Strain Fitness in Serratia liquefaciens MT49 around IAI46_03355

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03350 and IAI46_03355 are separated by 2 nucleotidesIAI46_03355 and IAI46_03360 are separated by 89 nucleotidesIAI46_03360 and IAI46_03365 are separated by 681 nucleotides IAI46_03350: IAI46_03350 - 3-isopropylmalate dehydrogenase, at 723,956 to 725,047 _03350 IAI46_03355: IAI46_03355 - 2-isopropylmalate synthase, at 725,050 to 726,624 _03355 IAI46_03360: IAI46_03360 - leu operon leader peptide, at 726,714 to 726,797 _03360 IAI46_03365: IAI46_03365 - transcriptional regulator LeuO, at 727,479 to 728,426 _03365 Position (kb) 725 726 727Strain fitness (log2 ratio) -2 -1 0 1 2at 724.211 kb on + strand, within IAI46_03350at 724.212 kb on - strand, within IAI46_03350at 724.373 kb on - strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.374 kb on + strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.375 kb on - strand, within IAI46_03350at 724.378 kb on + strand, within IAI46_03350at 724.378 kb on + strand, within IAI46_03350at 724.378 kb on + strand, within IAI46_03350at 724.378 kb on + strand, within IAI46_03350at 724.378 kb on + strand, within IAI46_03350at 724.379 kb on - strand, within IAI46_03350at 724.379 kb on - strand, within IAI46_03350at 724.379 kb on - strand, within IAI46_03350at 724.379 kb on - strand, within IAI46_03350at 724.454 kb on + strand, within IAI46_03350at 724.466 kb on - strand, within IAI46_03350at 724.483 kb on + strand, within IAI46_03350at 724.483 kb on + strand, within IAI46_03350at 724.484 kb on - strand, within IAI46_03350at 724.549 kb on - strand, within IAI46_03350at 724.549 kb on - strand, within IAI46_03350at 724.549 kb on - strand, within IAI46_03350at 724.614 kb on + strand, within IAI46_03350at 724.618 kb on + strand, within IAI46_03350at 724.618 kb on + strand, within IAI46_03350at 724.618 kb on + strand, within IAI46_03350at 724.619 kb on - strand, within IAI46_03350at 724.648 kb on + strand, within IAI46_03350at 724.707 kb on + strand, within IAI46_03350at 724.820 kb on + strand, within IAI46_03350at 724.975 kb on + strandat 724.991 kb on + strandat 724.991 kb on + strandat 725.034 kb on + strandat 725.034 kb on + strandat 725.035 kb on - strandat 725.110 kb on + strandat 725.130 kb on + strandat 725.131 kb on - strandat 725.131 kb on - strandat 725.131 kb on - strandat 725.133 kb on + strandat 725.140 kb on + strandat 725.141 kb on - strandat 725.192 kb on - strandat 725.192 kb on - strandat 725.216 kb on + strand, within IAI46_03355at 725.217 kb on - strand, within IAI46_03355at 725.229 kb on + strand, within IAI46_03355at 725.280 kb on - strand, within IAI46_03355at 725.310 kb on + strand, within IAI46_03355at 725.310 kb on + strand, within IAI46_03355at 725.310 kb on + strand, within IAI46_03355at 725.310 kb on + strand, within IAI46_03355at 725.311 kb on - strand, within IAI46_03355at 725.412 kb on + strand, within IAI46_03355at 725.441 kb on + strand, within IAI46_03355at 725.478 kb on + strand, within IAI46_03355at 725.479 kb on - strand, within IAI46_03355at 725.481 kb on + strand, within IAI46_03355at 725.482 kb on - strand, within IAI46_03355at 725.555 kb on + strand, within IAI46_03355at 725.573 kb on + strand, within IAI46_03355at 725.573 kb on + strand, within IAI46_03355at 725.574 kb on - strand, within IAI46_03355at 725.574 kb on - strand, within IAI46_03355at 725.587 kb on - strand, within IAI46_03355at 725.588 kb on + strand, within IAI46_03355at 725.588 kb on + strand, within IAI46_03355at 725.589 kb on - strand, within IAI46_03355at 725.589 kb on - strand, within IAI46_03355at 725.589 kb on - strand, within IAI46_03355at 725.589 kb on - strand, within IAI46_03355at 725.589 kb on - strand, within IAI46_03355at 725.653 kb on + strand, within IAI46_03355at 725.653 kb on + strand, within IAI46_03355at 725.654 kb on - strand, within IAI46_03355at 725.654 kb on - strand, within IAI46_03355at 725.654 kb on - strand, within IAI46_03355at 725.654 kb on - strand, within IAI46_03355at 725.669 kb on - strand, within IAI46_03355at 725.669 kb on - strand, within IAI46_03355at 725.854 kb on + strand, within IAI46_03355at 725.854 kb on + strand, within IAI46_03355at 725.854 kb on + strand, within IAI46_03355at 726.030 kb on + strand, within IAI46_03355at 726.030 kb on + strand, within IAI46_03355at 726.030 kb on + strand, within IAI46_03355at 726.031 kb on - strand, within IAI46_03355at 726.062 kb on + strand, within IAI46_03355at 726.062 kb on + strand, within IAI46_03355at 726.063 kb on - strand, within IAI46_03355at 726.075 kb on + strand, within IAI46_03355at 726.076 kb on - strand, within IAI46_03355at 726.076 kb on - strand, within IAI46_03355at 726.076 kb on - strand, within IAI46_03355at 726.078 kb on + strand, within IAI46_03355at 726.218 kb on - strand, within IAI46_03355at 726.230 kb on + strand, within IAI46_03355at 726.231 kb on - strand, within IAI46_03355at 726.231 kb on - strand, within IAI46_03355at 726.231 kb on - strand, within IAI46_03355at 726.235 kb on - strand, within IAI46_03355at 726.256 kb on + strand, within IAI46_03355at 726.256 kb on + strand, within IAI46_03355at 726.256 kb on + strand, within IAI46_03355at 726.257 kb on - strand, within IAI46_03355at 726.257 kb on - strand, within IAI46_03355at 726.306 kb on + strand, within IAI46_03355at 726.306 kb on + strand, within IAI46_03355at 726.306 kb on + strand, within IAI46_03355at 726.390 kb on + strand, within IAI46_03355at 726.394 kb on + strand, within IAI46_03355at 726.395 kb on - strand, within IAI46_03355at 726.490 kb on + strandat 726.491 kb on - strandat 726.491 kb on - strandat 726.491 kb on - strandat 726.646 kb on + strandat 726.657 kb on - strandat 726.697 kb on + strandat 726.761 kb on + strand, within IAI46_03360at 726.766 kb on - strand, within IAI46_03360at 726.766 kb on - strand, within IAI46_03360at 726.774 kb on + strand, within IAI46_03360at 726.775 kb on - strand, within IAI46_03360at 726.784 kb on + strand, within IAI46_03360at 726.784 kb on + strand, within IAI46_03360at 726.784 kb on + strand, within IAI46_03360at 726.784 kb on + strand, within IAI46_03360at 726.785 kb on - strand, within IAI46_03360at 726.785 kb on - strand, within IAI46_03360at 726.785 kb on - strand, within IAI46_03360at 726.785 kb on - strand, within IAI46_03360at 726.785 kb on - strand, within IAI46_03360at 726.785 kb on - strand, within IAI46_03360at 726.785 kb on - strand, within IAI46_03360at 726.832 kb on - strandat 726.852 kb on + strandat 726.853 kb on - strandat 726.856 kb on + strandat 726.885 kb on - strandat 726.927 kb on + strandat 726.928 kb on - strandat 726.985 kb on + strandat 727.003 kb on + strandat 727.003 kb on + strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.006 kb on - strandat 727.006 kb on - strandat 727.006 kb on - strandat 727.006 kb on - strandat 727.006 kb on - strandat 727.006 kb on - strandat 727.007 kb on + strandat 727.008 kb on - strandat 727.102 kb on - strandat 727.132 kb on - strandat 727.148 kb on - strandat 727.154 kb on - strandat 727.160 kb on - strandat 727.171 kb on + strandat 727.248 kb on + strandat 727.297 kb on + strandat 727.337 kb on + strandat 727.339 kb on + strandat 727.436 kb on + strandat 727.466 kb on - strandat 727.478 kb on + strandat 727.502 kb on + strandat 727.534 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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724,211 + IAI46_03350 0.23 +1.3
724,212 - IAI46_03350 0.23 +0.1
724,373 - IAI46_03350 0.38 -0.3
724,374 + IAI46_03350 0.38 +0.1
724,374 + IAI46_03350 0.38 +0.2
724,374 + IAI46_03350 0.38 +0.2
724,374 + IAI46_03350 0.38 +0.8
724,374 + IAI46_03350 0.38 +0.2
724,374 + IAI46_03350 0.38 +0.8
724,374 + IAI46_03350 0.38 -0.8
724,374 + IAI46_03350 0.38 -0.7
724,374 + IAI46_03350 0.38 -0.1
724,374 + IAI46_03350 0.38 +0.7
724,374 + IAI46_03350 0.38 +0.7
724,374 + IAI46_03350 0.38 -0.2
724,374 + IAI46_03350 0.38 +1.2
724,375 - IAI46_03350 0.38 -0.5
724,375 - IAI46_03350 0.38 +0.7
724,375 - IAI46_03350 0.38 +0.5
724,375 - IAI46_03350 0.38 +0.1
724,375 - IAI46_03350 0.38 +0.3
724,375 - IAI46_03350 0.38 -0.4
724,375 - IAI46_03350 0.38 -0.3
724,375 - IAI46_03350 0.38 +0.5
724,375 - IAI46_03350 0.38 +1.0
724,375 - IAI46_03350 0.38 +0.1
724,375 - IAI46_03350 0.38 +0.9
724,375 - IAI46_03350 0.38 +0.0
724,378 + IAI46_03350 0.39 +1.6
724,378 + IAI46_03350 0.39 -0.8
724,378 + IAI46_03350 0.39 +2.0
724,378 + IAI46_03350 0.39 -0.5
724,378 + IAI46_03350 0.39 +0.3
724,379 - IAI46_03350 0.39 -0.3
724,379 - IAI46_03350 0.39 +0.3
724,379 - IAI46_03350 0.39 +0.3
724,379 - IAI46_03350 0.39 -0.7
724,454 + IAI46_03350 0.46 -0.5
724,466 - IAI46_03350 0.47 +0.6
724,483 + IAI46_03350 0.48 -0.6
724,483 + IAI46_03350 0.48 +0.5
724,484 - IAI46_03350 0.48 -0.3
724,549 - IAI46_03350 0.54 +0.3
724,549 - IAI46_03350 0.54 +0.2
724,549 - IAI46_03350 0.54 +0.7
724,614 + IAI46_03350 0.60 -0.3
724,618 + IAI46_03350 0.61 +0.1
724,618 + IAI46_03350 0.61 -0.4
724,618 + IAI46_03350 0.61 +0.1
724,619 - IAI46_03350 0.61 +1.0
724,648 + IAI46_03350 0.63 -0.4
724,707 + IAI46_03350 0.69 -0.5
724,820 + IAI46_03350 0.79 -0.1
724,975 + +0.0
724,991 + -0.7
724,991 + +0.9
725,034 + -0.0
725,034 + +0.2
725,035 - -0.5
725,110 + +0.7
725,130 + -0.1
725,131 - +0.1
725,131 - +0.3
725,131 - +0.3
725,133 + -0.3
725,140 + -0.3
725,141 - +0.5
725,192 - +0.1
725,192 - -0.1
725,216 + IAI46_03355 0.11 -0.3
725,217 - IAI46_03355 0.11 -0.7
725,229 + IAI46_03355 0.11 +0.3
725,280 - IAI46_03355 0.15 +0.5
725,310 + IAI46_03355 0.17 -0.2
725,310 + IAI46_03355 0.17 -0.1
725,310 + IAI46_03355 0.17 +0.0
725,310 + IAI46_03355 0.17 -0.3
725,311 - IAI46_03355 0.17 +0.8
725,412 + IAI46_03355 0.23 -1.7
725,441 + IAI46_03355 0.25 +0.9
725,478 + IAI46_03355 0.27 +0.4
725,479 - IAI46_03355 0.27 +0.4
725,481 + IAI46_03355 0.27 +0.3
725,482 - IAI46_03355 0.27 -0.2
725,555 + IAI46_03355 0.32 -0.1
725,573 + IAI46_03355 0.33 +1.0
725,573 + IAI46_03355 0.33 +0.6
725,574 - IAI46_03355 0.33 +0.8
725,574 - IAI46_03355 0.33 -0.4
725,587 - IAI46_03355 0.34 +0.7
725,588 + IAI46_03355 0.34 -0.0
725,588 + IAI46_03355 0.34 +0.2
725,589 - IAI46_03355 0.34 -0.4
725,589 - IAI46_03355 0.34 +0.6
725,589 - IAI46_03355 0.34 +0.6
725,589 - IAI46_03355 0.34 -0.7
725,589 - IAI46_03355 0.34 +0.2
725,653 + IAI46_03355 0.38 +0.2
725,653 + IAI46_03355 0.38 +0.8
725,654 - IAI46_03355 0.38 +0.3
725,654 - IAI46_03355 0.38 +0.3
725,654 - IAI46_03355 0.38 +0.3
725,654 - IAI46_03355 0.38 +0.6
725,669 - IAI46_03355 0.39 +1.1
725,669 - IAI46_03355 0.39 -0.3
725,854 + IAI46_03355 0.51 +1.0
725,854 + IAI46_03355 0.51 -0.1
725,854 + IAI46_03355 0.51 -0.7
726,030 + IAI46_03355 0.62 +0.8
726,030 + IAI46_03355 0.62 -0.4
726,030 + IAI46_03355 0.62 +0.2
726,031 - IAI46_03355 0.62 -0.0
726,062 + IAI46_03355 0.64 +0.3
726,062 + IAI46_03355 0.64 +0.2
726,063 - IAI46_03355 0.64 +0.2
726,075 + IAI46_03355 0.65 +0.0
726,076 - IAI46_03355 0.65 -1.4
726,076 - IAI46_03355 0.65 -0.5
726,076 - IAI46_03355 0.65 -0.1
726,078 + IAI46_03355 0.65 +0.5
726,218 - IAI46_03355 0.74 -0.0
726,230 + IAI46_03355 0.75 -0.4
726,231 - IAI46_03355 0.75 +0.3
726,231 - IAI46_03355 0.75 -0.6
726,231 - IAI46_03355 0.75 -0.2
726,235 - IAI46_03355 0.75 -0.2
726,256 + IAI46_03355 0.77 +0.3
726,256 + IAI46_03355 0.77 +0.1
726,256 + IAI46_03355 0.77 +0.5
726,257 - IAI46_03355 0.77 -0.0
726,257 - IAI46_03355 0.77 +0.4
726,306 + IAI46_03355 0.80 +0.6
726,306 + IAI46_03355 0.80 -0.1
726,306 + IAI46_03355 0.80 -0.3
726,390 + IAI46_03355 0.85 -1.3
726,394 + IAI46_03355 0.85 -0.2
726,395 - IAI46_03355 0.85 -0.7
726,490 + +1.2
726,491 - +0.3
726,491 - +0.0
726,491 - -0.7
726,646 + +0.0
726,657 - +0.2
726,697 + +0.3
726,761 + IAI46_03360 0.56 +0.0
726,766 - IAI46_03360 0.62 -1.2
726,766 - IAI46_03360 0.62 +0.1
726,774 + IAI46_03360 0.71 -2.1
726,775 - IAI46_03360 0.73 +0.5
726,784 + IAI46_03360 0.83 +1.3
726,784 + IAI46_03360 0.83 +0.7
726,784 + IAI46_03360 0.83 +1.3
726,784 + IAI46_03360 0.83 -0.2
726,785 - IAI46_03360 0.85 +0.8
726,785 - IAI46_03360 0.85 +0.3
726,785 - IAI46_03360 0.85 -1.1
726,785 - IAI46_03360 0.85 -0.5
726,785 - IAI46_03360 0.85 +0.1
726,785 - IAI46_03360 0.85 +0.2
726,785 - IAI46_03360 0.85 -0.3
726,832 - -0.4
726,852 + -1.7
726,853 - -1.5
726,856 + -0.1
726,885 - +0.3
726,927 + +0.5
726,928 - +0.8
726,985 + -0.5
727,003 + -1.0
727,003 + +1.0
727,004 - +1.0
727,004 - +0.9
727,006 - -0.1
727,006 - -0.2
727,006 - +0.4
727,006 - +0.2
727,006 - -0.0
727,006 - +1.7
727,007 + -0.5
727,008 - -0.5
727,102 - +0.5
727,132 - +0.1
727,148 - +0.2
727,154 - +0.7
727,160 - +1.3
727,171 + +0.4
727,248 + -0.6
727,297 + -0.3
727,337 + +0.5
727,339 + +1.1
727,436 + -0.0
727,466 - -0.8
727,478 + -0.3
727,502 + -0.0
727,534 + -0.2

Or see this region's nucleotide sequence