Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3915

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3913 and EX28DRAFT_3914 are separated by 129 nucleotidesEX28DRAFT_3914 and EX28DRAFT_3915 are separated by 1 nucleotidesEX28DRAFT_3915 and EX28DRAFT_3916 are separated by 706 nucleotides EX28DRAFT_3913: EX28DRAFT_3913 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 123,127 to 124,125 _3913 EX28DRAFT_3914: EX28DRAFT_3914 - hypothetical protein, at 124,255 to 124,734 _3914 EX28DRAFT_3915: EX28DRAFT_3915 - DNA-binding winged-HTH domains, at 124,736 to 125,497 _3915 EX28DRAFT_3916: EX28DRAFT_3916 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 126,204 to 126,806 _3916 Position (kb) 124 125 126Strain fitness (log2 ratio) -3 -2 -1 0 1at 123.751 kb on - strand, within EX28DRAFT_3913at 123.751 kb on - strand, within EX28DRAFT_3913at 123.751 kb on - strand, within EX28DRAFT_3913at 123.751 kb on - strand, within EX28DRAFT_3913at 123.755 kb on - strand, within EX28DRAFT_3913at 123.755 kb on - strand, within EX28DRAFT_3913at 123.776 kb on + strand, within EX28DRAFT_3913at 123.852 kb on + strand, within EX28DRAFT_3913at 123.852 kb on + strand, within EX28DRAFT_3913at 123.852 kb on + strand, within EX28DRAFT_3913at 123.852 kb on + strand, within EX28DRAFT_3913at 123.853 kb on - strand, within EX28DRAFT_3913at 123.965 kb on - strand, within EX28DRAFT_3913at 124.013 kb on - strand, within EX28DRAFT_3913at 124.057 kb on + strandat 124.078 kb on - strandat 124.146 kb on - strandat 124.175 kb on + strandat 124.188 kb on + strandat 124.214 kb on - strandat 124.283 kb on + strandat 124.338 kb on + strand, within EX28DRAFT_3914at 124.347 kb on - strand, within EX28DRAFT_3914at 124.350 kb on + strand, within EX28DRAFT_3914at 124.569 kb on - strand, within EX28DRAFT_3914at 124.611 kb on + strand, within EX28DRAFT_3914at 124.644 kb on - strand, within EX28DRAFT_3914at 124.644 kb on - strand, within EX28DRAFT_3914at 124.662 kb on - strand, within EX28DRAFT_3914at 124.664 kb on + strand, within EX28DRAFT_3914at 124.737 kb on + strandat 124.750 kb on + strandat 124.755 kb on + strandat 124.765 kb on + strandat 124.842 kb on + strand, within EX28DRAFT_3915at 124.842 kb on + strand, within EX28DRAFT_3915at 124.843 kb on - strand, within EX28DRAFT_3915at 124.939 kb on - strand, within EX28DRAFT_3915at 124.989 kb on + strand, within EX28DRAFT_3915at 124.990 kb on - strand, within EX28DRAFT_3915at 125.046 kb on - strand, within EX28DRAFT_3915at 125.263 kb on + strand, within EX28DRAFT_3915at 125.269 kb on + strand, within EX28DRAFT_3915at 125.281 kb on - strand, within EX28DRAFT_3915at 125.281 kb on - strand, within EX28DRAFT_3915at 125.284 kb on + strand, within EX28DRAFT_3915at 125.285 kb on - strand, within EX28DRAFT_3915at 125.285 kb on - strand, within EX28DRAFT_3915at 125.285 kb on - strand, within EX28DRAFT_3915at 125.350 kb on + strand, within EX28DRAFT_3915at 125.366 kb on + strand, within EX28DRAFT_3915at 125.367 kb on - strand, within EX28DRAFT_3915at 125.370 kb on - strand, within EX28DRAFT_3915at 125.476 kb on + strandat 125.477 kb on - strandat 125.479 kb on + strandat 125.485 kb on - strandat 125.491 kb on + strandat 125.497 kb on + strandat 125.507 kb on + strandat 125.512 kb on - strandat 125.587 kb on + strandat 125.613 kb on + strandat 125.614 kb on - strandat 125.951 kb on - strandat 125.953 kb on + strandat 126.102 kb on + strandat 126.104 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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123,751 - EX28DRAFT_3913 0.62 -0.2
123,751 - EX28DRAFT_3913 0.62 +0.3
123,751 - EX28DRAFT_3913 0.62 +1.3
123,751 - EX28DRAFT_3913 0.62 -0.4
123,755 - EX28DRAFT_3913 0.63 +0.5
123,755 - EX28DRAFT_3913 0.63 -0.0
123,776 + EX28DRAFT_3913 0.65 +0.5
123,852 + EX28DRAFT_3913 0.73 +0.1
123,852 + EX28DRAFT_3913 0.73 +0.3
123,852 + EX28DRAFT_3913 0.73 +0.2
123,852 + EX28DRAFT_3913 0.73 +0.2
123,853 - EX28DRAFT_3913 0.73 -0.1
123,965 - EX28DRAFT_3913 0.84 +0.2
124,013 - EX28DRAFT_3913 0.89 -0.6
124,057 + +0.2
124,078 - +0.5
124,146 - +0.1
124,175 + +0.4
124,188 + -0.4
124,214 - -0.5
124,283 + -0.0
124,338 + EX28DRAFT_3914 0.17 -0.5
124,347 - EX28DRAFT_3914 0.19 +0.5
124,350 + EX28DRAFT_3914 0.20 +0.4
124,569 - EX28DRAFT_3914 0.65 +0.3
124,611 + EX28DRAFT_3914 0.74 +0.5
124,644 - EX28DRAFT_3914 0.81 +0.0
124,644 - EX28DRAFT_3914 0.81 +1.0
124,662 - EX28DRAFT_3914 0.85 -0.0
124,664 + EX28DRAFT_3914 0.85 -3.5
124,737 + +0.4
124,750 + -0.6
124,755 + +0.0
124,765 + -0.0
124,842 + EX28DRAFT_3915 0.14 -0.1
124,842 + EX28DRAFT_3915 0.14 -0.1
124,843 - EX28DRAFT_3915 0.14 -0.1
124,939 - EX28DRAFT_3915 0.27 -0.6
124,989 + EX28DRAFT_3915 0.33 +1.0
124,990 - EX28DRAFT_3915 0.33 -0.2
125,046 - EX28DRAFT_3915 0.41 -0.9
125,263 + EX28DRAFT_3915 0.69 +0.2
125,269 + EX28DRAFT_3915 0.70 -0.8
125,281 - EX28DRAFT_3915 0.72 +0.7
125,281 - EX28DRAFT_3915 0.72 -0.2
125,284 + EX28DRAFT_3915 0.72 +1.0
125,285 - EX28DRAFT_3915 0.72 -0.6
125,285 - EX28DRAFT_3915 0.72 +0.1
125,285 - EX28DRAFT_3915 0.72 -0.2
125,350 + EX28DRAFT_3915 0.81 +0.6
125,366 + EX28DRAFT_3915 0.83 -0.2
125,367 - EX28DRAFT_3915 0.83 -0.2
125,370 - EX28DRAFT_3915 0.83 -0.5
125,476 + -0.5
125,477 - -0.3
125,479 + +0.0
125,485 - +0.0
125,491 + -0.5
125,497 + -1.8
125,507 + +0.4
125,512 - -0.0
125,587 + -0.6
125,613 + -0.0
125,614 - -1.6
125,951 - +0.4
125,953 + -0.1
126,102 + +0.0
126,104 + -0.6

Or see this region's nucleotide sequence