Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3440 and EX28DRAFT_3441 are separated by 178 nucleotides EX28DRAFT_3441 and EX28DRAFT_3442 are separated by 98 nucleotides EX28DRAFT_3442 and EX28DRAFT_3443 are separated by 210 nucleotides
EX28DRAFT_3440: EX28DRAFT_3440 - trehalose operon repressor, proteobacterial, at 111,317 to 112,264
_3440
EX28DRAFT_3441: EX28DRAFT_3441 - RNA, at 112,443 to 112,553
_3441
EX28DRAFT_3442: EX28DRAFT_3442 - magnesium-translocating P-type ATPase, at 112,652 to 115,360
_3442
EX28DRAFT_3443: EX28DRAFT_3443 - Glycosyl hydrolase family 20, catalytic domain/Glycosyl hydrolase family 20, domain 2, at 115,571 to 117,955
_3443
Position (kb)
112
113
114
115
116 Strain fitness (log2 ratio)
-2
-1
0
1 at 111.928 kb on + strand, within EX28DRAFT_3440 at 111.987 kb on + strand, within EX28DRAFT_3440 at 112.250 kb on - strand at 112.269 kb on + strand at 112.270 kb on - strand at 112.293 kb on - strand at 112.293 kb on - strand at 112.293 kb on - strand at 112.293 kb on - strand at 112.312 kb on + strand at 112.312 kb on + strand at 112.313 kb on - strand at 112.315 kb on - strand at 112.371 kb on + strand at 112.372 kb on - strand at 112.373 kb on + strand at 112.373 kb on + strand at 112.374 kb on - strand at 112.406 kb on + strand at 112.407 kb on - strand at 112.407 kb on - strand at 112.416 kb on + strand at 112.434 kb on + strand at 112.442 kb on - strand at 112.651 kb on + strand at 112.652 kb on - strand at 112.652 kb on - strand at 112.652 kb on - strand at 112.854 kb on + strand at 112.935 kb on + strand, within EX28DRAFT_3442 at 113.001 kb on - strand, within EX28DRAFT_3442 at 113.152 kb on + strand, within EX28DRAFT_3442 at 113.253 kb on + strand, within EX28DRAFT_3442 at 113.254 kb on - strand, within EX28DRAFT_3442 at 113.548 kb on + strand, within EX28DRAFT_3442 at 113.549 kb on - strand, within EX28DRAFT_3442 at 113.710 kb on + strand, within EX28DRAFT_3442 at 114.110 kb on + strand, within EX28DRAFT_3442 at 114.110 kb on + strand, within EX28DRAFT_3442 at 114.282 kb on - strand, within EX28DRAFT_3442 at 114.282 kb on - strand, within EX28DRAFT_3442 at 114.282 kb on - strand, within EX28DRAFT_3442 at 114.350 kb on - strand, within EX28DRAFT_3442 at 114.352 kb on + strand, within EX28DRAFT_3442 at 114.399 kb on + strand, within EX28DRAFT_3442 at 114.399 kb on + strand, within EX28DRAFT_3442 at 114.399 kb on + strand, within EX28DRAFT_3442 at 114.400 kb on - strand, within EX28DRAFT_3442 at 114.675 kb on + strand, within EX28DRAFT_3442 at 114.756 kb on - strand, within EX28DRAFT_3442 at 114.873 kb on - strand, within EX28DRAFT_3442 at 114.873 kb on - strand, within EX28DRAFT_3442 at 114.873 kb on - strand, within EX28DRAFT_3442 at 114.967 kb on + strand, within EX28DRAFT_3442 at 114.967 kb on + strand, within EX28DRAFT_3442 at 114.968 kb on - strand, within EX28DRAFT_3442 at 114.988 kb on + strand, within EX28DRAFT_3442 at 114.988 kb on + strand, within EX28DRAFT_3442 at 114.989 kb on - strand, within EX28DRAFT_3442 at 114.989 kb on - strand, within EX28DRAFT_3442 at 115.120 kb on + strand at 115.120 kb on + strand at 115.120 kb on + strand at 115.121 kb on - strand at 115.238 kb on + strand at 115.268 kb on + strand at 115.268 kb on + strand at 115.301 kb on + strand at 115.302 kb on - strand at 115.544 kb on - strand at 115.559 kb on + strand at 115.895 kb on + strand, within EX28DRAFT_3443 at 115.895 kb on + strand, within EX28DRAFT_3443 at 115.927 kb on + strand, within EX28DRAFT_3443 at 115.967 kb on + strand, within EX28DRAFT_3443 at 116.203 kb on + strand, within EX28DRAFT_3443 at 116.203 kb on + strand, within EX28DRAFT_3443 at 116.238 kb on - strand, within EX28DRAFT_3443
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 111,928 + EX28DRAFT_3440 0.64 -0.0 111,987 + EX28DRAFT_3440 0.71 +0.0 112,250 - -0.4 112,269 + +0.2 112,270 - -0.7 112,293 - +0.5 112,293 - +0.4 112,293 - +0.6 112,293 - -0.7 112,312 + -0.9 112,312 + +0.4 112,313 - +0.4 112,315 - +0.2 112,371 + -0.5 112,372 - +0.1 112,373 + +0.1 112,373 + +0.4 112,374 - +0.3 112,406 + -1.0 112,407 - +0.5 112,407 - +0.8 112,416 + -0.4 112,434 + +0.2 112,442 - -1.3 112,651 + -0.2 112,652 - +0.3 112,652 - +0.6 112,652 - +0.2 112,854 + -0.5 112,935 + EX28DRAFT_3442 0.10 -1.1 113,001 - EX28DRAFT_3442 0.13 -0.9 113,152 + EX28DRAFT_3442 0.18 -0.2 113,253 + EX28DRAFT_3442 0.22 +0.1 113,254 - EX28DRAFT_3442 0.22 +0.3 113,548 + EX28DRAFT_3442 0.33 -0.2 113,549 - EX28DRAFT_3442 0.33 -0.2 113,710 + EX28DRAFT_3442 0.39 -1.4 114,110 + EX28DRAFT_3442 0.54 -0.2 114,110 + EX28DRAFT_3442 0.54 -0.1 114,282 - EX28DRAFT_3442 0.60 -0.9 114,282 - EX28DRAFT_3442 0.60 +1.7 114,282 - EX28DRAFT_3442 0.60 +0.9 114,350 - EX28DRAFT_3442 0.63 +0.4 114,352 + EX28DRAFT_3442 0.63 +0.2 114,399 + EX28DRAFT_3442 0.64 -1.8 114,399 + EX28DRAFT_3442 0.64 -2.3 114,399 + EX28DRAFT_3442 0.64 +0.2 114,400 - EX28DRAFT_3442 0.65 +0.1 114,675 + EX28DRAFT_3442 0.75 -0.1 114,756 - EX28DRAFT_3442 0.78 -0.1 114,873 - EX28DRAFT_3442 0.82 +0.6 114,873 - EX28DRAFT_3442 0.82 -0.5 114,873 - EX28DRAFT_3442 0.82 -1.1 114,967 + EX28DRAFT_3442 0.85 -0.4 114,967 + EX28DRAFT_3442 0.85 +0.4 114,968 - EX28DRAFT_3442 0.85 +0.2 114,988 + EX28DRAFT_3442 0.86 +0.4 114,988 + EX28DRAFT_3442 0.86 -0.1 114,989 - EX28DRAFT_3442 0.86 -0.3 114,989 - EX28DRAFT_3442 0.86 +0.2 115,120 + +0.7 115,120 + +0.1 115,120 + -0.8 115,121 - +0.0 115,238 + +0.1 115,268 + -0.3 115,268 + +0.1 115,301 + +0.3 115,302 - -0.5 115,544 - +0.1 115,559 + +0.1 115,895 + EX28DRAFT_3443 0.14 -0.0 115,895 + EX28DRAFT_3443 0.14 -0.2 115,927 + EX28DRAFT_3443 0.15 -2.1 115,967 + EX28DRAFT_3443 0.17 +0.0 116,203 + EX28DRAFT_3443 0.26 -0.2 116,203 + EX28DRAFT_3443 0.26 -0.2 116,238 - EX28DRAFT_3443 0.28 -0.1
Or see this region's nucleotide sequence