Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4199

Experiment: M9 with sucrose; no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_4198 and EX28DRAFT_4199 are separated by 80 nucleotidesEX28DRAFT_4199 and EX28DRAFT_4200 are separated by 136 nucleotidesEX28DRAFT_4200 and EX28DRAFT_4201 are separated by 24 nucleotides EX28DRAFT_4198: EX28DRAFT_4198 - alkylphosphonate utilization operon protein PhnA, at 8,227 to 8,562 _4198 EX28DRAFT_4199: EX28DRAFT_4199 - Uncharacterized protein conserved in bacteria, at 8,643 to 9,080 _4199 EX28DRAFT_4200: EX28DRAFT_4200 - phosphonate ABC transporter, ATP-binding protein, at 9,217 to 10,005 _4200 EX28DRAFT_4201: EX28DRAFT_4201 - phosphonate ABC transporter, periplasmic phosphonate binding protein, at 10,030 to 11,046 _4201 Position (kb) 8 9 10Strain fitness (log2 ratio) -1 0 1 2at 7.669 kb on - strandat 7.685 kb on + strandat 7.689 kb on + strandat 7.689 kb on + strandat 7.689 kb on + strandat 7.690 kb on - strandat 7.690 kb on - strandat 7.705 kb on - strandat 7.793 kb on - strandat 7.793 kb on - strandat 7.793 kb on - strandat 7.793 kb on - strandat 7.843 kb on - strandat 7.859 kb on + strandat 7.869 kb on - strandat 7.872 kb on + strandat 7.893 kb on - strandat 7.896 kb on - strandat 7.896 kb on - strandat 7.913 kb on + strandat 7.942 kb on + strandat 7.942 kb on + strandat 7.942 kb on + strandat 7.943 kb on - strandat 7.943 kb on - strandat 8.049 kb on - strandat 8.049 kb on - strandat 8.049 kb on - strandat 8.059 kb on + strandat 8.060 kb on - strandat 8.148 kb on + strandat 8.149 kb on - strandat 8.149 kb on - strandat 8.182 kb on + strandat 8.182 kb on + strandat 8.182 kb on + strandat 8.183 kb on - strandat 8.183 kb on - strandat 8.226 kb on + strandat 8.269 kb on + strand, within EX28DRAFT_4198at 8.269 kb on + strand, within EX28DRAFT_4198at 8.270 kb on - strand, within EX28DRAFT_4198at 8.270 kb on - strand, within EX28DRAFT_4198at 8.270 kb on - strand, within EX28DRAFT_4198at 8.270 kb on - strand, within EX28DRAFT_4198at 8.270 kb on - strand, within EX28DRAFT_4198at 8.277 kb on + strand, within EX28DRAFT_4198at 8.405 kb on + strand, within EX28DRAFT_4198at 8.405 kb on + strand, within EX28DRAFT_4198at 8.406 kb on - strand, within EX28DRAFT_4198at 8.494 kb on - strand, within EX28DRAFT_4198at 8.565 kb on + strandat 8.607 kb on - strandat 8.607 kb on - strandat 8.612 kb on + strandat 8.642 kb on + strandat 8.650 kb on + strandat 8.659 kb on - strandat 8.730 kb on + strand, within EX28DRAFT_4199at 8.730 kb on + strand, within EX28DRAFT_4199at 8.731 kb on - strand, within EX28DRAFT_4199at 8.732 kb on + strand, within EX28DRAFT_4199at 8.732 kb on + strand, within EX28DRAFT_4199at 9.032 kb on + strand, within EX28DRAFT_4199at 9.036 kb on + strand, within EX28DRAFT_4199at 9.036 kb on + strand, within EX28DRAFT_4199at 9.037 kb on - strandat 9.057 kb on - strandat 9.199 kb on + strandat 9.200 kb on - strandat 9.268 kb on - strandat 9.365 kb on + strand, within EX28DRAFT_4200at 9.365 kb on + strand, within EX28DRAFT_4200at 9.365 kb on + strand, within EX28DRAFT_4200at 9.376 kb on - strand, within EX28DRAFT_4200at 9.484 kb on + strand, within EX28DRAFT_4200at 9.618 kb on - strand, within EX28DRAFT_4200at 9.860 kb on - strand, within EX28DRAFT_4200at 9.962 kb on - strandat 10.003 kb on + strandat 10.003 kb on + strandat 10.004 kb on - strandat 10.004 kb on - strandat 10.027 kb on + strandat 10.027 kb on + strandat 10.028 kb on - strandat 10.036 kb on + strandat 10.036 kb on + strandat 10.063 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
remove
7,669 - +0.3
7,685 + -0.2
7,689 + +0.7
7,689 + -0.7
7,689 + +2.1
7,690 - -0.4
7,690 - -0.3
7,705 - -0.9
7,793 - -0.1
7,793 - +1.8
7,793 - +0.2
7,793 - -0.9
7,843 - -0.0
7,859 + +0.4
7,869 - -0.1
7,872 + +0.0
7,893 - +1.3
7,896 - +0.4
7,896 - +0.3
7,913 + +0.5
7,942 + -0.7
7,942 + +0.8
7,942 + +0.1
7,943 - -0.0
7,943 - +0.2
8,049 - -0.8
8,049 - -0.3
8,049 - +0.1
8,059 + +0.3
8,060 - -0.2
8,148 + +0.4
8,149 - -0.4
8,149 - +0.3
8,182 + +0.2
8,182 + -0.5
8,182 + +0.5
8,183 - -0.2
8,183 - +0.5
8,226 + +0.1
8,269 + EX28DRAFT_4198 0.12 -1.4
8,269 + EX28DRAFT_4198 0.12 +0.9
8,270 - EX28DRAFT_4198 0.13 +0.4
8,270 - EX28DRAFT_4198 0.13 -0.5
8,270 - EX28DRAFT_4198 0.13 -0.3
8,270 - EX28DRAFT_4198 0.13 -0.2
8,270 - EX28DRAFT_4198 0.13 -0.4
8,277 + EX28DRAFT_4198 0.15 -0.6
8,405 + EX28DRAFT_4198 0.53 +1.1
8,405 + EX28DRAFT_4198 0.53 -0.2
8,406 - EX28DRAFT_4198 0.53 -1.0
8,494 - EX28DRAFT_4198 0.79 +0.9
8,565 + +0.1
8,607 - -0.5
8,607 - -0.8
8,612 + +0.3
8,642 + +0.9
8,650 + -0.5
8,659 - +0.3
8,730 + EX28DRAFT_4199 0.20 -0.3
8,730 + EX28DRAFT_4199 0.20 +0.2
8,731 - EX28DRAFT_4199 0.20 -0.4
8,732 + EX28DRAFT_4199 0.20 -0.7
8,732 + EX28DRAFT_4199 0.20 -1.5
9,032 + EX28DRAFT_4199 0.89 +0.2
9,036 + EX28DRAFT_4199 0.90 +1.3
9,036 + EX28DRAFT_4199 0.90 -1.1
9,037 - -0.3
9,057 - -0.4
9,199 + -0.2
9,200 - -0.7
9,268 - -0.2
9,365 + EX28DRAFT_4200 0.19 +0.5
9,365 + EX28DRAFT_4200 0.19 +0.5
9,365 + EX28DRAFT_4200 0.19 -0.1
9,376 - EX28DRAFT_4200 0.20 +0.1
9,484 + EX28DRAFT_4200 0.34 +0.5
9,618 - EX28DRAFT_4200 0.51 -0.7
9,860 - EX28DRAFT_4200 0.81 -1.1
9,962 - -0.2
10,003 + +0.6
10,003 + -0.7
10,004 - +0.0
10,004 - -0.3
10,027 + -0.4
10,027 + +0.2
10,028 - -0.4
10,036 + +0.1
10,036 + -0.4
10,063 - +0.2

Or see this region's nucleotide sequence