Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3904

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3903 and EX28DRAFT_3904 are separated by 119 nucleotidesEX28DRAFT_3904 and EX28DRAFT_3905 are separated by 48 nucleotides EX28DRAFT_3903: EX28DRAFT_3903 - uracil-xanthine permease, at 112,441 to 113,832 _3903 EX28DRAFT_3904: EX28DRAFT_3904 - AsmA family, at 113,952 to 115,655 _3904 EX28DRAFT_3905: EX28DRAFT_3905 - Alpha-glucosidases, family 31 of glycosyl hydrolases, at 115,704 to 118,022 _3905 Position (kb) 113 114 115 116Strain fitness (log2 ratio) -1 0 1 2 3at 113.067 kb on + strand, within EX28DRAFT_3903at 113.067 kb on + strand, within EX28DRAFT_3903at 113.068 kb on - strand, within EX28DRAFT_3903at 113.354 kb on - strand, within EX28DRAFT_3903at 113.853 kb on - strandat 113.873 kb on - strandat 113.873 kb on - strandat 113.873 kb on - strandat 113.876 kb on + strandat 113.876 kb on + strandat 113.876 kb on + strandat 113.877 kb on - strandat 113.877 kb on - strandat 113.877 kb on - strandat 113.905 kb on + strandat 113.917 kb on - strandat 113.925 kb on + strandat 113.925 kb on + strandat 113.925 kb on + strandat 113.926 kb on - strandat 113.979 kb on + strandat 113.980 kb on - strandat 113.980 kb on - strandat 114.019 kb on - strandat 114.138 kb on - strand, within EX28DRAFT_3904at 114.171 kb on - strand, within EX28DRAFT_3904at 114.242 kb on + strand, within EX28DRAFT_3904at 114.243 kb on - strand, within EX28DRAFT_3904at 114.336 kb on - strand, within EX28DRAFT_3904at 114.518 kb on + strand, within EX28DRAFT_3904at 114.538 kb on + strand, within EX28DRAFT_3904at 114.693 kb on - strand, within EX28DRAFT_3904at 114.776 kb on - strand, within EX28DRAFT_3904at 114.854 kb on + strand, within EX28DRAFT_3904at 114.855 kb on - strand, within EX28DRAFT_3904at 114.855 kb on - strand, within EX28DRAFT_3904at 114.859 kb on - strand, within EX28DRAFT_3904at 115.032 kb on + strand, within EX28DRAFT_3904at 115.032 kb on + strand, within EX28DRAFT_3904at 115.226 kb on - strand, within EX28DRAFT_3904at 115.578 kb on - strandat 115.583 kb on + strandat 115.706 kb on - strandat 115.984 kb on + strand, within EX28DRAFT_3905at 116.006 kb on + strand, within EX28DRAFT_3905at 116.038 kb on + strand, within EX28DRAFT_3905at 116.072 kb on + strand, within EX28DRAFT_3905at 116.072 kb on + strand, within EX28DRAFT_3905at 116.137 kb on + strand, within EX28DRAFT_3905at 116.138 kb on - strand, within EX28DRAFT_3905at 116.200 kb on + strand, within EX28DRAFT_3905at 116.200 kb on + strand, within EX28DRAFT_3905at 116.201 kb on - strand, within EX28DRAFT_3905at 116.371 kb on + strand, within EX28DRAFT_3905at 116.452 kb on + strand, within EX28DRAFT_3905

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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113,067 + EX28DRAFT_3903 0.45 -1.5
113,067 + EX28DRAFT_3903 0.45 -0.5
113,068 - EX28DRAFT_3903 0.45 -0.0
113,354 - EX28DRAFT_3903 0.66 -0.1
113,853 - +1.0
113,873 - -0.1
113,873 - +0.2
113,873 - -0.4
113,876 + +1.4
113,876 + -0.3
113,876 + +0.1
113,877 - -0.7
113,877 - -0.9
113,877 - +0.4
113,905 + +0.3
113,917 - +0.3
113,925 + +0.1
113,925 + -1.3
113,925 + +0.4
113,926 - +0.2
113,979 + +0.2
113,980 - +0.9
113,980 - +0.6
114,019 - +3.2
114,138 - EX28DRAFT_3904 0.11 +0.6
114,171 - EX28DRAFT_3904 0.13 -0.0
114,242 + EX28DRAFT_3904 0.17 -0.4
114,243 - EX28DRAFT_3904 0.17 -0.0
114,336 - EX28DRAFT_3904 0.23 +0.0
114,518 + EX28DRAFT_3904 0.33 +0.2
114,538 + EX28DRAFT_3904 0.34 +1.1
114,693 - EX28DRAFT_3904 0.43 +0.5
114,776 - EX28DRAFT_3904 0.48 -1.4
114,854 + EX28DRAFT_3904 0.53 +0.2
114,855 - EX28DRAFT_3904 0.53 +0.1
114,855 - EX28DRAFT_3904 0.53 -0.9
114,859 - EX28DRAFT_3904 0.53 -0.2
115,032 + EX28DRAFT_3904 0.63 +0.3
115,032 + EX28DRAFT_3904 0.63 -0.2
115,226 - EX28DRAFT_3904 0.75 +0.7
115,578 - +0.2
115,583 + -0.2
115,706 - -0.1
115,984 + EX28DRAFT_3905 0.12 -0.3
116,006 + EX28DRAFT_3905 0.13 -0.0
116,038 + EX28DRAFT_3905 0.14 +1.4
116,072 + EX28DRAFT_3905 0.16 -0.7
116,072 + EX28DRAFT_3905 0.16 +0.1
116,137 + EX28DRAFT_3905 0.19 -0.3
116,138 - EX28DRAFT_3905 0.19 -0.5
116,200 + EX28DRAFT_3905 0.21 +0.5
116,200 + EX28DRAFT_3905 0.21 -0.1
116,201 - EX28DRAFT_3905 0.21 +0.2
116,371 + EX28DRAFT_3905 0.29 +0.4
116,452 + EX28DRAFT_3905 0.32 +0.3

Or see this region's nucleotide sequence