Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3978 and EX28DRAFT_3979 are separated by 123 nucleotides EX28DRAFT_3979 and EX28DRAFT_3980 overlap by 4 nucleotides EX28DRAFT_3980 and EX28DRAFT_3981 overlap by 17 nucleotides
EX28DRAFT_3978: EX28DRAFT_3978 - phosphoglycerate transporter family protein/D-galactonate transporter, at 185,302 to 186,594
_3978
EX28DRAFT_3979: EX28DRAFT_3979 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 186,718 to 187,866
_3979
EX28DRAFT_3980: EX28DRAFT_3980 - 2-keto-3-deoxy-6-phosphogluconate aldolase, at 187,863 to 188,480
_3980
EX28DRAFT_3981: EX28DRAFT_3981 - 2-keto-3-deoxy-galactonokinase, at 188,464 to 189,342
_3981
Position (kb) 186
187
188 Strain fitness (log2 ratio) -1
0
1 at 185.799 kb on - strand, within EX28DRAFT_3978 at 185.875 kb on - strand, within EX28DRAFT_3978 at 185.975 kb on + strand, within EX28DRAFT_3978 at 185.975 kb on + strand, within EX28DRAFT_3978 at 185.976 kb on - strand, within EX28DRAFT_3978 at 186.024 kb on - strand, within EX28DRAFT_3978 at 186.162 kb on - strand, within EX28DRAFT_3978 at 186.344 kb on + strand, within EX28DRAFT_3978 at 186.405 kb on - strand, within EX28DRAFT_3978 at 186.432 kb on - strand, within EX28DRAFT_3978 at 186.450 kb on + strand, within EX28DRAFT_3978 at 186.509 kb on + strand at 186.509 kb on + strand at 186.509 kb on + strand at 186.510 kb on - strand at 186.528 kb on + strand at 186.529 kb on - strand at 186.662 kb on - strand at 186.663 kb on + strand at 186.671 kb on + strand at 186.671 kb on + strand at 186.671 kb on + strand at 186.672 kb on - strand at 186.675 kb on + strand at 186.676 kb on - strand at 186.676 kb on - strand at 186.705 kb on + strand at 186.915 kb on + strand, within EX28DRAFT_3979 at 186.915 kb on + strand, within EX28DRAFT_3979 at 186.915 kb on + strand, within EX28DRAFT_3979 at 186.916 kb on - strand, within EX28DRAFT_3979 at 186.916 kb on - strand, within EX28DRAFT_3979 at 187.034 kb on + strand, within EX28DRAFT_3979 at 187.137 kb on + strand, within EX28DRAFT_3979 at 187.209 kb on - strand, within EX28DRAFT_3979 at 187.515 kb on + strand, within EX28DRAFT_3979 at 187.515 kb on + strand, within EX28DRAFT_3979 at 187.516 kb on - strand, within EX28DRAFT_3979 at 187.517 kb on + strand, within EX28DRAFT_3979 at 187.518 kb on - strand, within EX28DRAFT_3979 at 187.665 kb on - strand, within EX28DRAFT_3979 at 187.744 kb on + strand, within EX28DRAFT_3979 at 187.745 kb on - strand, within EX28DRAFT_3979 at 187.841 kb on + strand at 187.858 kb on + strand at 187.858 kb on + strand at 188.071 kb on + strand, within EX28DRAFT_3980 at 188.072 kb on - strand, within EX28DRAFT_3980
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 185,799 - EX28DRAFT_3978 0.38 -0.1 185,875 - EX28DRAFT_3978 0.44 -1.7 185,975 + EX28DRAFT_3978 0.52 +0.6 185,975 + EX28DRAFT_3978 0.52 -0.2 185,976 - EX28DRAFT_3978 0.52 -0.6 186,024 - EX28DRAFT_3978 0.56 +1.6 186,162 - EX28DRAFT_3978 0.67 +0.9 186,344 + EX28DRAFT_3978 0.81 -0.0 186,405 - EX28DRAFT_3978 0.85 -1.1 186,432 - EX28DRAFT_3978 0.87 +0.8 186,450 + EX28DRAFT_3978 0.89 -0.5 186,509 + -0.0 186,509 + -0.3 186,509 + -1.1 186,510 - +0.9 186,528 + -0.4 186,529 - -0.1 186,662 - -0.3 186,663 + -0.3 186,671 + -0.7 186,671 + +0.0 186,671 + +0.3 186,672 - -1.2 186,675 + +0.2 186,676 - -0.8 186,676 - +0.1 186,705 + +0.6 186,915 + EX28DRAFT_3979 0.17 +0.1 186,915 + EX28DRAFT_3979 0.17 -0.9 186,915 + EX28DRAFT_3979 0.17 -0.2 186,916 - EX28DRAFT_3979 0.17 -0.8 186,916 - EX28DRAFT_3979 0.17 -0.3 187,034 + EX28DRAFT_3979 0.28 +0.0 187,137 + EX28DRAFT_3979 0.36 -0.1 187,209 - EX28DRAFT_3979 0.43 +0.6 187,515 + EX28DRAFT_3979 0.69 -0.4 187,515 + EX28DRAFT_3979 0.69 +0.1 187,516 - EX28DRAFT_3979 0.69 -0.2 187,517 + EX28DRAFT_3979 0.70 -0.3 187,518 - EX28DRAFT_3979 0.70 +0.0 187,665 - EX28DRAFT_3979 0.82 -1.3 187,744 + EX28DRAFT_3979 0.89 -0.1 187,745 - EX28DRAFT_3979 0.89 -0.3 187,841 + -0.1 187,858 + -0.3 187,858 + +1.0 188,071 + EX28DRAFT_3980 0.34 -0.9 188,072 - EX28DRAFT_3980 0.34 +0.3
Or see this region's nucleotide sequence