Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3431

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3430 and EX28DRAFT_3431 overlap by 4 nucleotidesEX28DRAFT_3431 and EX28DRAFT_3432 are separated by 83 nucleotides EX28DRAFT_3430: EX28DRAFT_3430 - uncharacterized pyridoxal phosphate-dependent enzyme, at 99,394 to 100,512 _3430 EX28DRAFT_3431: EX28DRAFT_3431 - conserved hypothetical protein EF_0839/AHA_3917, at 100,509 to 101,249 _3431 EX28DRAFT_3432: EX28DRAFT_3432 - 3-carboxymuconate cyclase, at 101,333 to 102,469 _3432 Position (kb) 100 101 102Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 99.559 kb on + strand, within EX28DRAFT_3430at 99.559 kb on + strand, within EX28DRAFT_3430at 99.559 kb on + strand, within EX28DRAFT_3430at 99.560 kb on - strand, within EX28DRAFT_3430at 100.015 kb on + strand, within EX28DRAFT_3430at 100.015 kb on + strand, within EX28DRAFT_3430at 100.016 kb on - strand, within EX28DRAFT_3430at 100.075 kb on + strand, within EX28DRAFT_3430at 100.171 kb on + strand, within EX28DRAFT_3430at 100.172 kb on - strand, within EX28DRAFT_3430at 100.378 kb on + strand, within EX28DRAFT_3430at 100.387 kb on + strand, within EX28DRAFT_3430at 100.388 kb on - strand, within EX28DRAFT_3430at 100.388 kb on - strand, within EX28DRAFT_3430at 100.399 kb on + strand, within EX28DRAFT_3430at 100.490 kb on + strandat 100.677 kb on + strand, within EX28DRAFT_3431at 100.678 kb on - strand, within EX28DRAFT_3431at 100.743 kb on - strand, within EX28DRAFT_3431at 100.989 kb on + strand, within EX28DRAFT_3431at 100.990 kb on - strand, within EX28DRAFT_3431at 100.990 kb on - strand, within EX28DRAFT_3431at 101.101 kb on - strand, within EX28DRAFT_3431at 101.157 kb on - strand, within EX28DRAFT_3431at 101.160 kb on + strand, within EX28DRAFT_3431at 101.160 kb on + strand, within EX28DRAFT_3431at 101.160 kb on + strand, within EX28DRAFT_3431at 101.161 kb on - strand, within EX28DRAFT_3431at 101.161 kb on - strand, within EX28DRAFT_3431at 101.161 kb on - strand, within EX28DRAFT_3431at 101.214 kb on - strandat 101.214 kb on - strandat 101.247 kb on + strandat 101.247 kb on + strandat 101.247 kb on + strandat 101.248 kb on - strandat 101.248 kb on - strandat 101.250 kb on + strandat 101.420 kb on + strandat 101.420 kb on + strandat 101.421 kb on - strandat 101.421 kb on - strandat 101.421 kb on - strandat 101.486 kb on - strand, within EX28DRAFT_3432at 101.552 kb on + strand, within EX28DRAFT_3432at 101.660 kb on + strand, within EX28DRAFT_3432at 101.691 kb on + strand, within EX28DRAFT_3432at 101.691 kb on + strand, within EX28DRAFT_3432at 101.691 kb on + strand, within EX28DRAFT_3432at 101.692 kb on - strand, within EX28DRAFT_3432at 101.705 kb on + strand, within EX28DRAFT_3432at 101.705 kb on + strand, within EX28DRAFT_3432at 101.705 kb on + strand, within EX28DRAFT_3432at 101.706 kb on - strand, within EX28DRAFT_3432at 101.737 kb on + strand, within EX28DRAFT_3432at 101.894 kb on + strand, within EX28DRAFT_3432at 101.931 kb on - strand, within EX28DRAFT_3432at 102.077 kb on - strand, within EX28DRAFT_3432at 102.091 kb on + strand, within EX28DRAFT_3432at 102.115 kb on - strand, within EX28DRAFT_3432at 102.209 kb on + strand, within EX28DRAFT_3432at 102.209 kb on + strand, within EX28DRAFT_3432at 102.209 kb on + strand, within EX28DRAFT_3432at 102.209 kb on + strand, within EX28DRAFT_3432at 102.210 kb on - strand, within EX28DRAFT_3432at 102.210 kb on - strand, within EX28DRAFT_3432at 102.210 kb on - strand, within EX28DRAFT_3432at 102.210 kb on - strand, within EX28DRAFT_3432

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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99,559 + EX28DRAFT_3430 0.15 +0.1
99,559 + EX28DRAFT_3430 0.15 +0.3
99,559 + EX28DRAFT_3430 0.15 +0.2
99,560 - EX28DRAFT_3430 0.15 -0.8
100,015 + EX28DRAFT_3430 0.55 +0.3
100,015 + EX28DRAFT_3430 0.55 +0.3
100,016 - EX28DRAFT_3430 0.56 -0.1
100,075 + EX28DRAFT_3430 0.61 -0.2
100,171 + EX28DRAFT_3430 0.69 +0.2
100,172 - EX28DRAFT_3430 0.70 +0.8
100,378 + EX28DRAFT_3430 0.88 -1.0
100,387 + EX28DRAFT_3430 0.89 -0.4
100,388 - EX28DRAFT_3430 0.89 +0.3
100,388 - EX28DRAFT_3430 0.89 -0.2
100,399 + EX28DRAFT_3430 0.90 +0.3
100,490 + -0.8
100,677 + EX28DRAFT_3431 0.23 +0.1
100,678 - EX28DRAFT_3431 0.23 +0.9
100,743 - EX28DRAFT_3431 0.32 -3.0
100,989 + EX28DRAFT_3431 0.65 +0.4
100,990 - EX28DRAFT_3431 0.65 -0.3
100,990 - EX28DRAFT_3431 0.65 -1.1
101,101 - EX28DRAFT_3431 0.80 -0.3
101,157 - EX28DRAFT_3431 0.87 -0.6
101,160 + EX28DRAFT_3431 0.88 +0.0
101,160 + EX28DRAFT_3431 0.88 -0.6
101,160 + EX28DRAFT_3431 0.88 +0.4
101,161 - EX28DRAFT_3431 0.88 +0.4
101,161 - EX28DRAFT_3431 0.88 -0.2
101,161 - EX28DRAFT_3431 0.88 -0.1
101,214 - -0.2
101,214 - -0.0
101,247 + +0.3
101,247 + +0.4
101,247 + -0.6
101,248 - -1.0
101,248 - +0.1
101,250 + +0.5
101,420 + -0.2
101,420 + -1.0
101,421 - -0.8
101,421 - -0.0
101,421 - +1.3
101,486 - EX28DRAFT_3432 0.13 -1.9
101,552 + EX28DRAFT_3432 0.19 +0.2
101,660 + EX28DRAFT_3432 0.29 +0.0
101,691 + EX28DRAFT_3432 0.31 -0.2
101,691 + EX28DRAFT_3432 0.31 +0.2
101,691 + EX28DRAFT_3432 0.31 -0.1
101,692 - EX28DRAFT_3432 0.32 +0.3
101,705 + EX28DRAFT_3432 0.33 -0.4
101,705 + EX28DRAFT_3432 0.33 -0.1
101,705 + EX28DRAFT_3432 0.33 -0.2
101,706 - EX28DRAFT_3432 0.33 -0.6
101,737 + EX28DRAFT_3432 0.36 +1.8
101,894 + EX28DRAFT_3432 0.49 +0.2
101,931 - EX28DRAFT_3432 0.53 -0.3
102,077 - EX28DRAFT_3432 0.65 -0.3
102,091 + EX28DRAFT_3432 0.67 -0.5
102,115 - EX28DRAFT_3432 0.69 -1.6
102,209 + EX28DRAFT_3432 0.77 -0.0
102,209 + EX28DRAFT_3432 0.77 +1.7
102,209 + EX28DRAFT_3432 0.77 +0.0
102,209 + EX28DRAFT_3432 0.77 -0.8
102,210 - EX28DRAFT_3432 0.77 -0.2
102,210 - EX28DRAFT_3432 0.77 -0.4
102,210 - EX28DRAFT_3432 0.77 +0.4
102,210 - EX28DRAFT_3432 0.77 +0.0

Or see this region's nucleotide sequence