Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4438

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4436 and EX28DRAFT_4437 are separated by 118 nucleotidesEX28DRAFT_4437 and EX28DRAFT_4438 are separated by 29 nucleotidesEX28DRAFT_4438 and EX28DRAFT_4439 are separated by 65 nucleotidesEX28DRAFT_4439 and EX28DRAFT_4440 are separated by 385 nucleotides EX28DRAFT_4436: EX28DRAFT_4436 - Transcriptional regulator, at 503 to 1,324 _4436 EX28DRAFT_4437: EX28DRAFT_4437 - Uncharacterized protein conserved in bacteria, at 1,443 to 1,781 _4437 EX28DRAFT_4438: EX28DRAFT_4438 - Mg chelatase-related protein, at 1,811 to 3,331 _4438 EX28DRAFT_4439: EX28DRAFT_4439 - hypothetical protein, at 3,397 to 3,525 _4439 EX28DRAFT_4440: EX28DRAFT_4440 - acetolactate synthase, large subunit (EC 2.2.1.6), at 3,911 to 5,557 _4440 Position (kb) 1 2 3 4Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 0.829 kb on - strand, within EX28DRAFT_4436at 1.060 kb on + strand, within EX28DRAFT_4436at 1.061 kb on - strand, within EX28DRAFT_4436at 1.072 kb on + strand, within EX28DRAFT_4436at 1.087 kb on + strand, within EX28DRAFT_4436at 1.249 kb on - strandat 1.389 kb on + strandat 1.389 kb on + strandat 1.393 kb on + strandat 1.394 kb on - strandat 1.413 kb on - strandat 1.672 kb on + strand, within EX28DRAFT_4437at 1.683 kb on + strand, within EX28DRAFT_4437at 1.683 kb on + strand, within EX28DRAFT_4437at 1.684 kb on - strand, within EX28DRAFT_4437at 1.684 kb on - strand, within EX28DRAFT_4437at 1.761 kb on + strandat 1.813 kb on - strandat 1.958 kb on + strandat 1.958 kb on + strandat 1.959 kb on - strandat 2.061 kb on - strand, within EX28DRAFT_4438at 2.080 kb on - strand, within EX28DRAFT_4438at 2.114 kb on + strand, within EX28DRAFT_4438at 2.114 kb on + strand, within EX28DRAFT_4438at 2.225 kb on - strand, within EX28DRAFT_4438at 2.263 kb on + strand, within EX28DRAFT_4438at 2.331 kb on + strand, within EX28DRAFT_4438at 2.337 kb on - strand, within EX28DRAFT_4438at 2.359 kb on + strand, within EX28DRAFT_4438at 2.359 kb on + strand, within EX28DRAFT_4438at 2.359 kb on + strand, within EX28DRAFT_4438at 2.359 kb on + strand, within EX28DRAFT_4438at 2.359 kb on + strand, within EX28DRAFT_4438at 2.360 kb on - strand, within EX28DRAFT_4438at 2.360 kb on - strand, within EX28DRAFT_4438at 2.360 kb on - strand, within EX28DRAFT_4438at 2.363 kb on + strand, within EX28DRAFT_4438at 2.364 kb on - strand, within EX28DRAFT_4438at 2.364 kb on - strand, within EX28DRAFT_4438at 2.364 kb on - strand, within EX28DRAFT_4438at 2.584 kb on + strand, within EX28DRAFT_4438at 2.584 kb on + strand, within EX28DRAFT_4438at 2.584 kb on + strand, within EX28DRAFT_4438at 2.586 kb on + strand, within EX28DRAFT_4438at 2.586 kb on + strand, within EX28DRAFT_4438at 2.586 kb on + strand, within EX28DRAFT_4438at 2.586 kb on + strand, within EX28DRAFT_4438at 2.586 kb on + strand, within EX28DRAFT_4438at 2.587 kb on - strand, within EX28DRAFT_4438at 2.587 kb on - strand, within EX28DRAFT_4438at 2.587 kb on - strand, within EX28DRAFT_4438at 2.588 kb on + strand, within EX28DRAFT_4438at 2.589 kb on - strand, within EX28DRAFT_4438at 2.642 kb on + strand, within EX28DRAFT_4438at 2.642 kb on + strand, within EX28DRAFT_4438at 2.687 kb on + strand, within EX28DRAFT_4438at 2.688 kb on - strand, within EX28DRAFT_4438at 2.785 kb on + strand, within EX28DRAFT_4438at 2.785 kb on + strand, within EX28DRAFT_4438at 2.785 kb on + strand, within EX28DRAFT_4438at 2.785 kb on + strand, within EX28DRAFT_4438at 2.786 kb on - strand, within EX28DRAFT_4438at 2.786 kb on - strand, within EX28DRAFT_4438at 2.853 kb on - strand, within EX28DRAFT_4438at 2.943 kb on - strand, within EX28DRAFT_4438at 3.041 kb on - strand, within EX28DRAFT_4438at 3.084 kb on - strand, within EX28DRAFT_4438at 3.158 kb on - strand, within EX28DRAFT_4438at 3.158 kb on - strand, within EX28DRAFT_4438at 3.159 kb on + strand, within EX28DRAFT_4438at 3.166 kb on + strand, within EX28DRAFT_4438at 3.170 kb on + strand, within EX28DRAFT_4438at 3.170 kb on + strand, within EX28DRAFT_4438at 3.171 kb on - strand, within EX28DRAFT_4438at 3.171 kb on - strand, within EX28DRAFT_4438at 3.171 kb on - strand, within EX28DRAFT_4438at 3.253 kb on + strandat 3.258 kb on - strandat 3.258 kb on - strandat 3.492 kb on + strand, within EX28DRAFT_4439at 3.541 kb on + strandat 3.593 kb on + strandat 3.593 kb on + strandat 3.594 kb on - strandat 3.639 kb on + strandat 3.687 kb on - strandat 3.730 kb on - strandat 3.826 kb on + strandat 3.931 kb on - strandat 3.933 kb on + strandat 3.933 kb on + strandat 3.934 kb on - strandat 3.934 kb on - strandat 3.991 kb on + strandat 4.002 kb on - strandat 4.014 kb on - strandat 4.079 kb on + strand, within EX28DRAFT_4440at 4.080 kb on - strand, within EX28DRAFT_4440

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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829 - EX28DRAFT_4436 0.40 +0.1
1,060 + EX28DRAFT_4436 0.68 +0.0
1,061 - EX28DRAFT_4436 0.68 -1.3
1,072 + EX28DRAFT_4436 0.69 +0.8
1,087 + EX28DRAFT_4436 0.71 -0.0
1,249 - -0.1
1,389 + +0.1
1,389 + -0.4
1,393 + +0.6
1,394 - -1.1
1,413 - -0.2
1,672 + EX28DRAFT_4437 0.68 -0.4
1,683 + EX28DRAFT_4437 0.71 +0.8
1,683 + EX28DRAFT_4437 0.71 -0.9
1,684 - EX28DRAFT_4437 0.71 -1.2
1,684 - EX28DRAFT_4437 0.71 -0.0
1,761 + +0.3
1,813 - +0.6
1,958 + -0.2
1,958 + +0.5
1,959 - +1.0
2,061 - EX28DRAFT_4438 0.16 -0.3
2,080 - EX28DRAFT_4438 0.18 +0.6
2,114 + EX28DRAFT_4438 0.20 +2.9
2,114 + EX28DRAFT_4438 0.20 +0.6
2,225 - EX28DRAFT_4438 0.27 +0.2
2,263 + EX28DRAFT_4438 0.30 +0.6
2,331 + EX28DRAFT_4438 0.34 -0.1
2,337 - EX28DRAFT_4438 0.35 +0.8
2,359 + EX28DRAFT_4438 0.36 -0.0
2,359 + EX28DRAFT_4438 0.36 +2.0
2,359 + EX28DRAFT_4438 0.36 +0.2
2,359 + EX28DRAFT_4438 0.36 -0.3
2,359 + EX28DRAFT_4438 0.36 +0.8
2,360 - EX28DRAFT_4438 0.36 +0.1
2,360 - EX28DRAFT_4438 0.36 +0.2
2,360 - EX28DRAFT_4438 0.36 +1.0
2,363 + EX28DRAFT_4438 0.36 +1.3
2,364 - EX28DRAFT_4438 0.36 +1.1
2,364 - EX28DRAFT_4438 0.36 +0.4
2,364 - EX28DRAFT_4438 0.36 -0.3
2,584 + EX28DRAFT_4438 0.51 +0.2
2,584 + EX28DRAFT_4438 0.51 +0.8
2,584 + EX28DRAFT_4438 0.51 +1.2
2,586 + EX28DRAFT_4438 0.51 +0.4
2,586 + EX28DRAFT_4438 0.51 +0.2
2,586 + EX28DRAFT_4438 0.51 +0.7
2,586 + EX28DRAFT_4438 0.51 -2.1
2,586 + EX28DRAFT_4438 0.51 +0.4
2,587 - EX28DRAFT_4438 0.51 -0.3
2,587 - EX28DRAFT_4438 0.51 -0.5
2,587 - EX28DRAFT_4438 0.51 -0.4
2,588 + EX28DRAFT_4438 0.51 +0.1
2,589 - EX28DRAFT_4438 0.51 +1.3
2,642 + EX28DRAFT_4438 0.55 -0.3
2,642 + EX28DRAFT_4438 0.55 +0.6
2,687 + EX28DRAFT_4438 0.58 +0.5
2,688 - EX28DRAFT_4438 0.58 -0.5
2,785 + EX28DRAFT_4438 0.64 -0.4
2,785 + EX28DRAFT_4438 0.64 +0.2
2,785 + EX28DRAFT_4438 0.64 -0.3
2,785 + EX28DRAFT_4438 0.64 +0.0
2,786 - EX28DRAFT_4438 0.64 +1.0
2,786 - EX28DRAFT_4438 0.64 +0.1
2,853 - EX28DRAFT_4438 0.69 +0.6
2,943 - EX28DRAFT_4438 0.74 -0.1
3,041 - EX28DRAFT_4438 0.81 -2.0
3,084 - EX28DRAFT_4438 0.84 -0.5
3,158 - EX28DRAFT_4438 0.89 -0.0
3,158 - EX28DRAFT_4438 0.89 -0.4
3,159 + EX28DRAFT_4438 0.89 +0.7
3,166 + EX28DRAFT_4438 0.89 +0.4
3,170 + EX28DRAFT_4438 0.89 +0.3
3,170 + EX28DRAFT_4438 0.89 +0.6
3,171 - EX28DRAFT_4438 0.89 +0.1
3,171 - EX28DRAFT_4438 0.89 +0.4
3,171 - EX28DRAFT_4438 0.89 -1.1
3,253 + -0.6
3,258 - -0.1
3,258 - -0.1
3,492 + EX28DRAFT_4439 0.74 +0.4
3,541 + +0.7
3,593 + -0.9
3,593 + +0.1
3,594 - +0.2
3,639 + +0.3
3,687 - -2.4
3,730 - -1.9
3,826 + +0.6
3,931 - -1.4
3,933 + -0.4
3,933 + -1.0
3,934 - -2.4
3,934 - -1.5
3,991 + -0.2
4,002 - -3.9
4,014 - -4.5
4,079 + EX28DRAFT_4440 0.10 -0.5
4,080 - EX28DRAFT_4440 0.10 -1.7

Or see this region's nucleotide sequence