Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3442

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3440 and EX28DRAFT_3441 are separated by 178 nucleotidesEX28DRAFT_3441 and EX28DRAFT_3442 are separated by 98 nucleotidesEX28DRAFT_3442 and EX28DRAFT_3443 are separated by 210 nucleotides EX28DRAFT_3440: EX28DRAFT_3440 - trehalose operon repressor, proteobacterial, at 111,317 to 112,264 _3440 EX28DRAFT_3441: EX28DRAFT_3441 - RNA, at 112,443 to 112,553 _3441 EX28DRAFT_3442: EX28DRAFT_3442 - magnesium-translocating P-type ATPase, at 112,652 to 115,360 _3442 EX28DRAFT_3443: EX28DRAFT_3443 - Glycosyl hydrolase family 20, catalytic domain/Glycosyl hydrolase family 20, domain 2, at 115,571 to 117,955 _3443 Position (kb) 112 113 114 115 116Strain fitness (log2 ratio) -2 -1 0 1at 111.928 kb on + strand, within EX28DRAFT_3440at 111.987 kb on + strand, within EX28DRAFT_3440at 112.250 kb on - strandat 112.269 kb on + strandat 112.270 kb on - strandat 112.293 kb on - strandat 112.293 kb on - strandat 112.293 kb on - strandat 112.293 kb on - strandat 112.312 kb on + strandat 112.312 kb on + strandat 112.313 kb on - strandat 112.315 kb on - strandat 112.371 kb on + strandat 112.372 kb on - strandat 112.373 kb on + strandat 112.373 kb on + strandat 112.374 kb on - strandat 112.406 kb on + strandat 112.407 kb on - strandat 112.407 kb on - strandat 112.416 kb on + strandat 112.434 kb on + strandat 112.442 kb on - strandat 112.651 kb on + strandat 112.652 kb on - strandat 112.652 kb on - strandat 112.652 kb on - strandat 112.854 kb on + strandat 112.935 kb on + strand, within EX28DRAFT_3442at 113.001 kb on - strand, within EX28DRAFT_3442at 113.152 kb on + strand, within EX28DRAFT_3442at 113.253 kb on + strand, within EX28DRAFT_3442at 113.254 kb on - strand, within EX28DRAFT_3442at 113.548 kb on + strand, within EX28DRAFT_3442at 113.549 kb on - strand, within EX28DRAFT_3442at 113.710 kb on + strand, within EX28DRAFT_3442at 114.110 kb on + strand, within EX28DRAFT_3442at 114.110 kb on + strand, within EX28DRAFT_3442at 114.282 kb on - strand, within EX28DRAFT_3442at 114.282 kb on - strand, within EX28DRAFT_3442at 114.282 kb on - strand, within EX28DRAFT_3442at 114.350 kb on - strand, within EX28DRAFT_3442at 114.352 kb on + strand, within EX28DRAFT_3442at 114.399 kb on + strand, within EX28DRAFT_3442at 114.399 kb on + strand, within EX28DRAFT_3442at 114.399 kb on + strand, within EX28DRAFT_3442at 114.400 kb on - strand, within EX28DRAFT_3442at 114.675 kb on + strand, within EX28DRAFT_3442at 114.756 kb on - strand, within EX28DRAFT_3442at 114.873 kb on - strand, within EX28DRAFT_3442at 114.873 kb on - strand, within EX28DRAFT_3442at 114.873 kb on - strand, within EX28DRAFT_3442at 114.967 kb on + strand, within EX28DRAFT_3442at 114.967 kb on + strand, within EX28DRAFT_3442at 114.968 kb on - strand, within EX28DRAFT_3442at 114.988 kb on + strand, within EX28DRAFT_3442at 114.988 kb on + strand, within EX28DRAFT_3442at 114.989 kb on - strand, within EX28DRAFT_3442at 114.989 kb on - strand, within EX28DRAFT_3442at 115.120 kb on + strandat 115.120 kb on + strandat 115.120 kb on + strandat 115.121 kb on - strandat 115.238 kb on + strandat 115.268 kb on + strandat 115.268 kb on + strandat 115.301 kb on + strandat 115.302 kb on - strandat 115.544 kb on - strandat 115.559 kb on + strandat 115.895 kb on + strand, within EX28DRAFT_3443at 115.895 kb on + strand, within EX28DRAFT_3443at 115.927 kb on + strand, within EX28DRAFT_3443at 115.967 kb on + strand, within EX28DRAFT_3443at 116.203 kb on + strand, within EX28DRAFT_3443at 116.203 kb on + strand, within EX28DRAFT_3443at 116.238 kb on - strand, within EX28DRAFT_3443

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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111,928 + EX28DRAFT_3440 0.64 -0.0
111,987 + EX28DRAFT_3440 0.71 +0.0
112,250 - -0.4
112,269 + +0.2
112,270 - -0.7
112,293 - +0.5
112,293 - +0.4
112,293 - +0.6
112,293 - -0.7
112,312 + -0.9
112,312 + +0.4
112,313 - +0.4
112,315 - +0.2
112,371 + -0.5
112,372 - +0.1
112,373 + +0.1
112,373 + +0.4
112,374 - +0.3
112,406 + -1.0
112,407 - +0.5
112,407 - +0.8
112,416 + -0.4
112,434 + +0.2
112,442 - -1.3
112,651 + -0.2
112,652 - +0.3
112,652 - +0.6
112,652 - +0.2
112,854 + -0.5
112,935 + EX28DRAFT_3442 0.10 -1.1
113,001 - EX28DRAFT_3442 0.13 -0.9
113,152 + EX28DRAFT_3442 0.18 -0.2
113,253 + EX28DRAFT_3442 0.22 +0.1
113,254 - EX28DRAFT_3442 0.22 +0.3
113,548 + EX28DRAFT_3442 0.33 -0.2
113,549 - EX28DRAFT_3442 0.33 -0.2
113,710 + EX28DRAFT_3442 0.39 -1.4
114,110 + EX28DRAFT_3442 0.54 -0.2
114,110 + EX28DRAFT_3442 0.54 -0.1
114,282 - EX28DRAFT_3442 0.60 -0.9
114,282 - EX28DRAFT_3442 0.60 +1.7
114,282 - EX28DRAFT_3442 0.60 +0.9
114,350 - EX28DRAFT_3442 0.63 +0.4
114,352 + EX28DRAFT_3442 0.63 +0.2
114,399 + EX28DRAFT_3442 0.64 -1.8
114,399 + EX28DRAFT_3442 0.64 -2.3
114,399 + EX28DRAFT_3442 0.64 +0.2
114,400 - EX28DRAFT_3442 0.65 +0.1
114,675 + EX28DRAFT_3442 0.75 -0.1
114,756 - EX28DRAFT_3442 0.78 -0.1
114,873 - EX28DRAFT_3442 0.82 +0.6
114,873 - EX28DRAFT_3442 0.82 -0.5
114,873 - EX28DRAFT_3442 0.82 -1.1
114,967 + EX28DRAFT_3442 0.85 -0.4
114,967 + EX28DRAFT_3442 0.85 +0.4
114,968 - EX28DRAFT_3442 0.85 +0.2
114,988 + EX28DRAFT_3442 0.86 +0.4
114,988 + EX28DRAFT_3442 0.86 -0.1
114,989 - EX28DRAFT_3442 0.86 -0.3
114,989 - EX28DRAFT_3442 0.86 +0.2
115,120 + +0.7
115,120 + +0.1
115,120 + -0.8
115,121 - +0.0
115,238 + +0.1
115,268 + -0.3
115,268 + +0.1
115,301 + +0.3
115,302 - -0.5
115,544 - +0.1
115,559 + +0.1
115,895 + EX28DRAFT_3443 0.14 -0.0
115,895 + EX28DRAFT_3443 0.14 -0.2
115,927 + EX28DRAFT_3443 0.15 -2.1
115,967 + EX28DRAFT_3443 0.17 +0.0
116,203 + EX28DRAFT_3443 0.26 -0.2
116,203 + EX28DRAFT_3443 0.26 -0.2
116,238 - EX28DRAFT_3443 0.28 -0.1

Or see this region's nucleotide sequence