Strain Fitness in Serratia liquefaciens MT49 around IAI46_02530

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02520 and IAI46_02525 overlap by 4 nucleotidesIAI46_02525 and IAI46_02530 overlap by 8 nucleotidesIAI46_02530 and IAI46_02535 are separated by 20 nucleotides IAI46_02520: IAI46_02520 - RidA family protein, at 544,224 to 544,664 _02520 IAI46_02525: IAI46_02525 - DUF1028 domain-containing protein, at 544,661 to 545,335 _02525 IAI46_02530: IAI46_02530 - acetylornithine deacetylase, at 545,328 to 546,476 _02530 IAI46_02535: IAI46_02535 - LysR family transcriptional regulator, at 546,497 to 547,405 _02535 Position (kb) 545 546 547Strain fitness (log2 ratio) -2 -1 0 1 2at 544.335 kb on + strand, within IAI46_02520at 544.335 kb on + strand, within IAI46_02520at 544.336 kb on - strand, within IAI46_02520at 544.336 kb on - strand, within IAI46_02520at 544.466 kb on + strand, within IAI46_02520at 544.466 kb on + strand, within IAI46_02520at 544.466 kb on + strand, within IAI46_02520at 544.466 kb on + strand, within IAI46_02520at 544.467 kb on - strand, within IAI46_02520at 544.472 kb on + strand, within IAI46_02520at 544.473 kb on - strand, within IAI46_02520at 544.485 kb on + strand, within IAI46_02520at 544.485 kb on + strand, within IAI46_02520at 544.485 kb on + strand, within IAI46_02520at 544.486 kb on - strand, within IAI46_02520at 544.486 kb on - strand, within IAI46_02520at 544.486 kb on - strand, within IAI46_02520at 544.486 kb on - strand, within IAI46_02520at 544.491 kb on - strand, within IAI46_02520at 544.503 kb on + strand, within IAI46_02520at 544.533 kb on - strand, within IAI46_02520at 544.541 kb on + strand, within IAI46_02520at 544.542 kb on - strand, within IAI46_02520at 544.542 kb on - strand, within IAI46_02520at 544.542 kb on - strand, within IAI46_02520at 544.556 kb on + strand, within IAI46_02520at 544.616 kb on + strand, within IAI46_02520at 544.619 kb on + strand, within IAI46_02520at 544.619 kb on + strand, within IAI46_02520at 544.620 kb on - strand, within IAI46_02520at 544.620 kb on - strand, within IAI46_02520at 544.660 kb on + strandat 544.660 kb on + strandat 544.660 kb on + strandat 544.661 kb on - strandat 544.661 kb on - strandat 544.872 kb on + strand, within IAI46_02525at 544.873 kb on - strand, within IAI46_02525at 544.873 kb on - strand, within IAI46_02525at 544.892 kb on - strand, within IAI46_02525at 544.911 kb on + strand, within IAI46_02525at 544.912 kb on - strand, within IAI46_02525at 544.912 kb on - strand, within IAI46_02525at 544.917 kb on + strand, within IAI46_02525at 544.918 kb on - strand, within IAI46_02525at 544.918 kb on - strand, within IAI46_02525at 544.918 kb on - strand, within IAI46_02525at 544.918 kb on - strand, within IAI46_02525at 544.946 kb on - strand, within IAI46_02525at 544.970 kb on + strand, within IAI46_02525at 544.970 kb on + strand, within IAI46_02525at 544.970 kb on + strand, within IAI46_02525at 544.970 kb on + strand, within IAI46_02525at 544.970 kb on + strand, within IAI46_02525at 544.971 kb on - strand, within IAI46_02525at 544.971 kb on - strand, within IAI46_02525at 544.971 kb on - strand, within IAI46_02525at 544.971 kb on - strand, within IAI46_02525at 544.971 kb on - strand, within IAI46_02525at 545.156 kb on - strand, within IAI46_02525at 545.171 kb on + strand, within IAI46_02525at 545.172 kb on - strand, within IAI46_02525at 545.193 kb on + strand, within IAI46_02525at 545.224 kb on + strand, within IAI46_02525at 545.252 kb on + strand, within IAI46_02525at 545.252 kb on + strand, within IAI46_02525at 545.252 kb on + strand, within IAI46_02525at 545.253 kb on - strand, within IAI46_02525at 545.253 kb on - strand, within IAI46_02525at 545.274 kb on - strandat 545.289 kb on + strandat 545.290 kb on - strandat 545.290 kb on - strandat 545.312 kb on + strandat 545.375 kb on + strandat 545.414 kb on + strandat 545.414 kb on + strandat 545.415 kb on - strandat 545.415 kb on - strandat 545.424 kb on + strandat 545.541 kb on - strand, within IAI46_02530at 545.614 kb on - strand, within IAI46_02530at 545.724 kb on + strand, within IAI46_02530at 545.752 kb on + strand, within IAI46_02530at 545.752 kb on + strand, within IAI46_02530at 545.775 kb on - strand, within IAI46_02530at 545.820 kb on - strand, within IAI46_02530at 545.846 kb on + strand, within IAI46_02530at 545.871 kb on - strand, within IAI46_02530at 545.901 kb on + strand, within IAI46_02530at 545.902 kb on - strand, within IAI46_02530at 545.902 kb on - strand, within IAI46_02530at 545.902 kb on - strand, within IAI46_02530at 545.902 kb on - strand, within IAI46_02530at 545.902 kb on - strand, within IAI46_02530at 545.903 kb on + strand, within IAI46_02530at 545.904 kb on - strand, within IAI46_02530at 545.904 kb on - strand, within IAI46_02530at 545.931 kb on + strand, within IAI46_02530at 545.957 kb on - strand, within IAI46_02530at 546.013 kb on - strand, within IAI46_02530at 546.111 kb on - strand, within IAI46_02530at 546.203 kb on + strand, within IAI46_02530at 546.203 kb on + strand, within IAI46_02530at 546.203 kb on + strand, within IAI46_02530at 546.203 kb on + strand, within IAI46_02530at 546.204 kb on - strand, within IAI46_02530at 546.204 kb on - strand, within IAI46_02530at 546.204 kb on - strand, within IAI46_02530at 546.218 kb on - strand, within IAI46_02530at 546.285 kb on - strand, within IAI46_02530at 546.331 kb on + strand, within IAI46_02530at 546.331 kb on + strand, within IAI46_02530at 546.353 kb on + strand, within IAI46_02530at 546.405 kb on + strandat 546.405 kb on + strandat 546.405 kb on + strandat 546.406 kb on - strandat 546.411 kb on - strandat 546.505 kb on + strandat 546.505 kb on + strandat 546.506 kb on - strandat 546.506 kb on - strandat 546.524 kb on - strandat 546.646 kb on - strand, within IAI46_02535at 546.646 kb on - strand, within IAI46_02535at 546.651 kb on + strand, within IAI46_02535at 546.651 kb on + strand, within IAI46_02535at 546.652 kb on - strand, within IAI46_02535at 546.652 kb on - strand, within IAI46_02535at 546.660 kb on + strand, within IAI46_02535at 546.713 kb on + strand, within IAI46_02535at 546.736 kb on + strand, within IAI46_02535at 546.736 kb on + strand, within IAI46_02535at 546.737 kb on - strand, within IAI46_02535at 546.737 kb on - strand, within IAI46_02535at 546.743 kb on + strand, within IAI46_02535at 546.743 kb on + strand, within IAI46_02535at 546.743 kb on + strand, within IAI46_02535at 546.744 kb on - strand, within IAI46_02535at 546.744 kb on - strand, within IAI46_02535at 546.745 kb on + strand, within IAI46_02535at 546.745 kb on + strand, within IAI46_02535at 546.746 kb on - strand, within IAI46_02535at 546.787 kb on - strand, within IAI46_02535at 546.787 kb on - strand, within IAI46_02535at 546.787 kb on - strand, within IAI46_02535at 546.809 kb on + strand, within IAI46_02535at 546.810 kb on - strand, within IAI46_02535at 546.810 kb on - strand, within IAI46_02535at 546.821 kb on - strand, within IAI46_02535at 546.821 kb on - strand, within IAI46_02535at 546.821 kb on - strand, within IAI46_02535at 546.821 kb on - strand, within IAI46_02535at 546.821 kb on - strand, within IAI46_02535at 546.894 kb on + strand, within IAI46_02535at 546.894 kb on + strand, within IAI46_02535at 546.895 kb on - strand, within IAI46_02535at 546.895 kb on - strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.935 kb on - strand, within IAI46_02535at 546.935 kb on - strand, within IAI46_02535at 546.935 kb on - strand, within IAI46_02535at 546.954 kb on + strand, within IAI46_02535at 546.954 kb on + strand, within IAI46_02535at 546.954 kb on + strand, within IAI46_02535at 546.955 kb on - strand, within IAI46_02535at 546.955 kb on - strand, within IAI46_02535at 547.034 kb on + strand, within IAI46_02535at 547.035 kb on - strand, within IAI46_02535at 547.054 kb on + strand, within IAI46_02535at 547.054 kb on + strand, within IAI46_02535at 547.054 kb on + strand, within IAI46_02535at 547.055 kb on - strand, within IAI46_02535at 547.165 kb on + strand, within IAI46_02535at 547.165 kb on + strand, within IAI46_02535at 547.165 kb on + strand, within IAI46_02535at 547.166 kb on - strand, within IAI46_02535at 547.166 kb on - strand, within IAI46_02535at 547.166 kb on - strand, within IAI46_02535at 547.178 kb on + strand, within IAI46_02535at 547.200 kb on + strand, within IAI46_02535at 547.290 kb on - strand, within IAI46_02535at 547.320 kb on + strandat 547.320 kb on + strandat 547.321 kb on - strandat 547.379 kb on - strandat 547.379 kb on - strandat 547.395 kb on + strandat 547.399 kb on + strandat 547.399 kb on + strandat 547.400 kb on - strandat 547.400 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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544,335 + IAI46_02520 0.25 +0.6
544,335 + IAI46_02520 0.25 -0.2
544,336 - IAI46_02520 0.25 -1.0
544,336 - IAI46_02520 0.25 +0.5
544,466 + IAI46_02520 0.55 +0.0
544,466 + IAI46_02520 0.55 -0.2
544,466 + IAI46_02520 0.55 +0.9
544,466 + IAI46_02520 0.55 +1.5
544,467 - IAI46_02520 0.55 +0.1
544,472 + IAI46_02520 0.56 +0.9
544,473 - IAI46_02520 0.56 -0.3
544,485 + IAI46_02520 0.59 +0.4
544,485 + IAI46_02520 0.59 +0.2
544,485 + IAI46_02520 0.59 -0.2
544,486 - IAI46_02520 0.59 +0.4
544,486 - IAI46_02520 0.59 -0.0
544,486 - IAI46_02520 0.59 -0.8
544,486 - IAI46_02520 0.59 -0.4
544,491 - IAI46_02520 0.61 +0.0
544,503 + IAI46_02520 0.63 -1.5
544,533 - IAI46_02520 0.70 +0.4
544,541 + IAI46_02520 0.72 -0.5
544,542 - IAI46_02520 0.72 +0.9
544,542 - IAI46_02520 0.72 -0.5
544,542 - IAI46_02520 0.72 +0.2
544,556 + IAI46_02520 0.75 +0.6
544,616 + IAI46_02520 0.89 +1.4
544,619 + IAI46_02520 0.90 +0.8
544,619 + IAI46_02520 0.90 -0.4
544,620 - IAI46_02520 0.90 +0.5
544,620 - IAI46_02520 0.90 -0.5
544,660 + +0.8
544,660 + +0.4
544,660 + +0.5
544,661 - +0.7
544,661 - +0.3
544,872 + IAI46_02525 0.31 +0.3
544,873 - IAI46_02525 0.31 +0.1
544,873 - IAI46_02525 0.31 -1.2
544,892 - IAI46_02525 0.34 +0.2
544,911 + IAI46_02525 0.37 +0.9
544,912 - IAI46_02525 0.37 -0.3
544,912 - IAI46_02525 0.37 +0.3
544,917 + IAI46_02525 0.38 +0.3
544,918 - IAI46_02525 0.38 +0.2
544,918 - IAI46_02525 0.38 -2.1
544,918 - IAI46_02525 0.38 +0.2
544,918 - IAI46_02525 0.38 +1.1
544,946 - IAI46_02525 0.42 -0.1
544,970 + IAI46_02525 0.46 +0.2
544,970 + IAI46_02525 0.46 -0.4
544,970 + IAI46_02525 0.46 +0.4
544,970 + IAI46_02525 0.46 +0.2
544,970 + IAI46_02525 0.46 +0.0
544,971 - IAI46_02525 0.46 -0.7
544,971 - IAI46_02525 0.46 +0.2
544,971 - IAI46_02525 0.46 -0.2
544,971 - IAI46_02525 0.46 +0.3
544,971 - IAI46_02525 0.46 +0.3
545,156 - IAI46_02525 0.73 +1.1
545,171 + IAI46_02525 0.76 -0.1
545,172 - IAI46_02525 0.76 +0.0
545,193 + IAI46_02525 0.79 +0.3
545,224 + IAI46_02525 0.83 -0.1
545,252 + IAI46_02525 0.88 +1.4
545,252 + IAI46_02525 0.88 -0.5
545,252 + IAI46_02525 0.88 +0.4
545,253 - IAI46_02525 0.88 +0.8
545,253 - IAI46_02525 0.88 +0.0
545,274 - +0.4
545,289 + +0.3
545,290 - +0.6
545,290 - +0.3
545,312 + -0.8
545,375 + +0.4
545,414 + -0.5
545,414 + +0.0
545,415 - -0.3
545,415 - +0.5
545,424 + +0.5
545,541 - IAI46_02530 0.19 +0.2
545,614 - IAI46_02530 0.25 +0.0
545,724 + IAI46_02530 0.34 -0.2
545,752 + IAI46_02530 0.37 +0.8
545,752 + IAI46_02530 0.37 -0.3
545,775 - IAI46_02530 0.39 -0.8
545,820 - IAI46_02530 0.43 -0.1
545,846 + IAI46_02530 0.45 +0.4
545,871 - IAI46_02530 0.47 +0.9
545,901 + IAI46_02530 0.50 +0.2
545,902 - IAI46_02530 0.50 +0.0
545,902 - IAI46_02530 0.50 -0.3
545,902 - IAI46_02530 0.50 +0.6
545,902 - IAI46_02530 0.50 -1.1
545,902 - IAI46_02530 0.50 +0.5
545,903 + IAI46_02530 0.50 -0.2
545,904 - IAI46_02530 0.50 +0.0
545,904 - IAI46_02530 0.50 -2.3
545,931 + IAI46_02530 0.52 +0.0
545,957 - IAI46_02530 0.55 +0.9
546,013 - IAI46_02530 0.60 +1.0
546,111 - IAI46_02530 0.68 +1.0
546,203 + IAI46_02530 0.76 +0.4
546,203 + IAI46_02530 0.76 -0.1
546,203 + IAI46_02530 0.76 +0.2
546,203 + IAI46_02530 0.76 -0.4
546,204 - IAI46_02530 0.76 +1.3
546,204 - IAI46_02530 0.76 -0.6
546,204 - IAI46_02530 0.76 -2.4
546,218 - IAI46_02530 0.77 -0.0
546,285 - IAI46_02530 0.83 +0.8
546,331 + IAI46_02530 0.87 -0.3
546,331 + IAI46_02530 0.87 -0.2
546,353 + IAI46_02530 0.89 -0.0
546,405 + +0.7
546,405 + +0.9
546,405 + +0.0
546,406 - +0.2
546,411 - +0.6
546,505 + +0.5
546,505 + -1.3
546,506 - +0.2
546,506 - -0.3
546,524 - -0.7
546,646 - IAI46_02535 0.16 -0.3
546,646 - IAI46_02535 0.16 +0.1
546,651 + IAI46_02535 0.17 +2.4
546,651 + IAI46_02535 0.17 +0.2
546,652 - IAI46_02535 0.17 -2.5
546,652 - IAI46_02535 0.17 -0.4
546,660 + IAI46_02535 0.18 +0.7
546,713 + IAI46_02535 0.24 -0.5
546,736 + IAI46_02535 0.26 -0.0
546,736 + IAI46_02535 0.26 -0.4
546,737 - IAI46_02535 0.26 -0.7
546,737 - IAI46_02535 0.26 +0.7
546,743 + IAI46_02535 0.27 +0.6
546,743 + IAI46_02535 0.27 +0.5
546,743 + IAI46_02535 0.27 +0.5
546,744 - IAI46_02535 0.27 +1.1
546,744 - IAI46_02535 0.27 -1.0
546,745 + IAI46_02535 0.27 +0.4
546,745 + IAI46_02535 0.27 -0.4
546,746 - IAI46_02535 0.27 -0.8
546,787 - IAI46_02535 0.32 +0.2
546,787 - IAI46_02535 0.32 +0.0
546,787 - IAI46_02535 0.32 -0.2
546,809 + IAI46_02535 0.34 +0.5
546,810 - IAI46_02535 0.34 +0.4
546,810 - IAI46_02535 0.34 +0.0
546,821 - IAI46_02535 0.36 +0.4
546,821 - IAI46_02535 0.36 +0.2
546,821 - IAI46_02535 0.36 -0.3
546,821 - IAI46_02535 0.36 -0.6
546,821 - IAI46_02535 0.36 -0.4
546,894 + IAI46_02535 0.44 +0.2
546,894 + IAI46_02535 0.44 -0.3
546,895 - IAI46_02535 0.44 -0.3
546,895 - IAI46_02535 0.44 +0.8
546,934 + IAI46_02535 0.48 +0.4
546,934 + IAI46_02535 0.48 +2.0
546,934 + IAI46_02535 0.48 -0.3
546,934 + IAI46_02535 0.48 +0.6
546,934 + IAI46_02535 0.48 -0.2
546,934 + IAI46_02535 0.48 +0.5
546,934 + IAI46_02535 0.48 -0.6
546,934 + IAI46_02535 0.48 -1.4
546,934 + IAI46_02535 0.48 +0.3
546,935 - IAI46_02535 0.48 +1.4
546,935 - IAI46_02535 0.48 +0.5
546,935 - IAI46_02535 0.48 +1.1
546,954 + IAI46_02535 0.50 +0.7
546,954 + IAI46_02535 0.50 -1.3
546,954 + IAI46_02535 0.50 +1.2
546,955 - IAI46_02535 0.50 -0.9
546,955 - IAI46_02535 0.50 +1.6
547,034 + IAI46_02535 0.59 -0.1
547,035 - IAI46_02535 0.59 -1.2
547,054 + IAI46_02535 0.61 +0.0
547,054 + IAI46_02535 0.61 +0.1
547,054 + IAI46_02535 0.61 +1.1
547,055 - IAI46_02535 0.61 -0.4
547,165 + IAI46_02535 0.73 +0.8
547,165 + IAI46_02535 0.73 +0.6
547,165 + IAI46_02535 0.73 +0.1
547,166 - IAI46_02535 0.74 -0.2
547,166 - IAI46_02535 0.74 -0.7
547,166 - IAI46_02535 0.74 -0.1
547,178 + IAI46_02535 0.75 +0.2
547,200 + IAI46_02535 0.77 -2.0
547,290 - IAI46_02535 0.87 +0.5
547,320 + -0.8
547,320 + -0.4
547,321 - +0.5
547,379 - -0.2
547,379 - -0.4
547,395 + +0.4
547,399 + -0.3
547,399 + +0.0
547,400 - -0.5
547,400 - +0.1

Or see this region's nucleotide sequence