Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4105

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4103 and EX28DRAFT_4104 overlap by 20 nucleotidesEX28DRAFT_4104 and EX28DRAFT_4105 overlap by 4 nucleotidesEX28DRAFT_4105 and EX28DRAFT_4106 are separated by 68 nucleotides EX28DRAFT_4103: EX28DRAFT_4103 - Acyl carrier protein, at 76,098 to 76,355 _4103 EX28DRAFT_4104: EX28DRAFT_4104 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 76,336 to 77,151 _4104 EX28DRAFT_4105: EX28DRAFT_4105 - Beta-ketoacyl synthase, N-terminal domain, at 77,148 to 77,870 _4105 EX28DRAFT_4106: EX28DRAFT_4106 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 77,939 to 79,003 _4106 Position (kb) 77 78Strain fitness (log2 ratio) -1 0 1at 76.193 kb on - strand, within EX28DRAFT_4103at 76.233 kb on - strand, within EX28DRAFT_4103at 76.331 kb on + strandat 76.342 kb on + strandat 76.359 kb on + strandat 76.402 kb on + strandat 76.402 kb on + strandat 76.403 kb on - strandat 76.403 kb on - strandat 76.403 kb on - strandat 76.457 kb on + strand, within EX28DRAFT_4104at 76.458 kb on - strand, within EX28DRAFT_4104at 76.526 kb on + strand, within EX28DRAFT_4104at 76.847 kb on + strand, within EX28DRAFT_4104at 76.847 kb on + strand, within EX28DRAFT_4104at 77.327 kb on - strand, within EX28DRAFT_4105at 77.445 kb on + strand, within EX28DRAFT_4105at 77.446 kb on - strand, within EX28DRAFT_4105at 77.446 kb on - strand, within EX28DRAFT_4105at 77.480 kb on + strand, within EX28DRAFT_4105at 77.480 kb on + strand, within EX28DRAFT_4105at 77.481 kb on - strand, within EX28DRAFT_4105at 77.523 kb on - strand, within EX28DRAFT_4105at 77.872 kb on + strandat 77.873 kb on - strandat 77.891 kb on + strandat 77.891 kb on + strandat 77.891 kb on + strandat 77.930 kb on + strandat 77.931 kb on - strandat 77.940 kb on + strandat 77.966 kb on + strandat 77.966 kb on + strandat 77.971 kb on + strandat 77.971 kb on + strandat 77.972 kb on - strandat 77.972 kb on - strandat 78.037 kb on - strandat 78.065 kb on - strand, within EX28DRAFT_4106at 78.067 kb on + strand, within EX28DRAFT_4106at 78.067 kb on + strand, within EX28DRAFT_4106at 78.068 kb on - strand, within EX28DRAFT_4106at 78.068 kb on - strand, within EX28DRAFT_4106at 78.079 kb on + strand, within EX28DRAFT_4106at 78.079 kb on + strand, within EX28DRAFT_4106at 78.079 kb on + strand, within EX28DRAFT_4106at 78.080 kb on - strand, within EX28DRAFT_4106at 78.090 kb on + strand, within EX28DRAFT_4106at 78.485 kb on + strand, within EX28DRAFT_4106at 78.486 kb on - strand, within EX28DRAFT_4106at 78.487 kb on + strand, within EX28DRAFT_4106at 78.487 kb on + strand, within EX28DRAFT_4106at 78.487 kb on + strand, within EX28DRAFT_4106at 78.488 kb on - strand, within EX28DRAFT_4106at 78.488 kb on - strand, within EX28DRAFT_4106at 78.488 kb on - strand, within EX28DRAFT_4106at 78.488 kb on - strand, within EX28DRAFT_4106at 78.488 kb on - strand, within EX28DRAFT_4106at 78.488 kb on - strand, within EX28DRAFT_4106at 78.488 kb on - strand, within EX28DRAFT_4106at 78.488 kb on - strand, within EX28DRAFT_4106at 78.490 kb on - strand, within EX28DRAFT_4106at 78.490 kb on - strand, within EX28DRAFT_4106at 78.522 kb on + strand, within EX28DRAFT_4106at 78.523 kb on - strand, within EX28DRAFT_4106at 78.526 kb on - strand, within EX28DRAFT_4106at 78.660 kb on - strand, within EX28DRAFT_4106at 78.694 kb on + strand, within EX28DRAFT_4106at 78.804 kb on - strand, within EX28DRAFT_4106

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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76,193 - EX28DRAFT_4103 0.37 -0.5
76,233 - EX28DRAFT_4103 0.52 -0.1
76,331 + +0.1
76,342 + +0.2
76,359 + -0.3
76,402 + -0.7
76,402 + +0.0
76,403 - +0.7
76,403 - +0.4
76,403 - -0.4
76,457 + EX28DRAFT_4104 0.15 -0.1
76,458 - EX28DRAFT_4104 0.15 +0.4
76,526 + EX28DRAFT_4104 0.23 +0.7
76,847 + EX28DRAFT_4104 0.63 +0.6
76,847 + EX28DRAFT_4104 0.63 -0.1
77,327 - EX28DRAFT_4105 0.25 +0.8
77,445 + EX28DRAFT_4105 0.41 +0.3
77,446 - EX28DRAFT_4105 0.41 -0.5
77,446 - EX28DRAFT_4105 0.41 +0.2
77,480 + EX28DRAFT_4105 0.46 -0.1
77,480 + EX28DRAFT_4105 0.46 +1.5
77,481 - EX28DRAFT_4105 0.46 +0.4
77,523 - EX28DRAFT_4105 0.52 -0.0
77,872 + -0.5
77,873 - -0.5
77,891 + -0.6
77,891 + +0.4
77,891 + -0.2
77,930 + +0.7
77,931 - +0.4
77,940 + -1.7
77,966 + -0.0
77,966 + +0.3
77,971 + -0.5
77,971 + +0.5
77,972 - -0.3
77,972 - +0.4
78,037 - -0.1
78,065 - EX28DRAFT_4106 0.12 +1.0
78,067 + EX28DRAFT_4106 0.12 -1.0
78,067 + EX28DRAFT_4106 0.12 -0.8
78,068 - EX28DRAFT_4106 0.12 -0.5
78,068 - EX28DRAFT_4106 0.12 +0.1
78,079 + EX28DRAFT_4106 0.13 -0.3
78,079 + EX28DRAFT_4106 0.13 -0.9
78,079 + EX28DRAFT_4106 0.13 -0.5
78,080 - EX28DRAFT_4106 0.13 -0.3
78,090 + EX28DRAFT_4106 0.14 -0.0
78,485 + EX28DRAFT_4106 0.51 -0.4
78,486 - EX28DRAFT_4106 0.51 +0.4
78,487 + EX28DRAFT_4106 0.51 -0.0
78,487 + EX28DRAFT_4106 0.51 -0.1
78,487 + EX28DRAFT_4106 0.51 +1.6
78,488 - EX28DRAFT_4106 0.52 +0.4
78,488 - EX28DRAFT_4106 0.52 +1.1
78,488 - EX28DRAFT_4106 0.52 -0.3
78,488 - EX28DRAFT_4106 0.52 -0.5
78,488 - EX28DRAFT_4106 0.52 -1.0
78,488 - EX28DRAFT_4106 0.52 -0.5
78,488 - EX28DRAFT_4106 0.52 -1.0
78,488 - EX28DRAFT_4106 0.52 -0.7
78,490 - EX28DRAFT_4106 0.52 +0.1
78,490 - EX28DRAFT_4106 0.52 +0.2
78,522 + EX28DRAFT_4106 0.55 -0.2
78,523 - EX28DRAFT_4106 0.55 -0.0
78,526 - EX28DRAFT_4106 0.55 +0.1
78,660 - EX28DRAFT_4106 0.68 +0.5
78,694 + EX28DRAFT_4106 0.71 -0.6
78,804 - EX28DRAFT_4106 0.81 +1.7

Or see this region's nucleotide sequence