within IAI46_03580at 773.836 kb on + strand, within IAI46_03580at 773.836 kb on + strand, within IAI46_03580at 773.837 kb on - strand, within IAI46_03580at 773.837 kb on - strand, within IAI46_03580at 773.852 kb on - strand, within IAI46_03580at 773.884 kb on + strand, within IAI46_03580at 773.884 kb on + strand, within IAI46_03580at 773.885 kb on - strand, within IAI46_03580at 773.885 kb on - strand, within IAI46_03580at 773.908 kb on + strand, within IAI46_03580at 773.956 kb on - strand, within IAI46_03580at 773.986 kb on + strand, within IAI46_03580at 773.986 kb on + strand, within IAI46_03580at 773.987 kb on - strand, within IAI46_03580at 773.987 kb on - strand, within IAI46_03580at 773.987 kb on - strand, within IAI46_03580at 773.987 kb on - strand, within IAI46_03580at 773.987 kb on - strand, within IAI46_03580at 773.988 kb on + strand, within IAI46_03580at 773.988 kb on + strand, within IAI46_03580at 773.988 kb on + strand, within IAI46_03580at 773.988 kb on + strand, within IAI46_03580at 773.989 kb on - strand, within IAI46_03580at 773.989 kb on - strand, within IAI46_03580at 773.989 kb on - strand, within IAI46_03580at 773.989 kb on - strand, within IAI46_03580at 773.991 kb on + strand, within IAI46_03580at 773.991 kb on + strand, within IAI46_03580at 773.991 kb on + strand, within IAI46_03580at 773.992 kb on - strand, within IAI46_03580at 774.017 kb on - strand, within IAI46_03580at 774.076 kb on + strand, within IAI46_03580at 774.086 kb on + strand, within IAI46_03580at 774.087 kb on - strand, within IAI46_03580at 774.087 kb on - strand, within IAI46_03580at 774.107 kb on + strand, within IAI46_03580at 774.205 kb on + strand, within IAI46_03580at 774.205 kb on + strand, within IAI46_03580at 774.210 kb on - strand, within IAI46_03580at 774.258 kb on + strand, within IAI46_03580at 774.258 kb on + strand, within IAI46_03580at 774.264 kb on + strand, within IAI46_03580at 774.328 kb on + strand, within IAI46_03580at 774.328 kb on + strand, within IAI46_03580at 774.438 kb on + strand, within IAI46_03580at 774.439 kb on - strand, within IAI46_03580at 774.442 kb on + strand, within IAI46_03580at 774.442 kb on + strand, within IAI46_03580at 774.442 kb on + strand, within IAI46_03580at 774.443 kb on - strand, within IAI46_03580at 774.443 kb on - strand, within IAI46_03580at 774.443 kb on - strand, within IAI46_03580at 774.511 kb on + strand, within IAI46_03580at 774.519 kb on - strand, within IAI46_03580at 774.565 kb on + strand, within IAI46_03580at 774.565 kb on + strand, within IAI46_03580at 774.566 kb on - strand, within IAI46_03580at 774.566 kb on - strand, within IAI46_03580at 774.566 kb on - strand, within IAI46_03580at 774.566 kb on - strand, within IAI46_03580at 774.629 kb on - strandat 774.629 kb on - strandat 774.655 kb on + strandat 774.680 kb on - strandat 774.685 kb on + strandat 774.685 kb on + strandat 774.735 kb on - strandat 774.738 kb on + strandat 774.739 kb on - strandat 774.746 kb on + strandat 774.800 kb on + strandat 774.800 kb on + strandat 774.809 kb on - strandat 774.812 kb on - strandat 774.812 kb on - strandat 774.815 kb on - strandat 774.815 kb on - strandat 774.820 kb on + strandat 774.847 kb on - strandat 774.847 kb on - strandat 774.847 kb on - strandat 774.849 kb on + strandat 774.849 kb on + strandat 774.860 kb on + strandat 774.861 kb on - strandat 774.861 kb on - strandat 774.875 kb on + strandat 774.878 kb on + strandat 774.878 kb on + strandat 774.879 kb on - strandat 774.879 kb on - strandat 774.927 kb on + strandat 774.927 kb on + strandat 774.927 kb on + strandat 775.072 kb on + strand, within IAI46_03585at 775.072 kb on + strand, within IAI46_03585at 775.072 kb on + strand, within IAI46_03585at 775.072 kb on + strand, within IAI46_03585at 775.073 kb on - strand, within IAI46_03585at 775.073 kb on - strand, within IAI46_03585at 775.073 kb on - strand, within IAI46_03585at 775.293 kb on - strand, within IAI46_03585at 775.429 kb on + strand, within IAI46_03585at 775.430 kb on - strand, within IAI46_03585at 775.485 kb on - strand, within IAI46_03585at 775.485 kb on - strand, within IAI46_03585at 775.509 kb on - strand, within IAI46_03585at 775.571 kb on - strand, within IAI46_03585at 775.622 kb on - strand, within IAI46_03585at 775.669 kb on + strand, within IAI46_03585

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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772,207 + IAI46_03570 0.80 +0.1
772,208 - IAI46_03570 0.80 +0.2
772,258 + IAI46_03570 0.86 +1.4
772,258 + IAI46_03570 0.86 +1.1
772,259 - IAI46_03570 0.86 +0.3
772,274 + IAI46_03570 0.88 +0.8
772,330 - +0.2
772,330 - +0.6
773,112 - +0.2
773,112 - +1.2
773,112 - -0.2
773,116 + -0.2
773,116 + -0.6
773,116 + +0.3
773,117 - -0.5
773,138 + +2.2
773,139 - +0.5
773,150 + +0.0
773,151 - -1.6
773,151 - +0.3
773,151 - +0.2
773,169 - +0.4
773,220 + +0.0
773,220 + -0.1
773,278 + +0.2
773,279 - +0.2
773,285 + +0.6
773,285 + +0.8
773,285 + +0.1
773,285 + +0.7
773,286 - +0.7
773,286 - -0.5
773,286 - -1.2
773,286 - -0.4
773,286 - -0.1
773,286 - +0.4
773,316 + -1.3
773,317 - +2.2
773,430 - IAI46_03580 0.15 -0.1
773,440 - IAI46_03580 0.16 +1.4
773,457 + IAI46_03580 0.17 -0.0
773,457 + IAI46_03580 0.17 -0.7
773,563 - IAI46_03580 0.24 -0.2
773,598 + IAI46_03580 0.26 -1.0
773,598 + IAI46_03580 0.26 +0.2
773,679 - IAI46_03580 0.31 -0.4
773,782 + IAI46_03580 0.38 +1.8
773,782 + IAI46_03580 0.38 -0.5
773,783 - IAI46_03580 0.38 -0.0
773,783 - IAI46_03580 0.38 +0.3
773,783 - IAI46_03580 0.38 -0.1
773,783 - IAI46_03580 0.38 +0.5
773,799 + IAI46_03580 0.39 -0.1
773,809 + IAI46_03580 0.40 +0.4
773,810 - IAI46_03580 0.40 +0.1
773,810 - IAI46_03580 0.40 -0.3
773,836 + IAI46_03580 0.42 -0.4
773,836 + IAI46_03580 0.42 +0.5
773,836 + IAI46_03580 0.42 -0.5
773,837 - IAI46_03580 0.42 -0.4
773,837 - IAI46_03580 0.42 +0.5
773,852 - IAI46_03580 0.43 -0.1
773,884 + IAI46_03580 0.45 -0.3
773,884 + IAI46_03580 0.45 +1.2
773,885 - IAI46_03580 0.45 +0.6
773,885 - IAI46_03580 0.45 +0.2
773,908 + IAI46_03580 0.46 +1.2
773,956 - IAI46_03580 0.50 -0.4
773,986 + IAI46_03580 0.52 -0.7
773,986 + IAI46_03580 0.52 -0.0
773,987 - IAI46_03580 0.52 +0.4
773,987 - IAI46_03580 0.52 +1.0
773,987 - IAI46_03580 0.52 +2.7
773,987 - IAI46_03580 0.52 +0.7
773,987 - IAI46_03580 0.52 -1.1
773,988 + IAI46_03580 0.52 +0.7
773,988 + IAI46_03580 0.52 -0.2
773,988 + IAI46_03580 0.52 +0.1
773,988 + IAI46_03580 0.52 -0.4
773,989 - IAI46_03580 0.52 -0.1
773,989 - IAI46_03580 0.52 -0.6
773,989 - IAI46_03580 0.52 -0.4
773,989 - IAI46_03580 0.52 -0.6
773,991 + IAI46_03580 0.52 -0.7
773,991 + IAI46_03580 0.52 +0.1
773,991 + IAI46_03580 0.52 +0.7
773,992 - IAI46_03580 0.52 -1.3
774,017 - IAI46_03580 0.54 -0.1
774,076 + IAI46_03580 0.58 +2.6
774,086 + IAI46_03580 0.58 -0.2
774,087 - IAI46_03580 0.58 -0.2
774,087 - IAI46_03580 0.58 -0.2
774,107 + IAI46_03580 0.60 +0.2
774,205 + IAI46_03580 0.66 +1.8
774,205 + IAI46_03580 0.66 +0.4
774,210 - IAI46_03580 0.66 -1.4
774,258 + IAI46_03580 0.69 -0.5
774,258 + IAI46_03580 0.69 +0.8
774,264 + IAI46_03580 0.70 -0.1
774,328 + IAI46_03580 0.74 +0.4
774,328 + IAI46_03580 0.74 +1.1
774,438 + IAI46_03580 0.81 -2.6
774,439 - IAI46_03580 0.81 +0.3
774,442 + IAI46_03580 0.82 -0.2
774,442 + IAI46_03580 0.82 -0.4
774,442 + IAI46_03580 0.82 -0.2
774,443 - IAI46_03580 0.82 +0.3
774,443 - IAI46_03580 0.82 +0.3
774,443 - IAI46_03580 0.82 -0.2
774,511 + IAI46_03580 0.86 -0.2
774,519 - IAI46_03580 0.87 -0.9
774,565 + IAI46_03580 0.90 -0.7
774,565 + IAI46_03580 0.90 +0.1
774,566 - IAI46_03580 0.90 -0.2
774,566 - IAI46_03580 0.90 -0.8
774,566 - IAI46_03580 0.90 -0.2
774,566 - IAI46_03580 0.90 -0.9
774,629 - -0.1
774,629 - -0.9
774,655 + -0.2
774,680 - -0.2
774,685 + -0.1
774,685 + +1.1
774,735 - -0.7
774,738 + +0.3
774,739 - +0.9
774,746 + +0.7
774,800 + -0.2
774,800 + +0.7
774,809 - -0.3
774,812 - +0.1
774,812 - +0.1
774,815 - -0.7
774,815 - -0.3
774,820 + -0.8
774,847 - -0.2
774,847 - -0.5
774,847 - +0.2
774,849 + -0.2
774,849 + +0.3
774,860 + -0.3
774,861 - +0.8
774,861 - -0.1
774,875 + +0.1
774,878 + -0.5
774,878 + +0.1
774,879 - +0.2
774,879 - -0.5
774,927 + +0.4
774,927 + -0.1
774,927 + -0.5
775,072 + IAI46_03585 0.11 -0.6
775,072 + IAI46_03585 0.11 +0.5
775,072 + IAI46_03585 0.11 +1.0
775,072 + IAI46_03585 0.11 +0.0
775,073 - IAI46_03585 0.11 -0.2
775,073 - IAI46_03585 0.11 +1.4
775,073 - IAI46_03585 0.11 +0.9
775,293 - IAI46_03585 0.27 +0.8
775,429 + IAI46_03585 0.36 -0.8
775,430 - IAI46_03585 0.36 +0.1
775,485 - IAI46_03585 0.40 +0.3
775,485 - IAI46_03585 0.40 +0.9
775,509 - IAI46_03585 0.42 +0.4
775,571 - IAI46_03585 0.46 -1.8
775,622 - IAI46_03585 0.49 -0.2
775,669 + IAI46_03585 0.53 -0.0

Or see this region's nucleotide sequence