Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4152

Experiment: M9 with sucrose; no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_4151 and EX28DRAFT_4152 are separated by 286 nucleotidesEX28DRAFT_4152 and EX28DRAFT_4153 are separated by 57 nucleotides EX28DRAFT_4151: EX28DRAFT_4151 - type IV pilus secretin (or competence protein) PilQ, at 131,884 to 133,044 _4151 EX28DRAFT_4152: EX28DRAFT_4152 - shikimate kinase (EC 2.7.1.71), at 133,331 to 133,852 _4152 EX28DRAFT_4153: EX28DRAFT_4153 - 3-dehydroquinate synthase (EC 4.2.3.4), at 133,910 to 134,998 _4153 Position (kb) 133 134Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 132.364 kb on - strand, within EX28DRAFT_4151at 132.364 kb on - strand, within EX28DRAFT_4151at 132.364 kb on - strand, within EX28DRAFT_4151at 132.780 kb on + strand, within EX28DRAFT_4151at 132.842 kb on + strand, within EX28DRAFT_4151at 132.842 kb on + strand, within EX28DRAFT_4151at 133.005 kb on - strandat 133.015 kb on - strandat 133.015 kb on - strandat 133.018 kb on - strandat 133.111 kb on + strandat 133.112 kb on - strandat 133.117 kb on - strandat 133.117 kb on - strandat 133.117 kb on - strandat 133.117 kb on - strandat 133.117 kb on - strandat 133.117 kb on - strandat 133.145 kb on - strandat 133.151 kb on + strandat 133.151 kb on + strandat 133.152 kb on - strandat 133.152 kb on - strandat 133.152 kb on - strandat 133.159 kb on + strandat 133.181 kb on - strandat 133.237 kb on + strandat 133.238 kb on - strandat 133.244 kb on + strandat 133.244 kb on + strandat 133.315 kb on + strandat 133.318 kb on + strandat 133.349 kb on - strandat 133.488 kb on + strand, within EX28DRAFT_4152at 133.634 kb on + strand, within EX28DRAFT_4152at 133.828 kb on + strandat 133.862 kb on + strandat 133.864 kb on + strandat 133.864 kb on + strandat 133.865 kb on - strandat 133.865 kb on - strandat 133.866 kb on + strandat 133.866 kb on + strandat 133.866 kb on + strandat 133.867 kb on - strandat 133.891 kb on + strandat 133.927 kb on + strandat 133.943 kb on - strandat 134.479 kb on + strand, within EX28DRAFT_4153at 134.518 kb on + strand, within EX28DRAFT_4153at 134.519 kb on - strand, within EX28DRAFT_4153at 134.650 kb on + strand, within EX28DRAFT_4153at 134.852 kb on + strand, within EX28DRAFT_4153

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
remove
132,364 - EX28DRAFT_4151 0.41 +0.2
132,364 - EX28DRAFT_4151 0.41 +0.5
132,364 - EX28DRAFT_4151 0.41 -0.1
132,780 + EX28DRAFT_4151 0.77 -0.1
132,842 + EX28DRAFT_4151 0.83 +0.1
132,842 + EX28DRAFT_4151 0.83 -0.3
133,005 - +0.7
133,015 - -0.6
133,015 - +1.3
133,018 - -0.5
133,111 + -0.7
133,112 - -0.1
133,117 - +0.2
133,117 - +0.0
133,117 - +0.2
133,117 - -1.6
133,117 - +0.2
133,117 - -3.8
133,145 - +0.2
133,151 + -0.6
133,151 + +0.2
133,152 - +0.2
133,152 - +0.6
133,152 - -0.3
133,159 + -0.6
133,181 - +0.1
133,237 + -0.1
133,238 - -2.6
133,244 + +0.6
133,244 + +0.2
133,315 + -0.7
133,318 + -0.1
133,349 - -1.6
133,488 + EX28DRAFT_4152 0.30 -1.1
133,634 + EX28DRAFT_4152 0.58 +0.4
133,828 + -1.6
133,862 + +0.3
133,864 + -1.7
133,864 + -0.6
133,865 - -3.1
133,865 - -2.6
133,866 + -0.4
133,866 + -0.7
133,866 + +1.1
133,867 - +0.4
133,891 + -1.5
133,927 + -1.6
133,943 - -2.6
134,479 + EX28DRAFT_4153 0.52 -3.1
134,518 + EX28DRAFT_4153 0.56 -4.0
134,519 - EX28DRAFT_4153 0.56 -4.0
134,650 + EX28DRAFT_4153 0.68 -3.4
134,852 + EX28DRAFT_4153 0.87 -0.6

Or see this region's nucleotide sequence