Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4124

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4122 and EX28DRAFT_4123 are separated by 16 nucleotidesEX28DRAFT_4123 and EX28DRAFT_4124 are separated by 62 nucleotidesEX28DRAFT_4124 and EX28DRAFT_4125 are separated by 585 nucleotides EX28DRAFT_4122: EX28DRAFT_4122 - rhomboid family protease GlpG, at 97,701 to 98,531 _4122 EX28DRAFT_4123: EX28DRAFT_4123 - transcriptional regulator, DeoR family, at 98,548 to 99,306 _4123 EX28DRAFT_4124: EX28DRAFT_4124 - ATP-dependent transcriptional regulator, at 99,369 to 102,074 _4124 EX28DRAFT_4125: EX28DRAFT_4125 - glycogen/starch/alpha-glucan phosphorylases, at 102,660 to 105,053 _4125 Position (kb) 99 100 101 102 103Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 98.370 kb on + strand, within EX28DRAFT_4122at 98.371 kb on - strand, within EX28DRAFT_4122at 98.387 kb on - strand, within EX28DRAFT_4122at 98.387 kb on - strand, within EX28DRAFT_4122at 98.444 kb on + strand, within EX28DRAFT_4122at 98.529 kb on + strandat 98.529 kb on + strandat 98.602 kb on + strandat 98.836 kb on - strand, within EX28DRAFT_4123at 99.133 kb on - strand, within EX28DRAFT_4123at 99.279 kb on + strandat 99.524 kb on - strandat 99.532 kb on + strandat 99.863 kb on - strand, within EX28DRAFT_4124at 99.963 kb on + strand, within EX28DRAFT_4124at 100.028 kb on + strand, within EX28DRAFT_4124at 100.100 kb on - strand, within EX28DRAFT_4124at 100.140 kb on - strand, within EX28DRAFT_4124at 101.116 kb on + strand, within EX28DRAFT_4124at 101.314 kb on + strand, within EX28DRAFT_4124at 101.687 kb on - strand, within EX28DRAFT_4124at 101.704 kb on + strand, within EX28DRAFT_4124at 101.705 kb on - strand, within EX28DRAFT_4124at 101.830 kb on - strandat 101.845 kb on + strandat 101.846 kb on - strandat 101.846 kb on - strandat 101.984 kb on + strandat 101.985 kb on - strandat 102.029 kb on + strandat 102.029 kb on + strandat 102.030 kb on - strandat 102.030 kb on - strandat 102.074 kb on + strandat 102.074 kb on + strandat 102.074 kb on + strandat 102.075 kb on - strandat 102.139 kb on - strandat 102.140 kb on + strandat 102.140 kb on + strandat 102.141 kb on - strandat 102.141 kb on - strandat 102.141 kb on - strandat 102.141 kb on - strandat 102.141 kb on - strandat 102.141 kb on - strandat 102.162 kb on + strandat 102.162 kb on + strandat 102.162 kb on + strandat 102.163 kb on - strandat 102.320 kb on + strandat 102.320 kb on + strandat 102.321 kb on - strandat 102.321 kb on - strandat 102.365 kb on + strandat 102.368 kb on + strandat 102.368 kb on + strandat 102.368 kb on + strandat 102.491 kb on - strandat 102.512 kb on + strandat 102.512 kb on + strandat 102.512 kb on + strandat 102.512 kb on + strandat 102.543 kb on + strandat 102.617 kb on + strandat 102.672 kb on - strandat 102.824 kb on + strandat 102.849 kb on + strandat 102.849 kb on + strandat 102.849 kb on + strandat 102.849 kb on + strandat 102.849 kb on + strandat 102.849 kb on + strandat 102.849 kb on + strandat 102.850 kb on - strandat 102.850 kb on - strandat 102.850 kb on - strandat 102.850 kb on - strandat 102.913 kb on - strand, within EX28DRAFT_4125at 102.950 kb on + strand, within EX28DRAFT_4125at 102.950 kb on + strand, within EX28DRAFT_4125at 102.951 kb on - strand, within EX28DRAFT_4125at 103.037 kb on + strand, within EX28DRAFT_4125

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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98,370 + EX28DRAFT_4122 0.81 -0.4
98,371 - EX28DRAFT_4122 0.81 -0.4
98,387 - EX28DRAFT_4122 0.83 +0.2
98,387 - EX28DRAFT_4122 0.83 -0.6
98,444 + EX28DRAFT_4122 0.89 -0.1
98,529 + -0.6
98,529 + +0.1
98,602 + +1.1
98,836 - EX28DRAFT_4123 0.38 -0.4
99,133 - EX28DRAFT_4123 0.77 -0.9
99,279 + -1.3
99,524 - +0.6
99,532 + -1.0
99,863 - EX28DRAFT_4124 0.18 +0.7
99,963 + EX28DRAFT_4124 0.22 -0.6
100,028 + EX28DRAFT_4124 0.24 -0.4
100,100 - EX28DRAFT_4124 0.27 -0.1
100,140 - EX28DRAFT_4124 0.28 +0.8
101,116 + EX28DRAFT_4124 0.65 +0.5
101,314 + EX28DRAFT_4124 0.72 +0.2
101,687 - EX28DRAFT_4124 0.86 +0.7
101,704 + EX28DRAFT_4124 0.86 +0.6
101,705 - EX28DRAFT_4124 0.86 +0.8
101,830 - -1.3
101,845 + -0.0
101,846 - +0.7
101,846 - +0.5
101,984 + -0.3
101,985 - +0.3
102,029 + +0.6
102,029 + -1.0
102,030 - -0.7
102,030 - +0.3
102,074 + -0.2
102,074 + -0.0
102,074 + +2.6
102,075 - +1.3
102,139 - +0.4
102,140 + +0.6
102,140 + -0.1
102,141 - -0.1
102,141 - +0.3
102,141 - +0.4
102,141 - +0.5
102,141 - +0.2
102,141 - -0.1
102,162 + +1.1
102,162 + +0.6
102,162 + -0.5
102,163 - +0.8
102,320 + +0.7
102,320 + -0.3
102,321 - +0.2
102,321 - -3.2
102,365 + +0.3
102,368 + +0.7
102,368 + -0.0
102,368 + +0.1
102,491 - -0.5
102,512 + -0.2
102,512 + +0.1
102,512 + +0.4
102,512 + -0.2
102,543 + -0.1
102,617 + +0.7
102,672 - +0.8
102,824 + +0.2
102,849 + -1.0
102,849 + +0.4
102,849 + +0.8
102,849 + +0.1
102,849 + +0.0
102,849 + -0.1
102,849 + -0.1
102,850 - -0.4
102,850 - -0.1
102,850 - +0.6
102,850 - -0.5
102,913 - EX28DRAFT_4125 0.11 -0.1
102,950 + EX28DRAFT_4125 0.12 +0.5
102,950 + EX28DRAFT_4125 0.12 -0.1
102,951 - EX28DRAFT_4125 0.12 +0.1
103,037 + EX28DRAFT_4125 0.16 -0.6

Or see this region's nucleotide sequence