Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4445

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4444 and EX28DRAFT_4445 are separated by 45 nucleotidesEX28DRAFT_4445 and EX28DRAFT_4446 are separated by 152 nucleotides EX28DRAFT_4444: EX28DRAFT_4444 - threonine ammonia-lyase, biosynthetic, long form, at 8,675 to 10,222 _4444 EX28DRAFT_4445: EX28DRAFT_4445 - Transcriptional regulator, at 10,268 to 11,158 _4445 EX28DRAFT_4446: EX28DRAFT_4446 - ketol-acid reductoisomerase (EC 1.1.1.86), at 11,311 to 12,786 _4446 Position (kb) 10 11 12Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 9.299 kb on - strand, within EX28DRAFT_4444at 9.449 kb on + strand, within EX28DRAFT_4444at 9.475 kb on + strand, within EX28DRAFT_4444at 9.485 kb on - strand, within EX28DRAFT_4444at 9.778 kb on + strand, within EX28DRAFT_4444at 9.779 kb on - strand, within EX28DRAFT_4444at 9.811 kb on + strand, within EX28DRAFT_4444at 9.939 kb on - strand, within EX28DRAFT_4444at 10.054 kb on + strand, within EX28DRAFT_4444at 10.055 kb on - strand, within EX28DRAFT_4444at 10.166 kb on + strandat 10.238 kb on + strandat 10.303 kb on + strandat 10.501 kb on - strand, within EX28DRAFT_4445at 10.579 kb on + strand, within EX28DRAFT_4445at 10.580 kb on - strand, within EX28DRAFT_4445at 10.849 kb on + strand, within EX28DRAFT_4445at 10.851 kb on + strand, within EX28DRAFT_4445at 11.150 kb on + strandat 11.151 kb on - strandat 11.242 kb on + strandat 11.252 kb on - strandat 11.281 kb on + strandat 11.281 kb on + strandat 11.281 kb on + strandat 11.282 kb on - strandat 11.303 kb on + strandat 11.303 kb on + strandat 11.303 kb on + strandat 11.320 kb on + strandat 11.320 kb on + strandat 11.321 kb on - strandat 11.321 kb on - strandat 11.325 kb on + strandat 11.328 kb on + strandat 11.329 kb on - strandat 11.584 kb on + strand, within EX28DRAFT_4446at 11.585 kb on - strand, within EX28DRAFT_4446at 11.585 kb on - strand, within EX28DRAFT_4446at 11.663 kb on + strand, within EX28DRAFT_4446at 11.793 kb on - strand, within EX28DRAFT_4446at 11.804 kb on - strand, within EX28DRAFT_4446at 11.804 kb on - strand, within EX28DRAFT_4446at 12.120 kb on + strand, within EX28DRAFT_4446at 12.120 kb on + strand, within EX28DRAFT_4446at 12.120 kb on + strand, within EX28DRAFT_4446at 12.121 kb on - strand, within EX28DRAFT_4446at 12.121 kb on - strand, within EX28DRAFT_4446at 12.121 kb on - strand, within EX28DRAFT_4446

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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9,299 - EX28DRAFT_4444 0.40 -4.7
9,449 + EX28DRAFT_4444 0.50 -2.0
9,475 + EX28DRAFT_4444 0.52 -1.0
9,485 - EX28DRAFT_4444 0.52 -3.0
9,778 + EX28DRAFT_4444 0.71 -3.2
9,779 - EX28DRAFT_4444 0.71 -1.6
9,811 + EX28DRAFT_4444 0.73 -4.4
9,939 - EX28DRAFT_4444 0.82 -3.0
10,054 + EX28DRAFT_4444 0.89 -4.8
10,055 - EX28DRAFT_4444 0.89 -4.7
10,166 + -2.3
10,238 + +0.2
10,303 + -2.6
10,501 - EX28DRAFT_4445 0.26 -1.7
10,579 + EX28DRAFT_4445 0.35 -3.0
10,580 - EX28DRAFT_4445 0.35 -2.4
10,849 + EX28DRAFT_4445 0.65 -2.7
10,851 + EX28DRAFT_4445 0.65 -0.8
11,150 + -1.7
11,151 - -2.1
11,242 + -1.7
11,252 - -5.7
11,281 + -1.6
11,281 + -2.1
11,281 + -1.6
11,282 - -2.4
11,303 + -4.4
11,303 + -2.0
11,303 + -3.7
11,320 + -4.6
11,320 + -4.2
11,321 - -1.4
11,321 - -0.9
11,325 + -2.7
11,328 + -4.9
11,329 - -2.0
11,584 + EX28DRAFT_4446 0.18 -3.8
11,585 - EX28DRAFT_4446 0.19 -4.4
11,585 - EX28DRAFT_4446 0.19 -4.3
11,663 + EX28DRAFT_4446 0.24 -1.2
11,793 - EX28DRAFT_4446 0.33 -4.8
11,804 - EX28DRAFT_4446 0.33 -2.4
11,804 - EX28DRAFT_4446 0.33 -6.7
12,120 + EX28DRAFT_4446 0.55 -5.7
12,120 + EX28DRAFT_4446 0.55 -3.4
12,120 + EX28DRAFT_4446 0.55 -2.6
12,121 - EX28DRAFT_4446 0.55 -5.6
12,121 - EX28DRAFT_4446 0.55 -2.7
12,121 - EX28DRAFT_4446 0.55 -4.2

Or see this region's nucleotide sequence