Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4418

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4416 and EX28DRAFT_4417 are separated by 128 nucleotidesEX28DRAFT_4417 and EX28DRAFT_4418 are separated by 93 nucleotidesEX28DRAFT_4418 and EX28DRAFT_4419 are separated by 271 nucleotides EX28DRAFT_4416: EX28DRAFT_4416 - fructose-6-phosphate aldolase, TalC/MipB family, at 81,897 to 82,559 _4416 EX28DRAFT_4417: EX28DRAFT_4417 - Helix-turn-helix domain, at 82,688 to 83,452 _4417 EX28DRAFT_4418: EX28DRAFT_4418 - Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31), at 83,546 to 86,197 _4418 EX28DRAFT_4419: EX28DRAFT_4419 - acetylornithine deacetylase (ArgE), at 86,469 to 87,620 _4419 Position (kb) 83 84 85 86 87Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 82.571 kb on - strandat 82.589 kb on - strandat 82.595 kb on + strandat 82.596 kb on - strandat 82.728 kb on + strandat 82.776 kb on + strand, within EX28DRAFT_4417at 82.776 kb on + strand, within EX28DRAFT_4417at 82.777 kb on - strand, within EX28DRAFT_4417at 82.777 kb on - strand, within EX28DRAFT_4417at 82.789 kb on + strand, within EX28DRAFT_4417at 82.823 kb on - strand, within EX28DRAFT_4417at 82.823 kb on - strand, within EX28DRAFT_4417at 82.831 kb on - strand, within EX28DRAFT_4417at 82.878 kb on + strand, within EX28DRAFT_4417at 82.927 kb on - strand, within EX28DRAFT_4417at 82.941 kb on + strand, within EX28DRAFT_4417at 83.091 kb on - strand, within EX28DRAFT_4417at 83.132 kb on + strand, within EX28DRAFT_4417at 83.132 kb on + strand, within EX28DRAFT_4417at 83.133 kb on - strand, within EX28DRAFT_4417at 83.133 kb on - strand, within EX28DRAFT_4417at 83.209 kb on + strand, within EX28DRAFT_4417at 83.210 kb on - strand, within EX28DRAFT_4417at 83.210 kb on - strand, within EX28DRAFT_4417at 83.222 kb on + strand, within EX28DRAFT_4417at 83.255 kb on + strand, within EX28DRAFT_4417at 83.255 kb on + strand, within EX28DRAFT_4417at 83.255 kb on + strand, within EX28DRAFT_4417at 83.255 kb on + strand, within EX28DRAFT_4417at 83.256 kb on - strand, within EX28DRAFT_4417at 83.256 kb on - strand, within EX28DRAFT_4417at 83.256 kb on - strand, within EX28DRAFT_4417at 83.256 kb on - strand, within EX28DRAFT_4417at 83.307 kb on - strand, within EX28DRAFT_4417at 83.361 kb on + strand, within EX28DRAFT_4417at 83.362 kb on - strand, within EX28DRAFT_4417at 83.441 kb on - strandat 83.508 kb on + strandat 83.509 kb on - strandat 83.509 kb on - strandat 83.544 kb on + strandat 83.544 kb on + strandat 83.545 kb on - strandat 83.558 kb on - strandat 83.626 kb on + strandat 83.626 kb on + strandat 83.695 kb on - strandat 83.853 kb on + strand, within EX28DRAFT_4418at 84.072 kb on - strand, within EX28DRAFT_4418at 84.211 kb on + strand, within EX28DRAFT_4418at 84.336 kb on + strand, within EX28DRAFT_4418at 84.607 kb on + strand, within EX28DRAFT_4418at 84.784 kb on - strand, within EX28DRAFT_4418at 85.014 kb on - strand, within EX28DRAFT_4418at 85.014 kb on - strand, within EX28DRAFT_4418at 85.118 kb on - strand, within EX28DRAFT_4418at 85.118 kb on - strand, within EX28DRAFT_4418at 85.540 kb on - strand, within EX28DRAFT_4418at 85.543 kb on + strand, within EX28DRAFT_4418at 85.544 kb on - strand, within EX28DRAFT_4418at 85.544 kb on - strand, within EX28DRAFT_4418at 86.167 kb on + strandat 86.170 kb on + strandat 86.198 kb on - strandat 86.276 kb on - strandat 86.285 kb on + strandat 86.332 kb on - strandat 86.332 kb on - strandat 86.374 kb on + strandat 86.471 kb on - strandat 86.632 kb on + strand, within EX28DRAFT_4419at 86.633 kb on - strand, within EX28DRAFT_4419at 87.163 kb on + strand, within EX28DRAFT_4419

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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82,571 - +0.3
82,589 - -2.0
82,595 + +0.2
82,596 - +0.2
82,728 + +0.1
82,776 + EX28DRAFT_4417 0.12 -0.6
82,776 + EX28DRAFT_4417 0.12 +0.7
82,777 - EX28DRAFT_4417 0.12 +0.6
82,777 - EX28DRAFT_4417 0.12 -0.7
82,789 + EX28DRAFT_4417 0.13 -2.9
82,823 - EX28DRAFT_4417 0.18 +0.5
82,823 - EX28DRAFT_4417 0.18 -0.1
82,831 - EX28DRAFT_4417 0.19 +0.8
82,878 + EX28DRAFT_4417 0.25 +0.2
82,927 - EX28DRAFT_4417 0.31 +0.9
82,941 + EX28DRAFT_4417 0.33 -0.4
83,091 - EX28DRAFT_4417 0.53 -0.1
83,132 + EX28DRAFT_4417 0.58 -0.8
83,132 + EX28DRAFT_4417 0.58 -0.3
83,133 - EX28DRAFT_4417 0.58 +0.2
83,133 - EX28DRAFT_4417 0.58 +0.8
83,209 + EX28DRAFT_4417 0.68 +1.2
83,210 - EX28DRAFT_4417 0.68 -0.3
83,210 - EX28DRAFT_4417 0.68 +0.4
83,222 + EX28DRAFT_4417 0.70 -0.2
83,255 + EX28DRAFT_4417 0.74 -2.1
83,255 + EX28DRAFT_4417 0.74 +0.2
83,255 + EX28DRAFT_4417 0.74 -0.1
83,255 + EX28DRAFT_4417 0.74 -0.1
83,256 - EX28DRAFT_4417 0.74 -0.6
83,256 - EX28DRAFT_4417 0.74 -0.4
83,256 - EX28DRAFT_4417 0.74 +0.9
83,256 - EX28DRAFT_4417 0.74 -0.0
83,307 - EX28DRAFT_4417 0.81 -0.5
83,361 + EX28DRAFT_4417 0.88 +0.5
83,362 - EX28DRAFT_4417 0.88 +0.5
83,441 - -0.3
83,508 + +0.7
83,509 - +1.0
83,509 - +0.2
83,544 + -0.2
83,544 + -1.0
83,545 - -1.0
83,558 - -3.5
83,626 + -3.5
83,626 + -2.7
83,695 - -4.1
83,853 + EX28DRAFT_4418 0.12 -2.4
84,072 - EX28DRAFT_4418 0.20 -2.6
84,211 + EX28DRAFT_4418 0.25 -3.1
84,336 + EX28DRAFT_4418 0.30 +0.4
84,607 + EX28DRAFT_4418 0.40 -4.3
84,784 - EX28DRAFT_4418 0.47 -2.6
85,014 - EX28DRAFT_4418 0.55 -4.5
85,014 - EX28DRAFT_4418 0.55 -3.5
85,118 - EX28DRAFT_4418 0.59 -2.6
85,118 - EX28DRAFT_4418 0.59 -4.1
85,540 - EX28DRAFT_4418 0.75 -2.6
85,543 + EX28DRAFT_4418 0.75 -2.1
85,544 - EX28DRAFT_4418 0.75 -4.2
85,544 - EX28DRAFT_4418 0.75 -3.4
86,167 + -1.8
86,170 + -3.4
86,198 - -4.5
86,276 - -1.5
86,285 + -2.4
86,332 - -0.1
86,332 - -0.7
86,374 + -3.6
86,471 - +0.6
86,632 + EX28DRAFT_4419 0.14 -0.8
86,633 - EX28DRAFT_4419 0.14 -3.6
87,163 + EX28DRAFT_4419 0.60 -2.9

Or see this region's nucleotide sequence