Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3868

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3867 and EX28DRAFT_3868 are separated by 15 nucleotidesEX28DRAFT_3868 and EX28DRAFT_3869 are separated by 27 nucleotides EX28DRAFT_3867: EX28DRAFT_3867 - Glycosyl transferases group 1, at 76,372 to 77,577 _3867 EX28DRAFT_3868: EX28DRAFT_3868 - hypothetical protein, at 77,593 to 78,507 _3868 EX28DRAFT_3869: EX28DRAFT_3869 - L-threonine 3-dehydrogenase (EC 1.1.1.103), at 78,535 to 79,563 _3869 Position (kb) 77 78 79Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 76.623 kb on + strand, within EX28DRAFT_3867at 76.624 kb on - strand, within EX28DRAFT_3867at 76.662 kb on + strand, within EX28DRAFT_3867at 76.753 kb on - strand, within EX28DRAFT_3867at 76.759 kb on - strand, within EX28DRAFT_3867at 76.957 kb on - strand, within EX28DRAFT_3867at 77.058 kb on + strand, within EX28DRAFT_3867at 77.261 kb on - strand, within EX28DRAFT_3867at 77.268 kb on + strand, within EX28DRAFT_3867at 77.269 kb on - strand, within EX28DRAFT_3867at 77.269 kb on - strand, within EX28DRAFT_3867at 77.284 kb on - strand, within EX28DRAFT_3867at 77.457 kb on + strandat 77.458 kb on - strandat 77.520 kb on + strandat 77.521 kb on - strandat 77.525 kb on - strandat 77.525 kb on - strandat 77.525 kb on - strandat 77.525 kb on - strandat 77.525 kb on - strandat 77.525 kb on - strandat 77.539 kb on + strandat 77.539 kb on + strandat 77.540 kb on - strandat 77.588 kb on + strandat 77.589 kb on - strandat 77.589 kb on - strandat 77.589 kb on - strandat 77.589 kb on - strandat 77.592 kb on + strandat 77.592 kb on + strandat 77.592 kb on + strandat 77.592 kb on + strandat 77.592 kb on + strandat 77.592 kb on + strandat 77.593 kb on - strandat 77.593 kb on - strandat 77.593 kb on - strandat 77.593 kb on - strandat 77.599 kb on - strandat 77.625 kb on + strandat 77.626 kb on - strandat 77.695 kb on - strand, within EX28DRAFT_3868at 77.738 kb on + strand, within EX28DRAFT_3868at 77.765 kb on - strand, within EX28DRAFT_3868at 77.881 kb on + strand, within EX28DRAFT_3868at 77.888 kb on - strand, within EX28DRAFT_3868at 77.889 kb on + strand, within EX28DRAFT_3868at 77.890 kb on - strand, within EX28DRAFT_3868at 77.899 kb on + strand, within EX28DRAFT_3868at 77.900 kb on - strand, within EX28DRAFT_3868at 77.955 kb on - strand, within EX28DRAFT_3868at 77.955 kb on - strand, within EX28DRAFT_3868at 78.022 kb on + strand, within EX28DRAFT_3868at 78.023 kb on - strand, within EX28DRAFT_3868at 78.094 kb on + strand, within EX28DRAFT_3868at 78.252 kb on - strand, within EX28DRAFT_3868at 78.285 kb on - strand, within EX28DRAFT_3868at 78.412 kb on + strand, within EX28DRAFT_3868at 78.412 kb on + strand, within EX28DRAFT_3868at 78.412 kb on + strand, within EX28DRAFT_3868at 78.457 kb on + strandat 78.458 kb on - strandat 78.540 kb on + strandat 78.627 kb on + strandat 78.628 kb on - strandat 78.630 kb on + strandat 78.630 kb on + strandat 78.678 kb on - strand, within EX28DRAFT_3869at 78.704 kb on + strand, within EX28DRAFT_3869at 78.704 kb on + strand, within EX28DRAFT_3869at 78.705 kb on - strand, within EX28DRAFT_3869at 78.705 kb on - strand, within EX28DRAFT_3869at 79.149 kb on + strand, within EX28DRAFT_3869at 79.150 kb on - strand, within EX28DRAFT_3869at 79.194 kb on - strand, within EX28DRAFT_3869at 79.236 kb on + strand, within EX28DRAFT_3869at 79.236 kb on + strand, within EX28DRAFT_3869at 79.237 kb on - strand, within EX28DRAFT_3869at 79.254 kb on + strand, within EX28DRAFT_3869at 79.255 kb on - strand, within EX28DRAFT_3869at 79.255 kb on - strand, within EX28DRAFT_3869at 79.294 kb on - strand, within EX28DRAFT_3869at 79.370 kb on + strand, within EX28DRAFT_3869at 79.430 kb on + strand, within EX28DRAFT_3869at 79.430 kb on + strand, within EX28DRAFT_3869at 79.430 kb on + strand, within EX28DRAFT_3869at 79.431 kb on - strand, within EX28DRAFT_3869

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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76,623 + EX28DRAFT_3867 0.21 -1.0
76,624 - EX28DRAFT_3867 0.21 -0.2
76,662 + EX28DRAFT_3867 0.24 -2.0
76,753 - EX28DRAFT_3867 0.32 -0.4
76,759 - EX28DRAFT_3867 0.32 -0.4
76,957 - EX28DRAFT_3867 0.49 +0.5
77,058 + EX28DRAFT_3867 0.57 -0.9
77,261 - EX28DRAFT_3867 0.74 -0.9
77,268 + EX28DRAFT_3867 0.74 -0.3
77,269 - EX28DRAFT_3867 0.74 -0.1
77,269 - EX28DRAFT_3867 0.74 -0.3
77,284 - EX28DRAFT_3867 0.76 +0.6
77,457 + +0.3
77,458 - +0.6
77,520 + -0.2
77,521 - +0.1
77,525 - +2.6
77,525 - +0.8
77,525 - +0.1
77,525 - +0.3
77,525 - +0.6
77,525 - +0.8
77,539 + -0.2
77,539 + -0.2
77,540 - -0.8
77,588 + +0.1
77,589 - +0.1
77,589 - -0.6
77,589 - +0.5
77,589 - -1.6
77,592 + -0.6
77,592 + +0.3
77,592 + -3.6
77,592 + +0.3
77,592 + -0.2
77,592 + -0.6
77,593 - +0.7
77,593 - +0.3
77,593 - +0.8
77,593 - -0.5
77,599 - +0.1
77,625 + +0.2
77,626 - +0.2
77,695 - EX28DRAFT_3868 0.11 -0.6
77,738 + EX28DRAFT_3868 0.16 +1.0
77,765 - EX28DRAFT_3868 0.19 -0.1
77,881 + EX28DRAFT_3868 0.31 +0.3
77,888 - EX28DRAFT_3868 0.32 +0.9
77,889 + EX28DRAFT_3868 0.32 +0.3
77,890 - EX28DRAFT_3868 0.32 -0.6
77,899 + EX28DRAFT_3868 0.33 +0.7
77,900 - EX28DRAFT_3868 0.34 +0.0
77,955 - EX28DRAFT_3868 0.40 +0.8
77,955 - EX28DRAFT_3868 0.40 -0.2
78,022 + EX28DRAFT_3868 0.47 +1.8
78,023 - EX28DRAFT_3868 0.47 +0.1
78,094 + EX28DRAFT_3868 0.55 -0.3
78,252 - EX28DRAFT_3868 0.72 +0.1
78,285 - EX28DRAFT_3868 0.76 +0.9
78,412 + EX28DRAFT_3868 0.90 -0.2
78,412 + EX28DRAFT_3868 0.90 +0.7
78,412 + EX28DRAFT_3868 0.90 +0.2
78,457 + -0.1
78,458 - -0.9
78,540 + +0.2
78,627 + +0.4
78,628 - -0.1
78,630 + -0.0
78,630 + +0.5
78,678 - EX28DRAFT_3869 0.14 +0.3
78,704 + EX28DRAFT_3869 0.16 +0.2
78,704 + EX28DRAFT_3869 0.16 -0.2
78,705 - EX28DRAFT_3869 0.17 -0.4
78,705 - EX28DRAFT_3869 0.17 -0.6
79,149 + EX28DRAFT_3869 0.60 -0.3
79,150 - EX28DRAFT_3869 0.60 -0.4
79,194 - EX28DRAFT_3869 0.64 -1.1
79,236 + EX28DRAFT_3869 0.68 -0.9
79,236 + EX28DRAFT_3869 0.68 +0.1
79,237 - EX28DRAFT_3869 0.68 +0.6
79,254 + EX28DRAFT_3869 0.70 +0.7
79,255 - EX28DRAFT_3869 0.70 +0.6
79,255 - EX28DRAFT_3869 0.70 +0.4
79,294 - EX28DRAFT_3869 0.74 +0.6
79,370 + EX28DRAFT_3869 0.81 -0.1
79,430 + EX28DRAFT_3869 0.87 +3.1
79,430 + EX28DRAFT_3869 0.87 +0.0
79,430 + EX28DRAFT_3869 0.87 +0.2
79,431 - EX28DRAFT_3869 0.87 -0.2

Or see this region's nucleotide sequence