Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4440

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4438 and EX28DRAFT_4439 are separated by 65 nucleotidesEX28DRAFT_4439 and EX28DRAFT_4440 are separated by 385 nucleotidesEX28DRAFT_4440 and EX28DRAFT_4441 overlap by 4 nucleotidesEX28DRAFT_4441 and EX28DRAFT_4442 are separated by 18 nucleotides EX28DRAFT_4438: EX28DRAFT_4438 - Mg chelatase-related protein, at 1,811 to 3,331 _4438 EX28DRAFT_4439: EX28DRAFT_4439 - hypothetical protein, at 3,397 to 3,525 _4439 EX28DRAFT_4440: EX28DRAFT_4440 - acetolactate synthase, large subunit (EC 2.2.1.6), at 3,911 to 5,557 _4440 EX28DRAFT_4441: EX28DRAFT_4441 - acetolactate synthase, small subunit (EC 2.2.1.6), at 5,554 to 5,817 _4441 EX28DRAFT_4442: EX28DRAFT_4442 - branched-chain amino acid aminotransferase, group I, at 5,836 to 6,765 _4442 Position (kb) 3 4 5 6Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2.943 kb on - strand, within EX28DRAFT_4438at 3.041 kb on - strand, within EX28DRAFT_4438at 3.084 kb on - strand, within EX28DRAFT_4438at 3.158 kb on - strand, within EX28DRAFT_4438at 3.158 kb on - strand, within EX28DRAFT_4438at 3.159 kb on + strand, within EX28DRAFT_4438at 3.166 kb on + strand, within EX28DRAFT_4438at 3.170 kb on + strand, within EX28DRAFT_4438at 3.170 kb on + strand, within EX28DRAFT_4438at 3.171 kb on - strand, within EX28DRAFT_4438at 3.171 kb on - strand, within EX28DRAFT_4438at 3.171 kb on - strand, within EX28DRAFT_4438at 3.253 kb on + strandat 3.258 kb on - strandat 3.258 kb on - strandat 3.492 kb on + strand, within EX28DRAFT_4439at 3.541 kb on + strandat 3.593 kb on + strandat 3.593 kb on + strandat 3.594 kb on - strandat 3.639 kb on + strandat 3.687 kb on - strandat 3.730 kb on - strandat 3.826 kb on + strandat 3.931 kb on - strandat 3.933 kb on + strandat 3.933 kb on + strandat 3.934 kb on - strandat 3.934 kb on - strandat 3.991 kb on + strandat 4.002 kb on - strandat 4.014 kb on - strandat 4.079 kb on + strand, within EX28DRAFT_4440at 4.080 kb on - strand, within EX28DRAFT_4440at 4.390 kb on + strand, within EX28DRAFT_4440at 4.391 kb on - strand, within EX28DRAFT_4440at 4.640 kb on + strand, within EX28DRAFT_4440at 4.641 kb on - strand, within EX28DRAFT_4440at 4.641 kb on - strand, within EX28DRAFT_4440at 4.641 kb on - strand, within EX28DRAFT_4440at 4.786 kb on + strand, within EX28DRAFT_4440at 4.787 kb on - strand, within EX28DRAFT_4440at 4.787 kb on - strand, within EX28DRAFT_4440at 4.967 kb on + strand, within EX28DRAFT_4440at 4.968 kb on - strand, within EX28DRAFT_4440at 5.002 kb on + strand, within EX28DRAFT_4440at 5.003 kb on - strand, within EX28DRAFT_4440at 5.003 kb on - strand, within EX28DRAFT_4440at 5.035 kb on - strand, within EX28DRAFT_4440at 5.072 kb on + strand, within EX28DRAFT_4440at 5.073 kb on - strand, within EX28DRAFT_4440at 5.183 kb on - strand, within EX28DRAFT_4440at 5.550 kb on + strandat 5.550 kb on + strandat 5.652 kb on + strand, within EX28DRAFT_4441at 5.653 kb on - strand, within EX28DRAFT_4441at 5.700 kb on - strand, within EX28DRAFT_4441at 5.730 kb on - strand, within EX28DRAFT_4441at 5.736 kb on + strand, within EX28DRAFT_4441at 5.757 kb on - strand, within EX28DRAFT_4441at 5.857 kb on + strandat 5.858 kb on - strandat 5.929 kb on + strand, within EX28DRAFT_4442at 5.929 kb on + strand, within EX28DRAFT_4442at 5.930 kb on - strand, within EX28DRAFT_4442at 5.935 kb on - strand, within EX28DRAFT_4442at 5.942 kb on + strand, within EX28DRAFT_4442at 5.943 kb on - strand, within EX28DRAFT_4442at 5.943 kb on - strand, within EX28DRAFT_4442at 5.962 kb on + strand, within EX28DRAFT_4442at 5.963 kb on - strand, within EX28DRAFT_4442at 6.182 kb on - strand, within EX28DRAFT_4442at 6.184 kb on - strand, within EX28DRAFT_4442at 6.329 kb on - strand, within EX28DRAFT_4442at 6.407 kb on - strand, within EX28DRAFT_4442at 6.407 kb on - strand, within EX28DRAFT_4442at 6.407 kb on - strand, within EX28DRAFT_4442at 6.453 kb on + strand, within EX28DRAFT_4442at 6.546 kb on - strand, within EX28DRAFT_4442at 6.546 kb on - strand, within EX28DRAFT_4442

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,943 - EX28DRAFT_4438 0.74 -0.1
3,041 - EX28DRAFT_4438 0.81 -2.0
3,084 - EX28DRAFT_4438 0.84 -0.5
3,158 - EX28DRAFT_4438 0.89 -0.0
3,158 - EX28DRAFT_4438 0.89 -0.4
3,159 + EX28DRAFT_4438 0.89 +0.7
3,166 + EX28DRAFT_4438 0.89 +0.4
3,170 + EX28DRAFT_4438 0.89 +0.3
3,170 + EX28DRAFT_4438 0.89 +0.6
3,171 - EX28DRAFT_4438 0.89 +0.1
3,171 - EX28DRAFT_4438 0.89 +0.4
3,171 - EX28DRAFT_4438 0.89 -1.1
3,253 + -0.6
3,258 - -0.1
3,258 - -0.1
3,492 + EX28DRAFT_4439 0.74 +0.4
3,541 + +0.7
3,593 + -0.9
3,593 + +0.1
3,594 - +0.2
3,639 + +0.3
3,687 - -2.4
3,730 - -1.9
3,826 + +0.6
3,931 - -1.4
3,933 + -0.4
3,933 + -1.0
3,934 - -2.4
3,934 - -1.5
3,991 + -0.2
4,002 - -3.9
4,014 - -4.5
4,079 + EX28DRAFT_4440 0.10 -0.5
4,080 - EX28DRAFT_4440 0.10 -1.7
4,390 + EX28DRAFT_4440 0.29 -1.3
4,391 - EX28DRAFT_4440 0.29 -4.0
4,640 + EX28DRAFT_4440 0.44 -0.5
4,641 - EX28DRAFT_4440 0.44 -3.5
4,641 - EX28DRAFT_4440 0.44 -2.0
4,641 - EX28DRAFT_4440 0.44 -0.8
4,786 + EX28DRAFT_4440 0.53 -0.2
4,787 - EX28DRAFT_4440 0.53 -1.2
4,787 - EX28DRAFT_4440 0.53 -0.7
4,967 + EX28DRAFT_4440 0.64 +1.5
4,968 - EX28DRAFT_4440 0.64 -0.9
5,002 + EX28DRAFT_4440 0.66 -0.4
5,003 - EX28DRAFT_4440 0.66 -3.3
5,003 - EX28DRAFT_4440 0.66 -0.4
5,035 - EX28DRAFT_4440 0.68 -1.9
5,072 + EX28DRAFT_4440 0.70 -1.0
5,073 - EX28DRAFT_4440 0.71 -2.0
5,183 - EX28DRAFT_4440 0.77 -1.4
5,550 + +0.2
5,550 + -0.1
5,652 + EX28DRAFT_4441 0.37 -0.1
5,653 - EX28DRAFT_4441 0.38 -2.4
5,700 - EX28DRAFT_4441 0.55 -0.4
5,730 - EX28DRAFT_4441 0.67 -1.4
5,736 + EX28DRAFT_4441 0.69 -0.3
5,757 - EX28DRAFT_4441 0.77 -2.2
5,857 + -1.0
5,858 - -3.2
5,929 + EX28DRAFT_4442 0.10 -0.2
5,929 + EX28DRAFT_4442 0.10 +0.4
5,930 - EX28DRAFT_4442 0.10 -2.0
5,935 - EX28DRAFT_4442 0.11 -3.9
5,942 + EX28DRAFT_4442 0.11 +1.0
5,943 - EX28DRAFT_4442 0.12 -1.7
5,943 - EX28DRAFT_4442 0.12 -2.4
5,962 + EX28DRAFT_4442 0.14 -0.8
5,963 - EX28DRAFT_4442 0.14 -5.1
6,182 - EX28DRAFT_4442 0.37 -2.9
6,184 - EX28DRAFT_4442 0.37 -4.3
6,329 - EX28DRAFT_4442 0.53 -3.2
6,407 - EX28DRAFT_4442 0.61 -4.4
6,407 - EX28DRAFT_4442 0.61 -5.7
6,407 - EX28DRAFT_4442 0.61 -5.0
6,453 + EX28DRAFT_4442 0.66 -1.6
6,546 - EX28DRAFT_4442 0.76 -2.6
6,546 - EX28DRAFT_4442 0.76 -4.2

Or see this region's nucleotide sequence