Strain Fitness in Serratia liquefaciens MT49 around IAI46_02905

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02895 and IAI46_02900 overlap by 4 nucleotidesIAI46_02900 and IAI46_02905 are separated by 207 nucleotidesIAI46_02905 and IAI46_02910 are separated by 366 nucleotides IAI46_02895: IAI46_02895 - patatin family protein, at 617,272 to 618,393 _02895 IAI46_02900: IAI46_02900 - TatD family hydrolase, at 618,390 to 619,166 _02900 IAI46_02905: IAI46_02905 - NupC/NupG family nucleoside CNT transporter, at 619,374 to 620,639 _02905 IAI46_02910: IAI46_02910 - deoxyribose-phosphate aldolase, at 621,006 to 621,785 _02910 Position (kb) 619 620 621Strain fitness (log2 ratio) -1 0 1 2at 618.487 kb on + strand, within IAI46_02900at 618.488 kb on - strand, within IAI46_02900at 618.488 kb on - strand, within IAI46_02900at 618.494 kb on + strand, within IAI46_02900at 618.494 kb on + strand, within IAI46_02900at 618.495 kb on - strand, within IAI46_02900at 618.498 kb on - strand, within IAI46_02900at 618.498 kb on - strand, within IAI46_02900at 618.539 kb on - strand, within IAI46_02900at 618.594 kb on + strand, within IAI46_02900at 618.594 kb on + strand, within IAI46_02900at 618.594 kb on + strand, within IAI46_02900at 618.595 kb on - strand, within IAI46_02900at 618.595 kb on - strand, within IAI46_02900at 618.595 kb on - strand, within IAI46_02900at 618.595 kb on - strand, within IAI46_02900at 618.595 kb on - strand, within IAI46_02900at 618.595 kb on - strand, within IAI46_02900at 618.595 kb on - strand, within IAI46_02900at 618.595 kb on - strand, within IAI46_02900at 618.596 kb on + strand, within IAI46_02900at 618.596 kb on + strand, within IAI46_02900at 618.596 kb on + strand, within IAI46_02900at 618.596 kb on + strand, within IAI46_02900at 618.597 kb on - strand, within IAI46_02900at 618.597 kb on - strand, within IAI46_02900at 618.696 kb on + strand, within IAI46_02900at 618.696 kb on + strand, within IAI46_02900at 618.696 kb on + strand, within IAI46_02900at 618.696 kb on + strand, within IAI46_02900at 618.696 kb on + strand, within IAI46_02900at 618.696 kb on + strand, within IAI46_02900at 618.697 kb on - strand, within IAI46_02900at 618.697 kb on - strand, within IAI46_02900at 618.697 kb on - strand, within IAI46_02900at 618.697 kb on - strand, within IAI46_02900at 618.697 kb on - strand, within IAI46_02900at 618.697 kb on - strand, within IAI46_02900at 618.697 kb on - strand, within IAI46_02900at 618.697 kb on - strand, within IAI46_02900at 618.698 kb on + strand, within IAI46_02900at 618.698 kb on + strand, within IAI46_02900at 618.831 kb on - strand, within IAI46_02900at 618.856 kb on + strand, within IAI46_02900at 618.856 kb on + strand, within IAI46_02900at 618.857 kb on - strand, within IAI46_02900at 618.857 kb on - strand, within IAI46_02900at 618.910 kb on - strand, within IAI46_02900at 618.910 kb on - strand, within IAI46_02900at 618.912 kb on + strand, within IAI46_02900at 618.912 kb on + strand, within IAI46_02900at 618.913 kb on - strand, within IAI46_02900at 618.913 kb on - strand, within IAI46_02900at 618.940 kb on - strand, within IAI46_02900at 618.940 kb on - strand, within IAI46_02900at 619.164 kb on + strandat 619.246 kb on - strandat 619.262 kb on + strandat 619.262 kb on + strandat 619.276 kb on + strandat 619.277 kb on - strandat 619.294 kb on - strandat 619.299 kb on - strandat 619.299 kb on - strandat 619.354 kb on + strandat 619.355 kb on - strandat 619.355 kb on - strandat 619.503 kb on + strand, within IAI46_02905at 619.503 kb on + strand, within IAI46_02905at 619.504 kb on - strand, within IAI46_02905at 619.663 kb on + strand, within IAI46_02905at 619.707 kb on + strand, within IAI46_02905at 619.707 kb on + strand, within IAI46_02905at 619.707 kb on + strand, within IAI46_02905at 619.708 kb on - strand, within IAI46_02905at 619.708 kb on - strand, within IAI46_02905at 619.708 kb on - strand, within IAI46_02905at 619.708 kb on - strand, within IAI46_02905at 619.710 kb on + strand, within IAI46_02905at 619.710 kb on + strand, within IAI46_02905at 619.711 kb on - strand, within IAI46_02905at 619.772 kb on + strand, within IAI46_02905at 619.850 kb on + strand, within IAI46_02905at 619.851 kb on + strand, within IAI46_02905at 619.852 kb on - strand, within IAI46_02905at 619.852 kb on - strand, within IAI46_02905at 619.852 kb on - strand, within IAI46_02905at 619.884 kb on - strand, within IAI46_02905at 619.936 kb on - strand, within IAI46_02905at 619.963 kb on - strand, within IAI46_02905at 619.982 kb on + strand, within IAI46_02905at 619.982 kb on + strand, within IAI46_02905at 620.175 kb on - strand, within IAI46_02905at 620.257 kb on + strand, within IAI46_02905at 620.258 kb on - strand, within IAI46_02905at 620.355 kb on - strand, within IAI46_02905at 620.370 kb on + strand, within IAI46_02905at 620.370 kb on + strand, within IAI46_02905at 620.370 kb on + strand, within IAI46_02905at 620.371 kb on - strand, within IAI46_02905at 620.371 kb on - strand, within IAI46_02905at 620.691 kb on + strandat 620.693 kb on + strandat 620.694 kb on - strandat 620.694 kb on - strandat 620.698 kb on + strandat 620.698 kb on + strandat 620.699 kb on - strandat 620.699 kb on - strandat 620.817 kb on + strandat 620.818 kb on - strandat 620.866 kb on + strandat 620.866 kb on + strandat 620.866 kb on + strandat 620.866 kb on + strandat 620.869 kb on + strandat 620.870 kb on - strandat 620.870 kb on - strandat 620.870 kb on - strandat 620.870 kb on - strandat 620.895 kb on + strandat 620.895 kb on + strandat 620.896 kb on - strandat 620.949 kb on + strandat 621.047 kb on - strandat 621.132 kb on - strand, within IAI46_02910at 621.147 kb on - strand, within IAI46_02910at 621.147 kb on - strand, within IAI46_02910at 621.361 kb on - strand, within IAI46_02910at 621.461 kb on + strand, within IAI46_02910at 621.512 kb on + strand, within IAI46_02910at 621.512 kb on + strand, within IAI46_02910

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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618,487 + IAI46_02900 0.12 +0.1
618,488 - IAI46_02900 0.13 +0.8
618,488 - IAI46_02900 0.13 +0.3
618,494 + IAI46_02900 0.13 -1.0
618,494 + IAI46_02900 0.13 -0.0
618,495 - IAI46_02900 0.14 -0.9
618,498 - IAI46_02900 0.14 +0.4
618,498 - IAI46_02900 0.14 +0.2
618,539 - IAI46_02900 0.19 +0.6
618,594 + IAI46_02900 0.26 -0.3
618,594 + IAI46_02900 0.26 +1.1
618,594 + IAI46_02900 0.26 -0.2
618,595 - IAI46_02900 0.26 -0.5
618,595 - IAI46_02900 0.26 -0.6
618,595 - IAI46_02900 0.26 -1.1
618,595 - IAI46_02900 0.26 +0.6
618,595 - IAI46_02900 0.26 -0.6
618,595 - IAI46_02900 0.26 +0.5
618,595 - IAI46_02900 0.26 +0.3
618,595 - IAI46_02900 0.26 +1.1
618,596 + IAI46_02900 0.27 +0.8
618,596 + IAI46_02900 0.27 -0.0
618,596 + IAI46_02900 0.27 +1.1
618,596 + IAI46_02900 0.27 +0.4
618,597 - IAI46_02900 0.27 +1.6
618,597 - IAI46_02900 0.27 +0.1
618,696 + IAI46_02900 0.39 +0.5
618,696 + IAI46_02900 0.39 +0.0
618,696 + IAI46_02900 0.39 -0.6
618,696 + IAI46_02900 0.39 +1.0
618,696 + IAI46_02900 0.39 +0.5
618,696 + IAI46_02900 0.39 -0.1
618,697 - IAI46_02900 0.40 -0.7
618,697 - IAI46_02900 0.40 +0.2
618,697 - IAI46_02900 0.40 -0.3
618,697 - IAI46_02900 0.40 +0.5
618,697 - IAI46_02900 0.40 +0.2
618,697 - IAI46_02900 0.40 -1.1
618,697 - IAI46_02900 0.40 +1.6
618,697 - IAI46_02900 0.40 -0.1
618,698 + IAI46_02900 0.40 -0.0
618,698 + IAI46_02900 0.40 -0.4
618,831 - IAI46_02900 0.57 +0.7
618,856 + IAI46_02900 0.60 +1.2
618,856 + IAI46_02900 0.60 +0.1
618,857 - IAI46_02900 0.60 +0.2
618,857 - IAI46_02900 0.60 +0.3
618,910 - IAI46_02900 0.67 +0.5
618,910 - IAI46_02900 0.67 -0.2
618,912 + IAI46_02900 0.67 -0.8
618,912 + IAI46_02900 0.67 +0.4
618,913 - IAI46_02900 0.67 +0.4
618,913 - IAI46_02900 0.67 +0.1
618,940 - IAI46_02900 0.71 +0.6
618,940 - IAI46_02900 0.71 -0.2
619,164 + +1.0
619,246 - +0.2
619,262 + +0.7
619,262 + +1.9
619,276 + -0.1
619,277 - +0.1
619,294 - +0.6
619,299 - +0.3
619,299 - +0.7
619,354 + +0.9
619,355 - +0.7
619,355 - +0.7
619,503 + IAI46_02905 0.10 -0.9
619,503 + IAI46_02905 0.10 -0.5
619,504 - IAI46_02905 0.10 -0.4
619,663 + IAI46_02905 0.23 +0.7
619,707 + IAI46_02905 0.26 -0.6
619,707 + IAI46_02905 0.26 +0.1
619,707 + IAI46_02905 0.26 +0.3
619,708 - IAI46_02905 0.26 +0.0
619,708 - IAI46_02905 0.26 -0.1
619,708 - IAI46_02905 0.26 +0.5
619,708 - IAI46_02905 0.26 +0.1
619,710 + IAI46_02905 0.27 -0.0
619,710 + IAI46_02905 0.27 -0.4
619,711 - IAI46_02905 0.27 -1.3
619,772 + IAI46_02905 0.31 +0.0
619,850 + IAI46_02905 0.38 +0.5
619,851 + IAI46_02905 0.38 +0.0
619,852 - IAI46_02905 0.38 +0.7
619,852 - IAI46_02905 0.38 -0.1
619,852 - IAI46_02905 0.38 +0.9
619,884 - IAI46_02905 0.40 +0.2
619,936 - IAI46_02905 0.44 -1.5
619,963 - IAI46_02905 0.47 -0.6
619,982 + IAI46_02905 0.48 -0.0
619,982 + IAI46_02905 0.48 +1.5
620,175 - IAI46_02905 0.63 -0.8
620,257 + IAI46_02905 0.70 -0.0
620,258 - IAI46_02905 0.70 +0.5
620,355 - IAI46_02905 0.77 +0.8
620,370 + IAI46_02905 0.79 -1.1
620,370 + IAI46_02905 0.79 -0.7
620,370 + IAI46_02905 0.79 +0.4
620,371 - IAI46_02905 0.79 -0.3
620,371 - IAI46_02905 0.79 +0.3
620,691 + +0.6
620,693 + +1.2
620,694 - -0.5
620,694 - -0.4
620,698 + +0.2
620,698 + -0.8
620,699 - -0.1
620,699 - -0.2
620,817 + -0.4
620,818 - -0.6
620,866 + +0.1
620,866 + -0.9
620,866 + +0.1
620,866 + +0.5
620,869 + -0.1
620,870 - -0.3
620,870 - +0.7
620,870 - +0.3
620,870 - -0.6
620,895 + -0.6
620,895 + +0.6
620,896 - +0.1
620,949 + +0.6
621,047 - +1.1
621,132 - IAI46_02910 0.16 +0.8
621,147 - IAI46_02910 0.18 +0.3
621,147 - IAI46_02910 0.18 -0.2
621,361 - IAI46_02910 0.46 -0.0
621,461 + IAI46_02910 0.58 +0.5
621,512 + IAI46_02910 0.65 +0.3
621,512 + IAI46_02910 0.65 +0.3

Or see this region's nucleotide sequence