Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4209

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4207 and EX28DRAFT_4208 overlap by 4 nucleotidesEX28DRAFT_4208 and EX28DRAFT_4209 are separated by 9 nucleotidesEX28DRAFT_4209 and EX28DRAFT_4210 overlap by 4 nucleotides EX28DRAFT_4207: EX28DRAFT_4207 - Uncharacterized enzyme of phosphonate metabolism, at 14,713 to 15,558 _4207 EX28DRAFT_4208: EX28DRAFT_4208 - phosphonate C-P lyase system protein PhnK, at 15,555 to 16,310 _4208 EX28DRAFT_4209: EX28DRAFT_4209 - phosphonate C-P lyase system protein PhnL, at 16,320 to 17,000 _4209 EX28DRAFT_4210: EX28DRAFT_4210 - phosphonate metabolism protein PhnM, at 16,997 to 18,133 _4210 Position (kb) 16 17 18Strain fitness (log2 ratio) -1 0 1at 15.353 kb on - strand, within EX28DRAFT_4207at 15.367 kb on + strand, within EX28DRAFT_4207at 15.460 kb on + strand, within EX28DRAFT_4207at 15.460 kb on + strand, within EX28DRAFT_4207at 15.578 kb on + strandat 15.578 kb on + strandat 15.742 kb on - strand, within EX28DRAFT_4208at 16.055 kb on + strand, within EX28DRAFT_4208at 16.309 kb on - strandat 16.309 kb on - strandat 16.331 kb on - strandat 16.331 kb on - strandat 16.339 kb on + strandat 16.340 kb on - strandat 16.340 kb on - strandat 16.343 kb on + strandat 16.344 kb on - strandat 16.344 kb on - strandat 16.394 kb on + strand, within EX28DRAFT_4209at 16.395 kb on - strand, within EX28DRAFT_4209at 16.491 kb on + strand, within EX28DRAFT_4209at 16.492 kb on - strand, within EX28DRAFT_4209at 16.492 kb on - strand, within EX28DRAFT_4209at 16.565 kb on + strand, within EX28DRAFT_4209at 16.565 kb on + strand, within EX28DRAFT_4209at 16.565 kb on + strand, within EX28DRAFT_4209at 16.565 kb on + strand, within EX28DRAFT_4209at 16.566 kb on - strand, within EX28DRAFT_4209at 16.831 kb on + strand, within EX28DRAFT_4209at 16.951 kb on + strandat 17.101 kb on + strandat 17.529 kb on - strand, within EX28DRAFT_4210at 17.529 kb on - strand, within EX28DRAFT_4210at 17.538 kb on - strand, within EX28DRAFT_4210at 17.552 kb on + strand, within EX28DRAFT_4210at 17.627 kb on - strand, within EX28DRAFT_4210at 17.706 kb on + strand, within EX28DRAFT_4210at 17.962 kb on + strand, within EX28DRAFT_4210at 17.962 kb on + strand, within EX28DRAFT_4210

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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15,353 - EX28DRAFT_4207 0.76 -0.4
15,367 + EX28DRAFT_4207 0.77 +0.3
15,460 + EX28DRAFT_4207 0.88 -0.7
15,460 + EX28DRAFT_4207 0.88 +0.3
15,578 + +0.3
15,578 + -1.7
15,742 - EX28DRAFT_4208 0.25 +0.1
16,055 + EX28DRAFT_4208 0.66 -0.3
16,309 - -0.1
16,309 - +0.1
16,331 - +0.3
16,331 - +0.3
16,339 + +0.3
16,340 - -1.0
16,340 - -0.1
16,343 + -0.3
16,344 - -0.2
16,344 - -0.1
16,394 + EX28DRAFT_4209 0.11 -0.3
16,395 - EX28DRAFT_4209 0.11 +0.1
16,491 + EX28DRAFT_4209 0.25 +0.6
16,492 - EX28DRAFT_4209 0.25 +0.2
16,492 - EX28DRAFT_4209 0.25 +0.5
16,565 + EX28DRAFT_4209 0.36 +0.3
16,565 + EX28DRAFT_4209 0.36 +0.7
16,565 + EX28DRAFT_4209 0.36 +0.5
16,565 + EX28DRAFT_4209 0.36 +0.3
16,566 - EX28DRAFT_4209 0.36 +1.2
16,831 + EX28DRAFT_4209 0.75 +0.1
16,951 + +0.3
17,101 + +0.3
17,529 - EX28DRAFT_4210 0.47 +0.2
17,529 - EX28DRAFT_4210 0.47 +0.3
17,538 - EX28DRAFT_4210 0.48 +0.3
17,552 + EX28DRAFT_4210 0.49 -1.5
17,627 - EX28DRAFT_4210 0.55 -0.3
17,706 + EX28DRAFT_4210 0.62 +0.5
17,962 + EX28DRAFT_4210 0.85 +0.4
17,962 + EX28DRAFT_4210 0.85 +0.1

Or see this region's nucleotide sequence