Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4194

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4193 and EX28DRAFT_4194 are separated by 33 nucleotidesEX28DRAFT_4194 and EX28DRAFT_4195 are separated by 648 nucleotides EX28DRAFT_4193: EX28DRAFT_4193 - ABC-type uncharacterized transport system, permease component, at 148 to 1,176 _4193 EX28DRAFT_4194: EX28DRAFT_4194 - metabolite-proton symporter, at 1,210 to 2,712 _4194 EX28DRAFT_4195: EX28DRAFT_4195 - 2-keto-3-deoxygluconate transporter, at 3,361 to 4,353 _4195 Position (kb) 1 2 3Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 0.303 kb on + strand, within EX28DRAFT_4193at 0.382 kb on + strand, within EX28DRAFT_4193at 0.382 kb on + strand, within EX28DRAFT_4193at 0.396 kb on + strand, within EX28DRAFT_4193at 0.396 kb on + strand, within EX28DRAFT_4193at 0.397 kb on - strand, within EX28DRAFT_4193at 0.397 kb on - strand, within EX28DRAFT_4193at 0.422 kb on + strand, within EX28DRAFT_4193at 0.449 kb on - strand, within EX28DRAFT_4193at 0.449 kb on - strand, within EX28DRAFT_4193at 0.502 kb on + strand, within EX28DRAFT_4193at 0.503 kb on - strand, within EX28DRAFT_4193at 0.609 kb on - strand, within EX28DRAFT_4193at 0.636 kb on + strand, within EX28DRAFT_4193at 0.636 kb on + strand, within EX28DRAFT_4193at 0.637 kb on - strand, within EX28DRAFT_4193at 0.637 kb on - strand, within EX28DRAFT_4193at 0.637 kb on - strand, within EX28DRAFT_4193at 0.637 kb on - strand, within EX28DRAFT_4193at 0.639 kb on + strand, within EX28DRAFT_4193at 0.653 kb on - strand, within EX28DRAFT_4193at 0.665 kb on + strand, within EX28DRAFT_4193at 0.665 kb on + strand, within EX28DRAFT_4193at 0.666 kb on - strand, within EX28DRAFT_4193at 0.678 kb on + strand, within EX28DRAFT_4193at 0.706 kb on + strand, within EX28DRAFT_4193at 0.744 kb on + strand, within EX28DRAFT_4193at 0.744 kb on + strand, within EX28DRAFT_4193at 0.745 kb on - strand, within EX28DRAFT_4193at 0.745 kb on - strand, within EX28DRAFT_4193at 0.807 kb on - strand, within EX28DRAFT_4193at 0.810 kb on + strand, within EX28DRAFT_4193at 0.978 kb on + strand, within EX28DRAFT_4193at 1.053 kb on - strand, within EX28DRAFT_4193at 1.053 kb on - strand, within EX28DRAFT_4193at 1.174 kb on + strandat 1.175 kb on - strandat 1.177 kb on + strandat 1.177 kb on + strandat 1.208 kb on + strandat 1.209 kb on - strandat 1.303 kb on + strandat 1.303 kb on + strandat 1.304 kb on - strandat 1.445 kb on + strand, within EX28DRAFT_4194at 1.563 kb on + strand, within EX28DRAFT_4194at 1.563 kb on + strand, within EX28DRAFT_4194at 1.564 kb on - strand, within EX28DRAFT_4194at 1.617 kb on + strand, within EX28DRAFT_4194at 1.617 kb on + strand, within EX28DRAFT_4194at 1.617 kb on + strand, within EX28DRAFT_4194at 1.618 kb on - strand, within EX28DRAFT_4194at 1.674 kb on + strand, within EX28DRAFT_4194at 1.728 kb on + strand, within EX28DRAFT_4194at 1.728 kb on + strand, within EX28DRAFT_4194at 1.791 kb on + strand, within EX28DRAFT_4194at 1.792 kb on - strand, within EX28DRAFT_4194at 1.839 kb on - strand, within EX28DRAFT_4194at 1.859 kb on + strand, within EX28DRAFT_4194at 1.871 kb on + strand, within EX28DRAFT_4194at 1.871 kb on + strand, within EX28DRAFT_4194at 1.871 kb on + strand, within EX28DRAFT_4194at 1.872 kb on - strand, within EX28DRAFT_4194at 1.872 kb on - strand, within EX28DRAFT_4194at 1.886 kb on + strand, within EX28DRAFT_4194at 1.886 kb on + strand, within EX28DRAFT_4194at 1.886 kb on + strand, within EX28DRAFT_4194at 1.886 kb on + strand, within EX28DRAFT_4194at 1.886 kb on + strand, within EX28DRAFT_4194at 1.887 kb on - strand, within EX28DRAFT_4194at 1.887 kb on - strand, within EX28DRAFT_4194at 1.887 kb on - strand, within EX28DRAFT_4194at 1.887 kb on - strand, within EX28DRAFT_4194at 1.887 kb on - strand, within EX28DRAFT_4194at 1.887 kb on - strand, within EX28DRAFT_4194at 1.887 kb on - strand, within EX28DRAFT_4194at 1.890 kb on - strand, within EX28DRAFT_4194at 1.890 kb on - strand, within EX28DRAFT_4194at 1.921 kb on - strand, within EX28DRAFT_4194at 2.067 kb on - strand, within EX28DRAFT_4194at 2.133 kb on + strand, within EX28DRAFT_4194at 2.134 kb on - strand, within EX28DRAFT_4194at 2.167 kb on + strand, within EX28DRAFT_4194at 2.167 kb on + strand, within EX28DRAFT_4194at 2.236 kb on - strand, within EX28DRAFT_4194at 2.277 kb on + strand, within EX28DRAFT_4194at 2.279 kb on + strand, within EX28DRAFT_4194at 2.280 kb on - strand, within EX28DRAFT_4194at 2.280 kb on - strand, within EX28DRAFT_4194at 2.313 kb on + strand, within EX28DRAFT_4194at 2.314 kb on - strand, within EX28DRAFT_4194at 2.358 kb on - strand, within EX28DRAFT_4194at 2.365 kb on + strand, within EX28DRAFT_4194at 2.366 kb on - strand, within EX28DRAFT_4194at 2.367 kb on + strand, within EX28DRAFT_4194at 2.367 kb on + strand, within EX28DRAFT_4194at 2.385 kb on + strand, within EX28DRAFT_4194at 2.386 kb on - strand, within EX28DRAFT_4194at 2.397 kb on + strand, within EX28DRAFT_4194at 2.435 kb on + strand, within EX28DRAFT_4194at 2.435 kb on + strand, within EX28DRAFT_4194at 2.435 kb on + strand, within EX28DRAFT_4194at 2.435 kb on + strand, within EX28DRAFT_4194at 2.436 kb on - strand, within EX28DRAFT_4194at 2.436 kb on - strand, within EX28DRAFT_4194at 2.503 kb on - strand, within EX28DRAFT_4194at 2.560 kb on + strand, within EX28DRAFT_4194at 2.568 kb on - strandat 2.582 kb on + strandat 2.640 kb on + strandat 2.641 kb on - strandat 2.662 kb on - strandat 2.707 kb on + strandat 2.708 kb on - strandat 2.708 kb on - strandat 2.708 kb on - strandat 2.712 kb on + strandat 2.712 kb on + strandat 2.712 kb on + strandat 2.712 kb on + strandat 2.712 kb on + strandat 2.712 kb on + strandat 2.713 kb on - strandat 2.713 kb on - strandat 2.713 kb on - strandat 2.716 kb on + strandat 2.717 kb on - strandat 2.717 kb on - strandat 2.819 kb on - strandat 2.819 kb on - strandat 2.822 kb on + strandat 2.822 kb on + strandat 2.822 kb on + strandat 2.823 kb on - strandat 2.835 kb on + strandat 3.056 kb on - strandat 3.076 kb on - strandat 3.247 kb on - strandat 3.302 kb on + strandat 3.387 kb on + strandat 3.491 kb on + strand, within EX28DRAFT_4195at 3.570 kb on - strand, within EX28DRAFT_4195

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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303 + EX28DRAFT_4193 0.15 +0.2
382 + EX28DRAFT_4193 0.23 +0.9
382 + EX28DRAFT_4193 0.23 -0.0
396 + EX28DRAFT_4193 0.24 +0.2
396 + EX28DRAFT_4193 0.24 -1.2
397 - EX28DRAFT_4193 0.24 +0.4
397 - EX28DRAFT_4193 0.24 -0.0
422 + EX28DRAFT_4193 0.27 -0.3
449 - EX28DRAFT_4193 0.29 -1.8
449 - EX28DRAFT_4193 0.29 +0.6
502 + EX28DRAFT_4193 0.34 +0.4
503 - EX28DRAFT_4193 0.34 +1.7
609 - EX28DRAFT_4193 0.45 +0.2
636 + EX28DRAFT_4193 0.47 -1.1
636 + EX28DRAFT_4193 0.47 +0.1
637 - EX28DRAFT_4193 0.48 +0.1
637 - EX28DRAFT_4193 0.48 +0.8
637 - EX28DRAFT_4193 0.48 +1.2
637 - EX28DRAFT_4193 0.48 -0.7
639 + EX28DRAFT_4193 0.48 -0.9
653 - EX28DRAFT_4193 0.49 -0.1
665 + EX28DRAFT_4193 0.50 -0.5
665 + EX28DRAFT_4193 0.50 +0.3
666 - EX28DRAFT_4193 0.50 +0.2
678 + EX28DRAFT_4193 0.52 -0.6
706 + EX28DRAFT_4193 0.54 -0.3
744 + EX28DRAFT_4193 0.58 -0.1
744 + EX28DRAFT_4193 0.58 +1.0
745 - EX28DRAFT_4193 0.58 -0.3
745 - EX28DRAFT_4193 0.58 +1.0
807 - EX28DRAFT_4193 0.64 -0.4
810 + EX28DRAFT_4193 0.64 +0.8
978 + EX28DRAFT_4193 0.81 -0.2
1,053 - EX28DRAFT_4193 0.88 +0.2
1,053 - EX28DRAFT_4193 0.88 +0.3
1,174 + -1.0
1,175 - -0.7
1,177 + -1.4
1,177 + +0.6
1,208 + -0.2
1,209 - +0.7
1,303 + -2.2
1,303 + +0.5
1,304 - +0.7
1,445 + EX28DRAFT_4194 0.16 +0.3
1,563 + EX28DRAFT_4194 0.23 +0.5
1,563 + EX28DRAFT_4194 0.23 -0.0
1,564 - EX28DRAFT_4194 0.24 -0.2
1,617 + EX28DRAFT_4194 0.27 -0.7
1,617 + EX28DRAFT_4194 0.27 +1.9
1,617 + EX28DRAFT_4194 0.27 -0.2
1,618 - EX28DRAFT_4194 0.27 -0.3
1,674 + EX28DRAFT_4194 0.31 +1.5
1,728 + EX28DRAFT_4194 0.34 +0.2
1,728 + EX28DRAFT_4194 0.34 +0.5
1,791 + EX28DRAFT_4194 0.39 +0.7
1,792 - EX28DRAFT_4194 0.39 -0.3
1,839 - EX28DRAFT_4194 0.42 +0.4
1,859 + EX28DRAFT_4194 0.43 -0.9
1,871 + EX28DRAFT_4194 0.44 -1.1
1,871 + EX28DRAFT_4194 0.44 +0.2
1,871 + EX28DRAFT_4194 0.44 +0.0
1,872 - EX28DRAFT_4194 0.44 +2.5
1,872 - EX28DRAFT_4194 0.44 +0.9
1,886 + EX28DRAFT_4194 0.45 +0.0
1,886 + EX28DRAFT_4194 0.45 -0.1
1,886 + EX28DRAFT_4194 0.45 +1.4
1,886 + EX28DRAFT_4194 0.45 -0.4
1,886 + EX28DRAFT_4194 0.45 +0.3
1,887 - EX28DRAFT_4194 0.45 -2.1
1,887 - EX28DRAFT_4194 0.45 -1.3
1,887 - EX28DRAFT_4194 0.45 +0.7
1,887 - EX28DRAFT_4194 0.45 +0.6
1,887 - EX28DRAFT_4194 0.45 +1.5
1,887 - EX28DRAFT_4194 0.45 +0.3
1,887 - EX28DRAFT_4194 0.45 +0.1
1,890 - EX28DRAFT_4194 0.45 -1.2
1,890 - EX28DRAFT_4194 0.45 -0.1
1,921 - EX28DRAFT_4194 0.47 -0.8
2,067 - EX28DRAFT_4194 0.57 -0.1
2,133 + EX28DRAFT_4194 0.61 -0.2
2,134 - EX28DRAFT_4194 0.61 +0.2
2,167 + EX28DRAFT_4194 0.64 +0.9
2,167 + EX28DRAFT_4194 0.64 -0.3
2,236 - EX28DRAFT_4194 0.68 +1.4
2,277 + EX28DRAFT_4194 0.71 -0.4
2,279 + EX28DRAFT_4194 0.71 +0.2
2,280 - EX28DRAFT_4194 0.71 -0.2
2,280 - EX28DRAFT_4194 0.71 -2.8
2,313 + EX28DRAFT_4194 0.73 -3.0
2,314 - EX28DRAFT_4194 0.73 +0.2
2,358 - EX28DRAFT_4194 0.76 +0.0
2,365 + EX28DRAFT_4194 0.77 +0.3
2,366 - EX28DRAFT_4194 0.77 +0.0
2,367 + EX28DRAFT_4194 0.77 +1.2
2,367 + EX28DRAFT_4194 0.77 -0.5
2,385 + EX28DRAFT_4194 0.78 -0.2
2,386 - EX28DRAFT_4194 0.78 -0.2
2,397 + EX28DRAFT_4194 0.79 +0.3
2,435 + EX28DRAFT_4194 0.82 +0.1
2,435 + EX28DRAFT_4194 0.82 +0.4
2,435 + EX28DRAFT_4194 0.82 +0.1
2,435 + EX28DRAFT_4194 0.82 +0.3
2,436 - EX28DRAFT_4194 0.82 +0.2
2,436 - EX28DRAFT_4194 0.82 +0.8
2,503 - EX28DRAFT_4194 0.86 -0.3
2,560 + EX28DRAFT_4194 0.90 +1.1
2,568 - +0.0
2,582 + -0.1
2,640 + +0.3
2,641 - +0.6
2,662 - +0.2
2,707 + +1.2
2,708 - -0.3
2,708 - -0.1
2,708 - +2.4
2,712 + +0.4
2,712 + +0.1
2,712 + +0.3
2,712 + +0.1
2,712 + +0.4
2,712 + +0.4
2,713 - -0.1
2,713 - -0.1
2,713 - +0.1
2,716 + -0.3
2,717 - -0.5
2,717 - -0.2
2,819 - +0.5
2,819 - -0.4
2,822 + +0.2
2,822 + +0.0
2,822 + -2.5
2,823 - -1.8
2,835 + -0.3
3,056 - -0.1
3,076 - -0.2
3,247 - -0.0
3,302 + -0.8
3,387 + +0.1
3,491 + EX28DRAFT_4195 0.13 +1.3
3,570 - EX28DRAFT_4195 0.21 +0.4

Or see this region's nucleotide sequence