Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4443

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4442 and EX28DRAFT_4443 are separated by 59 nucleotidesEX28DRAFT_4443 and EX28DRAFT_4444 overlap by 1 nucleotides EX28DRAFT_4442: EX28DRAFT_4442 - branched-chain amino acid aminotransferase, group I, at 5,836 to 6,765 _4442 EX28DRAFT_4443: EX28DRAFT_4443 - dihydroxy-acid dehydratase, at 6,825 to 8,675 _4443 EX28DRAFT_4444: EX28DRAFT_4444 - threonine ammonia-lyase, biosynthetic, long form, at 8,675 to 10,222 _4444 Position (kb) 6 7 8 9Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 5.857 kb on + strandat 5.858 kb on - strandat 5.929 kb on + strand, within EX28DRAFT_4442at 5.929 kb on + strand, within EX28DRAFT_4442at 5.930 kb on - strand, within EX28DRAFT_4442at 5.935 kb on - strand, within EX28DRAFT_4442at 5.942 kb on + strand, within EX28DRAFT_4442at 5.943 kb on - strand, within EX28DRAFT_4442at 5.943 kb on - strand, within EX28DRAFT_4442at 5.962 kb on + strand, within EX28DRAFT_4442at 5.963 kb on - strand, within EX28DRAFT_4442at 6.182 kb on - strand, within EX28DRAFT_4442at 6.184 kb on - strand, within EX28DRAFT_4442at 6.329 kb on - strand, within EX28DRAFT_4442at 6.407 kb on - strand, within EX28DRAFT_4442at 6.407 kb on - strand, within EX28DRAFT_4442at 6.407 kb on - strand, within EX28DRAFT_4442at 6.453 kb on + strand, within EX28DRAFT_4442at 6.546 kb on - strand, within EX28DRAFT_4442at 6.546 kb on - strand, within EX28DRAFT_4442at 6.577 kb on + strand, within EX28DRAFT_4442at 6.688 kb on - strandat 6.732 kb on + strandat 6.733 kb on - strandat 6.737 kb on - strandat 6.756 kb on + strandat 6.764 kb on - strandat 6.769 kb on + strandat 6.770 kb on - strandat 6.797 kb on + strandat 6.798 kb on - strandat 6.801 kb on + strandat 6.802 kb on - strandat 6.802 kb on - strandat 6.819 kb on + strandat 6.830 kb on + strandat 6.830 kb on + strandat 6.831 kb on - strandat 6.831 kb on - strandat 6.831 kb on - strandat 6.831 kb on - strandat 6.834 kb on + strandat 6.835 kb on - strandat 6.835 kb on - strandat 6.864 kb on - strandat 7.140 kb on + strand, within EX28DRAFT_4443at 7.140 kb on + strand, within EX28DRAFT_4443at 7.140 kb on + strand, within EX28DRAFT_4443at 7.140 kb on + strand, within EX28DRAFT_4443at 7.140 kb on + strand, within EX28DRAFT_4443at 7.141 kb on - strand, within EX28DRAFT_4443at 7.141 kb on - strand, within EX28DRAFT_4443at 7.142 kb on + strand, within EX28DRAFT_4443at 7.142 kb on + strand, within EX28DRAFT_4443at 7.142 kb on + strand, within EX28DRAFT_4443at 7.142 kb on + strand, within EX28DRAFT_4443at 7.143 kb on - strand, within EX28DRAFT_4443at 7.143 kb on - strand, within EX28DRAFT_4443at 7.143 kb on - strand, within EX28DRAFT_4443at 7.143 kb on - strand, within EX28DRAFT_4443at 7.143 kb on - strand, within EX28DRAFT_4443at 7.235 kb on + strand, within EX28DRAFT_4443at 7.236 kb on - strand, within EX28DRAFT_4443at 7.236 kb on - strand, within EX28DRAFT_4443at 7.563 kb on + strand, within EX28DRAFT_4443at 7.563 kb on + strand, within EX28DRAFT_4443at 7.564 kb on - strand, within EX28DRAFT_4443at 7.564 kb on - strand, within EX28DRAFT_4443at 7.760 kb on + strand, within EX28DRAFT_4443at 7.761 kb on - strand, within EX28DRAFT_4443at 7.761 kb on - strand, within EX28DRAFT_4443at 7.785 kb on + strand, within EX28DRAFT_4443at 7.786 kb on - strand, within EX28DRAFT_4443at 7.791 kb on - strand, within EX28DRAFT_4443at 7.801 kb on + strand, within EX28DRAFT_4443at 7.802 kb on - strand, within EX28DRAFT_4443at 7.802 kb on - strand, within EX28DRAFT_4443at 8.064 kb on + strand, within EX28DRAFT_4443at 8.100 kb on + strand, within EX28DRAFT_4443at 8.188 kb on - strand, within EX28DRAFT_4443at 8.255 kb on + strand, within EX28DRAFT_4443at 8.256 kb on - strand, within EX28DRAFT_4443at 8.328 kb on - strand, within EX28DRAFT_4443at 8.661 kb on - strandat 8.753 kb on + strandat 8.753 kb on + strandat 8.754 kb on - strandat 9.299 kb on - strand, within EX28DRAFT_4444at 9.449 kb on + strand, within EX28DRAFT_4444at 9.475 kb on + strand, within EX28DRAFT_4444at 9.485 kb on - strand, within EX28DRAFT_4444

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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5,857 + -1.0
5,858 - -3.2
5,929 + EX28DRAFT_4442 0.10 -0.2
5,929 + EX28DRAFT_4442 0.10 +0.4
5,930 - EX28DRAFT_4442 0.10 -2.0
5,935 - EX28DRAFT_4442 0.11 -3.9
5,942 + EX28DRAFT_4442 0.11 +1.0
5,943 - EX28DRAFT_4442 0.12 -1.7
5,943 - EX28DRAFT_4442 0.12 -2.4
5,962 + EX28DRAFT_4442 0.14 -0.8
5,963 - EX28DRAFT_4442 0.14 -5.1
6,182 - EX28DRAFT_4442 0.37 -2.9
6,184 - EX28DRAFT_4442 0.37 -4.3
6,329 - EX28DRAFT_4442 0.53 -3.2
6,407 - EX28DRAFT_4442 0.61 -4.4
6,407 - EX28DRAFT_4442 0.61 -5.7
6,407 - EX28DRAFT_4442 0.61 -5.0
6,453 + EX28DRAFT_4442 0.66 -1.6
6,546 - EX28DRAFT_4442 0.76 -2.6
6,546 - EX28DRAFT_4442 0.76 -4.2
6,577 + EX28DRAFT_4442 0.80 +0.6
6,688 - -3.3
6,732 + -0.4
6,733 - -4.1
6,737 - -0.3
6,756 + +0.1
6,764 - -2.2
6,769 + -0.7
6,770 - -2.5
6,797 + -0.9
6,798 - -4.0
6,801 + -0.2
6,802 - -4.4
6,802 - -3.8
6,819 + -4.8
6,830 + -1.7
6,830 + -3.1
6,831 - -3.2
6,831 - -2.4
6,831 - -2.0
6,831 - -1.4
6,834 + -5.0
6,835 - -5.2
6,835 - -4.0
6,864 - -2.1
7,140 + EX28DRAFT_4443 0.17 -2.0
7,140 + EX28DRAFT_4443 0.17 -3.6
7,140 + EX28DRAFT_4443 0.17 -1.8
7,140 + EX28DRAFT_4443 0.17 -3.7
7,140 + EX28DRAFT_4443 0.17 -3.4
7,141 - EX28DRAFT_4443 0.17 -5.7
7,141 - EX28DRAFT_4443 0.17 -2.1
7,142 + EX28DRAFT_4443 0.17 -4.3
7,142 + EX28DRAFT_4443 0.17 -3.4
7,142 + EX28DRAFT_4443 0.17 -2.7
7,142 + EX28DRAFT_4443 0.17 -0.8
7,143 - EX28DRAFT_4443 0.17 -4.8
7,143 - EX28DRAFT_4443 0.17 -3.1
7,143 - EX28DRAFT_4443 0.17 -2.9
7,143 - EX28DRAFT_4443 0.17 -2.6
7,143 - EX28DRAFT_4443 0.17 -2.8
7,235 + EX28DRAFT_4443 0.22 -2.0
7,236 - EX28DRAFT_4443 0.22 -3.9
7,236 - EX28DRAFT_4443 0.22 -2.2
7,563 + EX28DRAFT_4443 0.40 -0.4
7,563 + EX28DRAFT_4443 0.40 -1.4
7,564 - EX28DRAFT_4443 0.40 -3.0
7,564 - EX28DRAFT_4443 0.40 -4.0
7,760 + EX28DRAFT_4443 0.51 -3.8
7,761 - EX28DRAFT_4443 0.51 -4.4
7,761 - EX28DRAFT_4443 0.51 -6.4
7,785 + EX28DRAFT_4443 0.52 -2.4
7,786 - EX28DRAFT_4443 0.52 -4.6
7,791 - EX28DRAFT_4443 0.52 -2.9
7,801 + EX28DRAFT_4443 0.53 -4.0
7,802 - EX28DRAFT_4443 0.53 -6.0
7,802 - EX28DRAFT_4443 0.53 -5.4
8,064 + EX28DRAFT_4443 0.67 -3.9
8,100 + EX28DRAFT_4443 0.69 -2.4
8,188 - EX28DRAFT_4443 0.74 -3.9
8,255 + EX28DRAFT_4443 0.77 -2.0
8,256 - EX28DRAFT_4443 0.77 -4.8
8,328 - EX28DRAFT_4443 0.81 +0.0
8,661 - -4.0
8,753 + -4.4
8,753 + -1.4
8,754 - -2.6
9,299 - EX28DRAFT_4444 0.40 -4.7
9,449 + EX28DRAFT_4444 0.50 -2.0
9,475 + EX28DRAFT_4444 0.52 -1.0
9,485 - EX28DRAFT_4444 0.52 -3.0

Or see this region's nucleotide sequence