Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4111

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4109 and EX28DRAFT_4110 are separated by 4 nucleotidesEX28DRAFT_4110 and EX28DRAFT_4111 are separated by 72 nucleotidesEX28DRAFT_4111 and EX28DRAFT_4112 are separated by 167 nucleotidesEX28DRAFT_4112 and EX28DRAFT_4113 are separated by 113 nucleotides EX28DRAFT_4109: EX28DRAFT_4109 - Arabinose efflux permease, at 80,995 to 82,212 _4109 EX28DRAFT_4110: EX28DRAFT_4110 - hypothetical protein, at 82,217 to 82,774 _4110 EX28DRAFT_4111: EX28DRAFT_4111 - conserved hypothetical integral membrane protein, at 82,847 to 83,512 _4111 EX28DRAFT_4112: EX28DRAFT_4112 - Predicted redox protein, regulator of disulfide bond formation, at 83,680 to 83,922 _4112 EX28DRAFT_4113: EX28DRAFT_4113 - membrane protein, MarC family, at 84,036 to 84,629 _4113 Position (kb) 82 83 84Strain fitness (log2 ratio) -1 0 1 2at 81.870 kb on - strand, within EX28DRAFT_4109at 81.983 kb on + strand, within EX28DRAFT_4109at 82.027 kb on + strand, within EX28DRAFT_4109at 82.027 kb on + strand, within EX28DRAFT_4109at 82.028 kb on - strand, within EX28DRAFT_4109at 82.044 kb on + strand, within EX28DRAFT_4109at 82.111 kb on + strandat 82.111 kb on + strandat 82.111 kb on + strandat 82.111 kb on + strandat 82.112 kb on - strandat 82.237 kb on + strandat 82.238 kb on - strandat 82.418 kb on - strand, within EX28DRAFT_4110at 82.712 kb on - strand, within EX28DRAFT_4110at 82.756 kb on - strandat 82.756 kb on - strandat 82.760 kb on - strandat 82.880 kb on - strandat 82.904 kb on - strandat 82.965 kb on + strand, within EX28DRAFT_4111at 83.050 kb on + strand, within EX28DRAFT_4111at 83.165 kb on - strand, within EX28DRAFT_4111at 83.241 kb on + strand, within EX28DRAFT_4111at 83.241 kb on + strand, within EX28DRAFT_4111at 83.241 kb on + strand, within EX28DRAFT_4111at 83.242 kb on - strand, within EX28DRAFT_4111at 83.242 kb on - strand, within EX28DRAFT_4111at 83.263 kb on - strand, within EX28DRAFT_4111at 83.427 kb on + strand, within EX28DRAFT_4111at 83.428 kb on - strand, within EX28DRAFT_4111at 83.428 kb on - strand, within EX28DRAFT_4111at 83.512 kb on + strandat 83.512 kb on + strandat 83.513 kb on - strandat 83.650 kb on + strandat 83.651 kb on - strandat 83.651 kb on - strandat 83.920 kb on + strandat 83.921 kb on - strandat 83.940 kb on + strandat 83.940 kb on + strandat 83.941 kb on - strandat 83.974 kb on + strandat 83.974 kb on + strandat 83.974 kb on + strandat 83.974 kb on + strandat 83.974 kb on + strandat 84.177 kb on - strand, within EX28DRAFT_4113at 84.180 kb on - strand, within EX28DRAFT_4113at 84.375 kb on - strand, within EX28DRAFT_4113at 84.375 kb on - strand, within EX28DRAFT_4113at 84.395 kb on + strand, within EX28DRAFT_4113at 84.473 kb on + strand, within EX28DRAFT_4113

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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81,870 - EX28DRAFT_4109 0.72 -0.6
81,983 + EX28DRAFT_4109 0.81 -0.5
82,027 + EX28DRAFT_4109 0.85 +0.9
82,027 + EX28DRAFT_4109 0.85 +0.7
82,028 - EX28DRAFT_4109 0.85 -0.3
82,044 + EX28DRAFT_4109 0.86 +0.2
82,111 + +0.0
82,111 + +0.4
82,111 + -0.1
82,111 + -0.3
82,112 - -0.4
82,237 + +2.0
82,238 - +1.2
82,418 - EX28DRAFT_4110 0.36 +0.0
82,712 - EX28DRAFT_4110 0.89 -0.5
82,756 - -0.2
82,756 - -0.4
82,760 - +0.5
82,880 - +0.4
82,904 - -0.3
82,965 + EX28DRAFT_4111 0.18 +1.1
83,050 + EX28DRAFT_4111 0.30 +0.3
83,165 - EX28DRAFT_4111 0.48 +0.6
83,241 + EX28DRAFT_4111 0.59 -0.8
83,241 + EX28DRAFT_4111 0.59 +1.6
83,241 + EX28DRAFT_4111 0.59 +1.0
83,242 - EX28DRAFT_4111 0.59 -0.2
83,242 - EX28DRAFT_4111 0.59 -0.6
83,263 - EX28DRAFT_4111 0.62 -0.1
83,427 + EX28DRAFT_4111 0.87 -1.4
83,428 - EX28DRAFT_4111 0.87 +0.2
83,428 - EX28DRAFT_4111 0.87 +0.2
83,512 + +0.4
83,512 + -1.2
83,513 - +0.2
83,650 + +0.0
83,651 - -1.0
83,651 - -0.8
83,920 + +0.2
83,921 - +1.4
83,940 + +1.0
83,940 + +1.6
83,941 - -0.5
83,974 + -0.7
83,974 + +0.2
83,974 + +0.2
83,974 + +0.1
83,974 + -0.6
84,177 - EX28DRAFT_4113 0.24 +0.1
84,180 - EX28DRAFT_4113 0.24 -0.6
84,375 - EX28DRAFT_4113 0.57 +0.8
84,375 - EX28DRAFT_4113 0.57 -0.2
84,395 + EX28DRAFT_4113 0.60 -0.1
84,473 + EX28DRAFT_4113 0.74 -0.5

Or see this region's nucleotide sequence