Strain Fitness in Serratia liquefaciens MT49 around IAI46_02515

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02510 and IAI46_02515 are separated by 413 nucleotidesIAI46_02515 and IAI46_02520 are separated by 24 nucleotidesIAI46_02520 and IAI46_02525 overlap by 4 nucleotides IAI46_02510: IAI46_02510 - NAD(P)-binding domain-containing protein, at 541,123 to 542,391 _02510 IAI46_02515: IAI46_02515 - cytosine permease, at 542,805 to 544,199 _02515 IAI46_02520: IAI46_02520 - RidA family protein, at 544,224 to 544,664 _02520 IAI46_02525: IAI46_02525 - DUF1028 domain-containing protein, at 544,661 to 545,335 _02525 Position (kb) 542 543 544 545Strain fitness (log2 ratio) -2 -1 0 1 2at 541.809 kb on - strand, within IAI46_02510at 541.809 kb on - strand, within IAI46_02510at 541.831 kb on + strand, within IAI46_02510at 541.831 kb on + strand, within IAI46_02510at 541.908 kb on + strand, within IAI46_02510at 541.913 kb on + strand, within IAI46_02510at 541.913 kb on + strand, within IAI46_02510at 542.081 kb on - strand, within IAI46_02510at 542.081 kb on - strand, within IAI46_02510at 542.081 kb on - strand, within IAI46_02510at 542.081 kb on - strand, within IAI46_02510at 542.123 kb on + strand, within IAI46_02510at 542.124 kb on - strand, within IAI46_02510at 542.178 kb on + strand, within IAI46_02510at 542.233 kb on + strand, within IAI46_02510at 542.234 kb on - strand, within IAI46_02510at 542.409 kb on - strandat 542.432 kb on - strandat 542.432 kb on - strandat 542.433 kb on + strandat 542.434 kb on - strandat 542.467 kb on - strandat 542.492 kb on + strandat 542.577 kb on - strandat 542.611 kb on + strandat 542.611 kb on + strandat 542.785 kb on + strandat 542.789 kb on + strandat 542.856 kb on + strandat 542.856 kb on + strandat 542.857 kb on - strandat 542.857 kb on - strandat 542.857 kb on - strandat 542.859 kb on - strandat 543.000 kb on - strand, within IAI46_02515at 543.147 kb on + strand, within IAI46_02515at 543.147 kb on + strand, within IAI46_02515at 543.147 kb on + strand, within IAI46_02515at 543.148 kb on - strand, within IAI46_02515at 543.148 kb on - strand, within IAI46_02515at 543.148 kb on - strand, within IAI46_02515at 543.148 kb on - strand, within IAI46_02515at 543.185 kb on + strand, within IAI46_02515at 543.232 kb on + strand, within IAI46_02515at 543.285 kb on - strand, within IAI46_02515at 543.296 kb on + strand, within IAI46_02515at 543.297 kb on - strand, within IAI46_02515at 543.350 kb on + strand, within IAI46_02515at 543.350 kb on + strand, within IAI46_02515at 543.350 kb on + strand, within IAI46_02515at 543.350 kb on + strand, within IAI46_02515at 543.351 kb on - strand, within IAI46_02515at 543.351 kb on - strand, within IAI46_02515at 543.356 kb on + strand, within IAI46_02515at 543.364 kb on + strand, within IAI46_02515at 543.364 kb on + strand, within IAI46_02515at 543.364 kb on + strand, within IAI46_02515at 543.364 kb on + strand, within IAI46_02515at 543.364 kb on + strand, within IAI46_02515at 543.364 kb on + strand, within IAI46_02515at 543.364 kb on + strand, within IAI46_02515at 543.365 kb on - strand, within IAI46_02515at 543.463 kb on - strand, within IAI46_02515at 543.484 kb on - strand, within IAI46_02515at 543.484 kb on - strand, within IAI46_02515at 543.528 kb on + strand, within IAI46_02515at 543.528 kb on + strand, within IAI46_02515at 543.529 kb on - strand, within IAI46_02515at 543.583 kb on + strand, within IAI46_02515at 543.584 kb on - strand, within IAI46_02515at 543.584 kb on - strand, within IAI46_02515at 543.698 kb on + strand, within IAI46_02515at 543.699 kb on - strand, within IAI46_02515at 543.705 kb on + strand, within IAI46_02515at 543.706 kb on - strand, within IAI46_02515at 543.761 kb on - strand, within IAI46_02515at 543.765 kb on - strand, within IAI46_02515at 543.765 kb on - strand, within IAI46_02515at 543.765 kb on - strand, within IAI46_02515at 543.765 kb on - strand, within IAI46_02515at 543.799 kb on + strand, within IAI46_02515at 543.800 kb on - strand, within IAI46_02515at 543.824 kb on + strand, within IAI46_02515at 543.825 kb on - strand, within IAI46_02515at 543.825 kb on - strand, within IAI46_02515at 543.828 kb on + strand, within IAI46_02515at 543.829 kb on - strand, within IAI46_02515at 543.829 kb on - strand, within IAI46_02515at 543.829 kb on - strand, within IAI46_02515at 543.829 kb on - strand, within IAI46_02515at 543.829 kb on - strand, within IAI46_02515at 543.830 kb on + strand, within IAI46_02515at 543.831 kb on - strand, within IAI46_02515at 543.936 kb on - strand, within IAI46_02515at 543.936 kb on - strand, within IAI46_02515at 543.945 kb on + strand, within IAI46_02515at 543.945 kb on + strand, within IAI46_02515at 543.946 kb on - strand, within IAI46_02515at 543.953 kb on + strand, within IAI46_02515at 543.953 kb on + strand, within IAI46_02515at 543.953 kb on + strand, within IAI46_02515at 543.954 kb on - strand, within IAI46_02515at 543.954 kb on - strand, within IAI46_02515at 543.954 kb on - strand, within IAI46_02515at 543.954 kb on - strand, within IAI46_02515at 543.981 kb on - strand, within IAI46_02515at 543.981 kb on - strand, within IAI46_02515at 543.984 kb on + strand, within IAI46_02515at 543.984 kb on + strand, within IAI46_02515at 543.985 kb on - strand, within IAI46_02515at 543.985 kb on - strand, within IAI46_02515at 543.985 kb on - strand, within IAI46_02515at 543.985 kb on - strand, within IAI46_02515at 543.990 kb on + strand, within IAI46_02515at 543.991 kb on - strand, within IAI46_02515at 543.996 kb on - strand, within IAI46_02515at 543.996 kb on - strand, within IAI46_02515at 544.017 kb on + strand, within IAI46_02515at 544.018 kb on - strand, within IAI46_02515at 544.018 kb on - strand, within IAI46_02515at 544.024 kb on + strand, within IAI46_02515at 544.025 kb on - strand, within IAI46_02515at 544.025 kb on - strand, within IAI46_02515at 544.028 kb on + strand, within IAI46_02515at 544.028 kb on + strand, within IAI46_02515at 544.055 kb on + strand, within IAI46_02515at 544.063 kb on + strandat 544.063 kb on + strandat 544.063 kb on + strandat 544.064 kb on - strandat 544.064 kb on - strandat 544.066 kb on - strandat 544.066 kb on - strandat 544.066 kb on - strandat 544.088 kb on + strandat 544.143 kb on + strandat 544.143 kb on + strandat 544.143 kb on + strandat 544.146 kb on + strandat 544.197 kb on + strandat 544.197 kb on + strandat 544.198 kb on - strandat 544.210 kb on - strandat 544.230 kb on - strandat 544.234 kb on + strandat 544.234 kb on + strandat 544.235 kb on - strandat 544.235 kb on - strandat 544.259 kb on + strandat 544.262 kb on + strandat 544.263 kb on - strandat 544.265 kb on + strandat 544.266 kb on - strandat 544.281 kb on - strand, within IAI46_02520at 544.281 kb on - strand, within IAI46_02520at 544.335 kb on + strand, within IAI46_02520at 544.335 kb on + strand, within IAI46_02520at 544.336 kb on - strand, within IAI46_02520at 544.336 kb on - strand, within IAI46_02520at 544.466 kb on + strand, within IAI46_02520at 544.466 kb on + strand, within IAI46_02520at 544.466 kb on + strand, within IAI46_02520at 544.466 kb on + strand, within IAI46_02520at 544.467 kb on - strand, within IAI46_02520at 544.472 kb on + strand, within IAI46_02520at 544.473 kb on - strand, within IAI46_02520at 544.485 kb on + strand, within IAI46_02520at 544.485 kb on + strand, within IAI46_02520at 544.485 kb on + strand, within IAI46_02520at 544.486 kb on - strand, within IAI46_02520at 544.486 kb on - strand, within IAI46_02520at 544.486 kb on - strand, within IAI46_02520at 544.486 kb on - strand, within IAI46_02520at 544.491 kb on - strand, within IAI46_02520at 544.503 kb on + strand, within IAI46_02520at 544.533 kb on - strand, within IAI46_02520at 544.541 kb on + strand, within IAI46_02520at 544.542 kb on - strand, within IAI46_02520at 544.542 kb on - strand, within IAI46_02520at 544.542 kb on - strand, within IAI46_02520at 544.556 kb on + strand, within IAI46_02520at 544.616 kb on + strand, within IAI46_02520at 544.619 kb on + strand, within IAI46_02520at 544.619 kb on + strand, within IAI46_02520at 544.620 kb on - strand, within IAI46_02520at 544.620 kb on - strand, within IAI46_02520at 544.660 kb on + strandat 544.660 kb on + strandat 544.660 kb on + strandat 544.661 kb on - strandat 544.661 kb on - strandat 544.872 kb on + strand, within IAI46_02525at 544.873 kb on - strand, within IAI46_02525at 544.873 kb on - strand, within IAI46_02525at 544.892 kb on - strand, within IAI46_02525at 544.911 kb on + strand, within IAI46_02525at 544.912 kb on - strand, within IAI46_02525at 544.912 kb on - strand, within IAI46_02525at 544.917 kb on + strand, within IAI46_02525at 544.918 kb on - strand, within IAI46_02525at 544.918 kb on - strand, within IAI46_02525at 544.918 kb on - strand, within IAI46_02525at 544.918 kb on - strand, within IAI46_02525at 544.946 kb on - strand, within IAI46_02525at 544.970 kb on + strand, within IAI46_02525at 544.970 kb on + strand, within IAI46_02525at 544.970 kb on + strand, within IAI46_02525at 544.970 kb on + strand, within IAI46_02525at 544.970 kb on + strand, within IAI46_02525at 544.971 kb on - strand, within IAI46_02525at 544.971 kb on - strand, within IAI46_02525at 544.971 kb on - strand, within IAI46_02525at 544.971 kb on - strand, within IAI46_02525at 544.971 kb on - strand, within IAI46_02525at 545.156 kb on - strand, within IAI46_02525at 545.171 kb on + strand, within IAI46_02525at 545.172 kb on - strand, within IAI46_02525at 545.193 kb on + strand, within IAI46_02525

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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541,809 - IAI46_02510 0.54 +0.1
541,809 - IAI46_02510 0.54 -0.7
541,831 + IAI46_02510 0.56 -0.0
541,831 + IAI46_02510 0.56 -0.1
541,908 + IAI46_02510 0.62 -0.2
541,913 + IAI46_02510 0.62 +0.2
541,913 + IAI46_02510 0.62 -0.2
542,081 - IAI46_02510 0.75 -0.5
542,081 - IAI46_02510 0.75 -1.2
542,081 - IAI46_02510 0.75 -0.4
542,081 - IAI46_02510 0.75 -1.8
542,123 + IAI46_02510 0.79 +0.2
542,124 - IAI46_02510 0.79 +0.2
542,178 + IAI46_02510 0.83 +1.2
542,233 + IAI46_02510 0.87 +1.4
542,234 - IAI46_02510 0.88 -0.1
542,409 - -0.1
542,432 - +1.0
542,432 - -2.6
542,433 + -1.3
542,434 - +1.4
542,467 - +0.0
542,492 + -0.7
542,577 - -0.6
542,611 + -1.8
542,611 + -1.0
542,785 + +1.3
542,789 + +1.6
542,856 + -0.2
542,856 + +0.9
542,857 - +0.3
542,857 - +0.0
542,857 - +0.5
542,859 - +0.3
543,000 - IAI46_02515 0.14 +0.5
543,147 + IAI46_02515 0.25 +0.3
543,147 + IAI46_02515 0.25 +0.1
543,147 + IAI46_02515 0.25 +0.4
543,148 - IAI46_02515 0.25 +0.5
543,148 - IAI46_02515 0.25 +0.9
543,148 - IAI46_02515 0.25 -0.5
543,148 - IAI46_02515 0.25 -0.5
543,185 + IAI46_02515 0.27 +0.6
543,232 + IAI46_02515 0.31 +0.3
543,285 - IAI46_02515 0.34 +0.0
543,296 + IAI46_02515 0.35 +1.0
543,297 - IAI46_02515 0.35 -0.6
543,350 + IAI46_02515 0.39 -0.5
543,350 + IAI46_02515 0.39 +0.3
543,350 + IAI46_02515 0.39 -0.2
543,350 + IAI46_02515 0.39 +0.8
543,351 - IAI46_02515 0.39 +0.4
543,351 - IAI46_02515 0.39 -0.3
543,356 + IAI46_02515 0.39 -1.1
543,364 + IAI46_02515 0.40 +0.3
543,364 + IAI46_02515 0.40 +0.2
543,364 + IAI46_02515 0.40 -0.6
543,364 + IAI46_02515 0.40 +0.6
543,364 + IAI46_02515 0.40 +0.8
543,364 + IAI46_02515 0.40 +0.3
543,364 + IAI46_02515 0.40 -0.3
543,365 - IAI46_02515 0.40 +0.3
543,463 - IAI46_02515 0.47 +0.3
543,484 - IAI46_02515 0.49 -0.9
543,484 - IAI46_02515 0.49 +0.0
543,528 + IAI46_02515 0.52 -0.5
543,528 + IAI46_02515 0.52 -0.8
543,529 - IAI46_02515 0.52 -0.7
543,583 + IAI46_02515 0.56 +0.0
543,584 - IAI46_02515 0.56 -0.7
543,584 - IAI46_02515 0.56 -0.1
543,698 + IAI46_02515 0.64 -0.6
543,699 - IAI46_02515 0.64 -1.2
543,705 + IAI46_02515 0.65 -0.8
543,706 - IAI46_02515 0.65 -0.4
543,761 - IAI46_02515 0.69 -0.6
543,765 - IAI46_02515 0.69 +0.7
543,765 - IAI46_02515 0.69 -0.6
543,765 - IAI46_02515 0.69 -0.7
543,765 - IAI46_02515 0.69 +0.3
543,799 + IAI46_02515 0.71 +0.3
543,800 - IAI46_02515 0.71 +0.1
543,824 + IAI46_02515 0.73 -0.7
543,825 - IAI46_02515 0.73 -0.0
543,825 - IAI46_02515 0.73 -0.3
543,828 + IAI46_02515 0.73 -0.7
543,829 - IAI46_02515 0.73 -1.0
543,829 - IAI46_02515 0.73 +0.3
543,829 - IAI46_02515 0.73 +0.8
543,829 - IAI46_02515 0.73 +0.1
543,829 - IAI46_02515 0.73 -0.6
543,830 + IAI46_02515 0.73 -0.8
543,831 - IAI46_02515 0.74 +1.5
543,936 - IAI46_02515 0.81 +0.1
543,936 - IAI46_02515 0.81 -0.6
543,945 + IAI46_02515 0.82 -0.2
543,945 + IAI46_02515 0.82 -0.1
543,946 - IAI46_02515 0.82 +0.4
543,953 + IAI46_02515 0.82 -0.6
543,953 + IAI46_02515 0.82 -0.6
543,953 + IAI46_02515 0.82 +0.1
543,954 - IAI46_02515 0.82 +1.0
543,954 - IAI46_02515 0.82 +1.1
543,954 - IAI46_02515 0.82 -0.2
543,954 - IAI46_02515 0.82 -0.2
543,981 - IAI46_02515 0.84 -0.4
543,981 - IAI46_02515 0.84 -0.6
543,984 + IAI46_02515 0.85 +0.4
543,984 + IAI46_02515 0.85 -0.7
543,985 - IAI46_02515 0.85 -0.1
543,985 - IAI46_02515 0.85 +0.0
543,985 - IAI46_02515 0.85 +0.2
543,985 - IAI46_02515 0.85 -0.3
543,990 + IAI46_02515 0.85 -0.7
543,991 - IAI46_02515 0.85 -0.1
543,996 - IAI46_02515 0.85 -0.6
543,996 - IAI46_02515 0.85 -0.3
544,017 + IAI46_02515 0.87 +0.3
544,018 - IAI46_02515 0.87 +2.7
544,018 - IAI46_02515 0.87 -0.2
544,024 + IAI46_02515 0.87 -0.4
544,025 - IAI46_02515 0.87 +1.4
544,025 - IAI46_02515 0.87 -0.8
544,028 + IAI46_02515 0.88 +0.8
544,028 + IAI46_02515 0.88 -0.2
544,055 + IAI46_02515 0.90 -0.6
544,063 + +0.4
544,063 + -0.6
544,063 + -0.6
544,064 - -1.5
544,064 - -0.5
544,066 - -0.2
544,066 - -0.3
544,066 - -0.5
544,088 + +0.9
544,143 + -0.3
544,143 + -0.8
544,143 + -0.1
544,146 + -0.1
544,197 + +0.2
544,197 + -0.7
544,198 - -0.3
544,210 - -0.1
544,230 - -0.2
544,234 + -0.1
544,234 + +1.0
544,235 - +0.2
544,235 - -0.1
544,259 + -0.5
544,262 + -0.4
544,263 - +0.3
544,265 + -1.0
544,266 - -0.0
544,281 - IAI46_02520 0.13 +0.1
544,281 - IAI46_02520 0.13 -0.5
544,335 + IAI46_02520 0.25 +0.6
544,335 + IAI46_02520 0.25 -0.2
544,336 - IAI46_02520 0.25 -1.0
544,336 - IAI46_02520 0.25 +0.5
544,466 + IAI46_02520 0.55 +0.0
544,466 + IAI46_02520 0.55 -0.2
544,466 + IAI46_02520 0.55 +0.9
544,466 + IAI46_02520 0.55 +1.5
544,467 - IAI46_02520 0.55 +0.1
544,472 + IAI46_02520 0.56 +0.9
544,473 - IAI46_02520 0.56 -0.3
544,485 + IAI46_02520 0.59 +0.4
544,485 + IAI46_02520 0.59 +0.2
544,485 + IAI46_02520 0.59 -0.2
544,486 - IAI46_02520 0.59 +0.4
544,486 - IAI46_02520 0.59 -0.0
544,486 - IAI46_02520 0.59 -0.8
544,486 - IAI46_02520 0.59 -0.4
544,491 - IAI46_02520 0.61 +0.0
544,503 + IAI46_02520 0.63 -1.5
544,533 - IAI46_02520 0.70 +0.4
544,541 + IAI46_02520 0.72 -0.5
544,542 - IAI46_02520 0.72 +0.9
544,542 - IAI46_02520 0.72 -0.5
544,542 - IAI46_02520 0.72 +0.2
544,556 + IAI46_02520 0.75 +0.6
544,616 + IAI46_02520 0.89 +1.4
544,619 + IAI46_02520 0.90 +0.8
544,619 + IAI46_02520 0.90 -0.4
544,620 - IAI46_02520 0.90 +0.5
544,620 - IAI46_02520 0.90 -0.5
544,660 + +0.8
544,660 + +0.4
544,660 + +0.5
544,661 - +0.7
544,661 - +0.3
544,872 + IAI46_02525 0.31 +0.3
544,873 - IAI46_02525 0.31 +0.1
544,873 - IAI46_02525 0.31 -1.2
544,892 - IAI46_02525 0.34 +0.2
544,911 + IAI46_02525 0.37 +0.9
544,912 - IAI46_02525 0.37 -0.3
544,912 - IAI46_02525 0.37 +0.3
544,917 + IAI46_02525 0.38 +0.3
544,918 - IAI46_02525 0.38 +0.2
544,918 - IAI46_02525 0.38 -2.1
544,918 - IAI46_02525 0.38 +0.2
544,918 - IAI46_02525 0.38 +1.1
544,946 - IAI46_02525 0.42 -0.1
544,970 + IAI46_02525 0.46 +0.2
544,970 + IAI46_02525 0.46 -0.4
544,970 + IAI46_02525 0.46 +0.4
544,970 + IAI46_02525 0.46 +0.2
544,970 + IAI46_02525 0.46 +0.0
544,971 - IAI46_02525 0.46 -0.7
544,971 - IAI46_02525 0.46 +0.2
544,971 - IAI46_02525 0.46 -0.2
544,971 - IAI46_02525 0.46 +0.3
544,971 - IAI46_02525 0.46 +0.3
545,156 - IAI46_02525 0.73 +1.1
545,171 + IAI46_02525 0.76 -0.1
545,172 - IAI46_02525 0.76 +0.0
545,193 + IAI46_02525 0.79 +0.3

Or see this region's nucleotide sequence