Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4021

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4020 and EX28DRAFT_4021 are separated by 0 nucleotidesEX28DRAFT_4021 and EX28DRAFT_4022 overlap by 7 nucleotides EX28DRAFT_4020: EX28DRAFT_4020 - aspartate-ammonia ligase (EC 6.3.1.1), at 229,829 to 230,821 _4020 EX28DRAFT_4021: EX28DRAFT_4021 - Uncharacterized protein containing a von Willebrand factor type A (vWA) domain, at 230,822 to 232,273 _4021 EX28DRAFT_4022: EX28DRAFT_4022 - MoxR-like ATPases, at 232,267 to 233,763 _4022 Position (kb) 230 231 232 233Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 229.823 kb on + strandat 229.823 kb on + strandat 229.823 kb on + strandat 229.823 kb on + strandat 229.824 kb on - strandat 229.824 kb on - strandat 229.827 kb on + strandat 229.827 kb on + strandat 229.827 kb on + strandat 229.842 kb on - strandat 229.842 kb on - strandat 229.873 kb on - strandat 229.966 kb on + strand, within EX28DRAFT_4020at 229.967 kb on - strand, within EX28DRAFT_4020at 230.105 kb on + strand, within EX28DRAFT_4020at 230.166 kb on - strand, within EX28DRAFT_4020at 230.406 kb on + strand, within EX28DRAFT_4020at 230.416 kb on - strand, within EX28DRAFT_4020at 230.416 kb on - strand, within EX28DRAFT_4020at 230.416 kb on - strand, within EX28DRAFT_4020at 230.424 kb on + strand, within EX28DRAFT_4020at 230.424 kb on + strand, within EX28DRAFT_4020at 230.428 kb on + strand, within EX28DRAFT_4020at 230.428 kb on + strand, within EX28DRAFT_4020at 230.480 kb on + strand, within EX28DRAFT_4020at 230.481 kb on - strand, within EX28DRAFT_4020at 230.481 kb on - strand, within EX28DRAFT_4020at 230.749 kb on - strandat 230.793 kb on + strandat 230.819 kb on + strandat 230.878 kb on + strandat 230.879 kb on - strandat 230.879 kb on - strandat 231.058 kb on + strand, within EX28DRAFT_4021at 231.059 kb on - strand, within EX28DRAFT_4021at 231.165 kb on + strand, within EX28DRAFT_4021at 231.194 kb on - strand, within EX28DRAFT_4021at 231.292 kb on + strand, within EX28DRAFT_4021at 231.439 kb on - strand, within EX28DRAFT_4021at 231.669 kb on + strand, within EX28DRAFT_4021at 231.787 kb on + strand, within EX28DRAFT_4021at 231.788 kb on - strand, within EX28DRAFT_4021at 231.788 kb on - strand, within EX28DRAFT_4021at 231.899 kb on - strand, within EX28DRAFT_4021at 232.009 kb on + strand, within EX28DRAFT_4021at 232.147 kb on + strandat 232.147 kb on + strandat 232.147 kb on + strandat 232.148 kb on - strandat 232.252 kb on + strandat 232.253 kb on - strandat 232.331 kb on - strandat 232.347 kb on + strandat 232.425 kb on + strand, within EX28DRAFT_4022at 232.624 kb on - strand, within EX28DRAFT_4022at 232.641 kb on + strand, within EX28DRAFT_4022at 232.641 kb on + strand, within EX28DRAFT_4022at 233.024 kb on + strand, within EX28DRAFT_4022at 233.024 kb on + strand, within EX28DRAFT_4022at 233.024 kb on + strand, within EX28DRAFT_4022at 233.024 kb on + strand, within EX28DRAFT_4022at 233.025 kb on - strand, within EX28DRAFT_4022at 233.025 kb on - strand, within EX28DRAFT_4022at 233.025 kb on - strand, within EX28DRAFT_4022at 233.026 kb on - strand, within EX28DRAFT_4022at 233.066 kb on + strand, within EX28DRAFT_4022at 233.066 kb on + strand, within EX28DRAFT_4022at 233.067 kb on - strand, within EX28DRAFT_4022at 233.067 kb on - strand, within EX28DRAFT_4022at 233.067 kb on - strand, within EX28DRAFT_4022at 233.067 kb on - strand, within EX28DRAFT_4022at 233.129 kb on + strand, within EX28DRAFT_4022at 233.129 kb on + strand, within EX28DRAFT_4022at 233.129 kb on + strand, within EX28DRAFT_4022at 233.261 kb on + strand, within EX28DRAFT_4022at 233.262 kb on - strand, within EX28DRAFT_4022at 233.263 kb on + strand, within EX28DRAFT_4022

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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229,823 + +0.8
229,823 + +0.5
229,823 + -0.2
229,823 + +0.0
229,824 - -0.7
229,824 - -0.1
229,827 + -0.5
229,827 + +0.6
229,827 + +0.3
229,842 - -2.9
229,842 - +1.0
229,873 - +1.0
229,966 + EX28DRAFT_4020 0.14 -0.3
229,967 - EX28DRAFT_4020 0.14 +0.8
230,105 + EX28DRAFT_4020 0.28 +0.0
230,166 - EX28DRAFT_4020 0.34 +0.2
230,406 + EX28DRAFT_4020 0.58 +0.8
230,416 - EX28DRAFT_4020 0.59 -0.2
230,416 - EX28DRAFT_4020 0.59 +0.4
230,416 - EX28DRAFT_4020 0.59 -0.6
230,424 + EX28DRAFT_4020 0.60 +0.4
230,424 + EX28DRAFT_4020 0.60 -0.0
230,428 + EX28DRAFT_4020 0.60 -0.3
230,428 + EX28DRAFT_4020 0.60 +0.3
230,480 + EX28DRAFT_4020 0.66 +0.1
230,481 - EX28DRAFT_4020 0.66 +1.5
230,481 - EX28DRAFT_4020 0.66 -0.6
230,749 - +0.4
230,793 + -0.8
230,819 + +1.9
230,878 + -0.4
230,879 - +0.0
230,879 - +0.6
231,058 + EX28DRAFT_4021 0.16 +0.4
231,059 - EX28DRAFT_4021 0.16 -0.1
231,165 + EX28DRAFT_4021 0.24 -0.3
231,194 - EX28DRAFT_4021 0.26 +0.1
231,292 + EX28DRAFT_4021 0.32 +1.7
231,439 - EX28DRAFT_4021 0.42 +1.2
231,669 + EX28DRAFT_4021 0.58 +0.3
231,787 + EX28DRAFT_4021 0.66 +0.7
231,788 - EX28DRAFT_4021 0.67 +0.2
231,788 - EX28DRAFT_4021 0.67 +1.2
231,899 - EX28DRAFT_4021 0.74 +1.4
232,009 + EX28DRAFT_4021 0.82 -1.2
232,147 + -0.4
232,147 + +0.1
232,147 + -1.9
232,148 - +0.6
232,252 + -0.6
232,253 - +0.0
232,331 - -0.0
232,347 + -1.2
232,425 + EX28DRAFT_4022 0.11 -0.6
232,624 - EX28DRAFT_4022 0.24 +0.1
232,641 + EX28DRAFT_4022 0.25 +0.3
232,641 + EX28DRAFT_4022 0.25 -1.0
233,024 + EX28DRAFT_4022 0.51 +0.0
233,024 + EX28DRAFT_4022 0.51 -0.3
233,024 + EX28DRAFT_4022 0.51 +0.1
233,024 + EX28DRAFT_4022 0.51 +0.2
233,025 - EX28DRAFT_4022 0.51 -0.6
233,025 - EX28DRAFT_4022 0.51 +0.5
233,025 - EX28DRAFT_4022 0.51 +0.4
233,026 - EX28DRAFT_4022 0.51 -0.0
233,066 + EX28DRAFT_4022 0.53 +1.0
233,066 + EX28DRAFT_4022 0.53 -3.6
233,067 - EX28DRAFT_4022 0.53 +0.2
233,067 - EX28DRAFT_4022 0.53 +0.3
233,067 - EX28DRAFT_4022 0.53 +0.4
233,067 - EX28DRAFT_4022 0.53 +0.3
233,129 + EX28DRAFT_4022 0.58 -0.1
233,129 + EX28DRAFT_4022 0.58 +0.5
233,129 + EX28DRAFT_4022 0.58 +0.7
233,261 + EX28DRAFT_4022 0.66 +0.1
233,262 - EX28DRAFT_4022 0.66 -0.0
233,263 + EX28DRAFT_4022 0.67 -0.2

Or see this region's nucleotide sequence