Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3106 and EX28DRAFT_3107 overlap by 4 nucleotides EX28DRAFT_3107 and EX28DRAFT_3108 are separated by 11 nucleotides EX28DRAFT_3108 and EX28DRAFT_3109 are separated by 144 nucleotides EX28DRAFT_3109 and EX28DRAFT_3110 are separated by 56 nucleotides
EX28DRAFT_3106: EX28DRAFT_3106 - Phage protein D, at 415,028 to 416,182
_3106
EX28DRAFT_3107: EX28DRAFT_3107 - Phage protein U, at 416,179 to 416,643
_3107
EX28DRAFT_3108: EX28DRAFT_3108 - phage tail tape measure protein, TP901 family, core region, at 416,655 to 418,934
_3108
EX28DRAFT_3109: EX28DRAFT_3109 - Mu-like prophage FluMu protein gp41, at 419,079 to 419,387
_3109
EX28DRAFT_3110: EX28DRAFT_3110 - phage contractile tail tube protein, P2 family, at 419,444 to 419,962
_3110
Position (kb) 416
417
418
419 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 415.664 kb on - strand, within EX28DRAFT_3106 at 415.718 kb on - strand, within EX28DRAFT_3106 at 415.921 kb on + strand, within EX28DRAFT_3106 at 415.921 kb on + strand, within EX28DRAFT_3106 at 416.030 kb on - strand, within EX28DRAFT_3106 at 416.081 kb on - strand at 416.125 kb on + strand at 416.126 kb on - strand at 416.132 kb on - strand at 416.132 kb on - strand at 416.284 kb on - strand, within EX28DRAFT_3107 at 416.295 kb on + strand, within EX28DRAFT_3107 at 416.301 kb on + strand, within EX28DRAFT_3107 at 416.317 kb on - strand, within EX28DRAFT_3107 at 416.364 kb on + strand, within EX28DRAFT_3107 at 416.365 kb on - strand, within EX28DRAFT_3107 at 416.396 kb on - strand, within EX28DRAFT_3107 at 416.480 kb on - strand, within EX28DRAFT_3107 at 416.480 kb on - strand, within EX28DRAFT_3107 at 416.480 kb on - strand, within EX28DRAFT_3107 at 416.493 kb on + strand, within EX28DRAFT_3107 at 416.520 kb on - strand, within EX28DRAFT_3107 at 416.594 kb on + strand, within EX28DRAFT_3107 at 416.660 kb on + strand at 416.661 kb on - strand at 416.661 kb on - strand at 416.661 kb on - strand at 416.662 kb on + strand at 416.662 kb on + strand at 416.662 kb on + strand at 416.662 kb on + strand at 416.662 kb on + strand at 416.663 kb on - strand at 416.663 kb on - strand at 416.663 kb on - strand at 416.663 kb on - strand at 416.666 kb on + strand at 416.666 kb on + strand at 416.666 kb on + strand at 416.666 kb on + strand at 416.666 kb on + strand at 416.667 kb on - strand at 416.705 kb on + strand at 416.706 kb on - strand at 416.708 kb on + strand at 416.708 kb on + strand at 416.708 kb on + strand at 416.708 kb on + strand at 416.708 kb on + strand at 416.709 kb on - strand at 416.709 kb on - strand at 416.709 kb on - strand at 416.777 kb on + strand at 416.778 kb on - strand at 416.780 kb on - strand at 416.803 kb on + strand at 416.803 kb on + strand at 416.874 kb on - strand at 416.875 kb on + strand at 416.876 kb on - strand at 416.876 kb on - strand at 416.954 kb on + strand, within EX28DRAFT_3108 at 416.999 kb on + strand, within EX28DRAFT_3108 at 416.999 kb on + strand, within EX28DRAFT_3108 at 417.000 kb on - strand, within EX28DRAFT_3108 at 417.152 kb on + strand, within EX28DRAFT_3108 at 417.153 kb on - strand, within EX28DRAFT_3108 at 417.153 kb on - strand, within EX28DRAFT_3108 at 417.260 kb on - strand, within EX28DRAFT_3108 at 417.438 kb on + strand, within EX28DRAFT_3108 at 417.450 kb on + strand, within EX28DRAFT_3108 at 417.562 kb on - strand, within EX28DRAFT_3108 at 417.771 kb on + strand, within EX28DRAFT_3108 at 417.953 kb on + strand, within EX28DRAFT_3108 at 417.953 kb on + strand, within EX28DRAFT_3108 at 417.965 kb on + strand, within EX28DRAFT_3108 at 417.966 kb on - strand, within EX28DRAFT_3108 at 418.020 kb on - strand, within EX28DRAFT_3108 at 418.020 kb on - strand, within EX28DRAFT_3108 at 418.021 kb on + strand, within EX28DRAFT_3108 at 418.059 kb on - strand, within EX28DRAFT_3108 at 418.133 kb on - strand, within EX28DRAFT_3108 at 418.310 kb on + strand, within EX28DRAFT_3108 at 418.593 kb on + strand, within EX28DRAFT_3108 at 418.594 kb on - strand, within EX28DRAFT_3108 at 418.604 kb on - strand, within EX28DRAFT_3108 at 418.613 kb on + strand, within EX28DRAFT_3108 at 418.686 kb on - strand, within EX28DRAFT_3108 at 418.925 kb on + strand at 418.925 kb on + strand at 418.925 kb on + strand at 418.926 kb on - strand at 418.926 kb on - strand at 418.928 kb on + strand at 418.973 kb on - strand at 419.000 kb on + strand at 419.117 kb on + strand, within EX28DRAFT_3109 at 419.339 kb on + strand, within EX28DRAFT_3109 at 419.339 kb on + strand, within EX28DRAFT_3109 at 419.339 kb on + strand, within EX28DRAFT_3109 at 419.379 kb on - strand at 419.379 kb on - strand at 419.851 kb on - strand, within EX28DRAFT_3110 at 419.851 kb on - strand, within EX28DRAFT_3110 at 419.907 kb on + strand, within EX28DRAFT_3110 at 419.907 kb on + strand, within EX28DRAFT_3110 at 419.908 kb on - strand, within EX28DRAFT_3110 at 419.908 kb on - strand, within EX28DRAFT_3110 at 419.908 kb on - strand, within EX28DRAFT_3110
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 415,664 - EX28DRAFT_3106 0.55 +0.5 415,718 - EX28DRAFT_3106 0.60 +0.6 415,921 + EX28DRAFT_3106 0.77 +0.1 415,921 + EX28DRAFT_3106 0.77 -0.3 416,030 - EX28DRAFT_3106 0.87 -0.4 416,081 - +0.6 416,125 + +0.3 416,126 - +0.8 416,132 - -0.7 416,132 - +0.3 416,284 - EX28DRAFT_3107 0.23 -0.4 416,295 + EX28DRAFT_3107 0.25 +0.3 416,301 + EX28DRAFT_3107 0.26 +0.6 416,317 - EX28DRAFT_3107 0.30 +0.2 416,364 + EX28DRAFT_3107 0.40 +0.2 416,365 - EX28DRAFT_3107 0.40 -0.5 416,396 - EX28DRAFT_3107 0.47 -1.6 416,480 - EX28DRAFT_3107 0.65 -0.0 416,480 - EX28DRAFT_3107 0.65 -0.3 416,480 - EX28DRAFT_3107 0.65 -1.8 416,493 + EX28DRAFT_3107 0.68 +0.5 416,520 - EX28DRAFT_3107 0.73 -1.1 416,594 + EX28DRAFT_3107 0.89 -0.2 416,660 + +0.2 416,661 - +0.4 416,661 - -0.4 416,661 - -0.1 416,662 + +0.6 416,662 + -0.6 416,662 + -0.3 416,662 + -1.3 416,662 + +0.8 416,663 - +0.3 416,663 - -0.3 416,663 - -1.0 416,663 - -0.2 416,666 + +0.0 416,666 + -0.2 416,666 + -1.7 416,666 + +0.5 416,666 + +0.7 416,667 - -0.1 416,705 + -0.1 416,706 - -0.2 416,708 + +0.1 416,708 + +0.2 416,708 + +0.2 416,708 + -0.9 416,708 + -0.2 416,709 - +1.3 416,709 - -0.5 416,709 - +0.2 416,777 + -2.4 416,778 - +0.6 416,780 - +0.5 416,803 + +0.4 416,803 + -0.4 416,874 - +1.4 416,875 + +0.0 416,876 - -0.3 416,876 - +0.8 416,954 + EX28DRAFT_3108 0.13 -0.4 416,999 + EX28DRAFT_3108 0.15 +0.3 416,999 + EX28DRAFT_3108 0.15 +0.2 417,000 - EX28DRAFT_3108 0.15 +0.5 417,152 + EX28DRAFT_3108 0.22 -0.7 417,153 - EX28DRAFT_3108 0.22 +0.1 417,153 - EX28DRAFT_3108 0.22 -0.2 417,260 - EX28DRAFT_3108 0.27 -0.8 417,438 + EX28DRAFT_3108 0.34 -0.7 417,450 + EX28DRAFT_3108 0.35 -0.6 417,562 - EX28DRAFT_3108 0.40 -0.1 417,771 + EX28DRAFT_3108 0.49 +0.1 417,953 + EX28DRAFT_3108 0.57 -0.0 417,953 + EX28DRAFT_3108 0.57 -0.1 417,965 + EX28DRAFT_3108 0.57 -2.3 417,966 - EX28DRAFT_3108 0.57 -0.2 418,020 - EX28DRAFT_3108 0.60 +0.2 418,020 - EX28DRAFT_3108 0.60 -0.3 418,021 + EX28DRAFT_3108 0.60 -0.2 418,059 - EX28DRAFT_3108 0.62 -3.2 418,133 - EX28DRAFT_3108 0.65 -0.9 418,310 + EX28DRAFT_3108 0.73 -0.9 418,593 + EX28DRAFT_3108 0.85 -1.3 418,594 - EX28DRAFT_3108 0.85 +0.1 418,604 - EX28DRAFT_3108 0.85 +0.3 418,613 + EX28DRAFT_3108 0.86 -0.3 418,686 - EX28DRAFT_3108 0.89 -0.7 418,925 + -0.4 418,925 + -0.2 418,925 + +0.3 418,926 - +0.3 418,926 - -0.4 418,928 + -0.1 418,973 - +0.4 419,000 + +0.1 419,117 + EX28DRAFT_3109 0.12 +0.3 419,339 + EX28DRAFT_3109 0.84 -1.3 419,339 + EX28DRAFT_3109 0.84 -0.4 419,339 + EX28DRAFT_3109 0.84 -0.5 419,379 - -0.1 419,379 - -0.6 419,851 - EX28DRAFT_3110 0.78 -0.7 419,851 - EX28DRAFT_3110 0.78 +0.3 419,907 + EX28DRAFT_3110 0.89 -0.1 419,907 + EX28DRAFT_3110 0.89 -0.3 419,908 - EX28DRAFT_3110 0.89 +1.5 419,908 - EX28DRAFT_3110 0.89 -0.7 419,908 - EX28DRAFT_3110 0.89 -1.2
Or see this region's nucleotide sequence