Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3075

Experiment: M9 with sucrose; no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3073 and EX28DRAFT_3074 are separated by 190 nucleotidesEX28DRAFT_3074 and EX28DRAFT_3075 are separated by 2 nucleotidesEX28DRAFT_3075 and EX28DRAFT_3076 are separated by 96 nucleotides EX28DRAFT_3073: EX28DRAFT_3073 - type I secretion outer membrane protein, TolC family, at 383,064 to 384,542 _3073 EX28DRAFT_3074: EX28DRAFT_3074 - Predicted integral membrane protein, at 384,733 to 385,401 _3074 EX28DRAFT_3075: EX28DRAFT_3075 - Glutathionylspermidine synthase, at 385,404 to 386,564 _3075 EX28DRAFT_3076: EX28DRAFT_3076 - Uncharacterized conserved protein, at 386,661 to 387,449 _3076 Position (kb) 385 386 387Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 384.444 kb on + strandat 384.447 kb on - strandat 384.525 kb on - strandat 384.537 kb on - strandat 384.540 kb on + strandat 384.639 kb on + strandat 384.639 kb on + strandat 384.705 kb on + strandat 384.750 kb on + strandat 384.829 kb on - strand, within EX28DRAFT_3074at 384.829 kb on - strand, within EX28DRAFT_3074at 384.829 kb on - strand, within EX28DRAFT_3074at 384.961 kb on - strand, within EX28DRAFT_3074at 384.961 kb on - strand, within EX28DRAFT_3074at 384.973 kb on + strand, within EX28DRAFT_3074at 384.973 kb on + strand, within EX28DRAFT_3074at 385.111 kb on + strand, within EX28DRAFT_3074at 385.112 kb on - strand, within EX28DRAFT_3074at 385.205 kb on - strand, within EX28DRAFT_3074at 385.206 kb on + strand, within EX28DRAFT_3074at 385.207 kb on - strand, within EX28DRAFT_3074at 385.466 kb on + strandat 385.482 kb on + strandat 385.515 kb on + strandat 385.515 kb on + strandat 385.515 kb on + strandat 385.516 kb on - strandat 385.516 kb on - strandat 385.695 kb on + strand, within EX28DRAFT_3075at 385.696 kb on - strand, within EX28DRAFT_3075at 385.751 kb on + strand, within EX28DRAFT_3075at 385.974 kb on + strand, within EX28DRAFT_3075at 386.022 kb on + strand, within EX28DRAFT_3075at 386.116 kb on - strand, within EX28DRAFT_3075at 386.116 kb on - strand, within EX28DRAFT_3075at 386.116 kb on - strand, within EX28DRAFT_3075at 386.116 kb on - strand, within EX28DRAFT_3075at 386.198 kb on + strand, within EX28DRAFT_3075at 386.262 kb on + strand, within EX28DRAFT_3075at 386.298 kb on + strand, within EX28DRAFT_3075at 386.299 kb on - strand, within EX28DRAFT_3075at 386.299 kb on - strand, within EX28DRAFT_3075at 386.299 kb on - strand, within EX28DRAFT_3075at 386.299 kb on - strand, within EX28DRAFT_3075at 386.418 kb on + strand, within EX28DRAFT_3075at 386.419 kb on - strand, within EX28DRAFT_3075at 386.445 kb on + strand, within EX28DRAFT_3075at 386.445 kb on + strand, within EX28DRAFT_3075at 386.445 kb on + strand, within EX28DRAFT_3075at 386.445 kb on + strand, within EX28DRAFT_3075at 386.445 kb on + strand, within EX28DRAFT_3075at 386.445 kb on + strand, within EX28DRAFT_3075at 386.445 kb on + strand, within EX28DRAFT_3075at 386.446 kb on - strand, within EX28DRAFT_3075at 386.446 kb on - strand, within EX28DRAFT_3075at 386.447 kb on + strand, within EX28DRAFT_3075at 386.447 kb on + strand, within EX28DRAFT_3075at 386.448 kb on - strand, within EX28DRAFT_3075at 386.659 kb on + strandat 386.660 kb on - strandat 386.684 kb on + strandat 386.684 kb on + strandat 386.758 kb on + strand, within EX28DRAFT_3076at 386.759 kb on - strand, within EX28DRAFT_3076at 386.821 kb on + strand, within EX28DRAFT_3076at 386.821 kb on + strand, within EX28DRAFT_3076at 386.821 kb on + strand, within EX28DRAFT_3076at 386.822 kb on - strand, within EX28DRAFT_3076at 386.822 kb on - strand, within EX28DRAFT_3076at 386.822 kb on - strand, within EX28DRAFT_3076at 386.879 kb on - strand, within EX28DRAFT_3076at 387.005 kb on + strand, within EX28DRAFT_3076at 387.006 kb on - strand, within EX28DRAFT_3076at 387.086 kb on - strand, within EX28DRAFT_3076at 387.092 kb on + strand, within EX28DRAFT_3076at 387.171 kb on + strand, within EX28DRAFT_3076at 387.402 kb on - strandat 387.462 kb on - strandat 387.462 kb on - strandat 387.478 kb on + strandat 387.487 kb on + strandat 387.487 kb on + strandat 387.488 kb on - strandat 387.488 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
remove
384,444 + +0.2
384,447 - +0.9
384,525 - -0.1
384,537 - +0.1
384,540 + +1.2
384,639 + +0.4
384,639 + +0.3
384,705 + +0.1
384,750 + -1.0
384,829 - EX28DRAFT_3074 0.14 +0.2
384,829 - EX28DRAFT_3074 0.14 -2.1
384,829 - EX28DRAFT_3074 0.14 +0.5
384,961 - EX28DRAFT_3074 0.34 +0.4
384,961 - EX28DRAFT_3074 0.34 +2.8
384,973 + EX28DRAFT_3074 0.36 +1.5
384,973 + EX28DRAFT_3074 0.36 +0.4
385,111 + EX28DRAFT_3074 0.57 +0.3
385,112 - EX28DRAFT_3074 0.57 +0.0
385,205 - EX28DRAFT_3074 0.71 +0.4
385,206 + EX28DRAFT_3074 0.71 +0.2
385,207 - EX28DRAFT_3074 0.71 +0.1
385,466 + -0.9
385,482 + -0.8
385,515 + +0.5
385,515 + -0.2
385,515 + -0.4
385,516 - +0.5
385,516 - -0.5
385,695 + EX28DRAFT_3075 0.25 -0.3
385,696 - EX28DRAFT_3075 0.25 +1.8
385,751 + EX28DRAFT_3075 0.30 +0.1
385,974 + EX28DRAFT_3075 0.49 +0.2
386,022 + EX28DRAFT_3075 0.53 -1.0
386,116 - EX28DRAFT_3075 0.61 +0.6
386,116 - EX28DRAFT_3075 0.61 +0.2
386,116 - EX28DRAFT_3075 0.61 -3.3
386,116 - EX28DRAFT_3075 0.61 -0.1
386,198 + EX28DRAFT_3075 0.68 +0.1
386,262 + EX28DRAFT_3075 0.74 +0.0
386,298 + EX28DRAFT_3075 0.77 -0.5
386,299 - EX28DRAFT_3075 0.77 +0.1
386,299 - EX28DRAFT_3075 0.77 +0.4
386,299 - EX28DRAFT_3075 0.77 +0.2
386,299 - EX28DRAFT_3075 0.77 +0.0
386,418 + EX28DRAFT_3075 0.87 +0.0
386,419 - EX28DRAFT_3075 0.87 +0.2
386,445 + EX28DRAFT_3075 0.90 -0.2
386,445 + EX28DRAFT_3075 0.90 -0.5
386,445 + EX28DRAFT_3075 0.90 -0.5
386,445 + EX28DRAFT_3075 0.90 +1.8
386,445 + EX28DRAFT_3075 0.90 +0.2
386,445 + EX28DRAFT_3075 0.90 +0.7
386,445 + EX28DRAFT_3075 0.90 -0.0
386,446 - EX28DRAFT_3075 0.90 +0.0
386,446 - EX28DRAFT_3075 0.90 +0.2
386,447 + EX28DRAFT_3075 0.90 -1.0
386,447 + EX28DRAFT_3075 0.90 -0.2
386,448 - EX28DRAFT_3075 0.90 -0.6
386,659 + +0.7
386,660 - -1.3
386,684 + -1.6
386,684 + -1.9
386,758 + EX28DRAFT_3076 0.12 +0.3
386,759 - EX28DRAFT_3076 0.12 +0.8
386,821 + EX28DRAFT_3076 0.20 +0.2
386,821 + EX28DRAFT_3076 0.20 +1.1
386,821 + EX28DRAFT_3076 0.20 +0.2
386,822 - EX28DRAFT_3076 0.20 -0.6
386,822 - EX28DRAFT_3076 0.20 +0.6
386,822 - EX28DRAFT_3076 0.20 +0.7
386,879 - EX28DRAFT_3076 0.28 +0.2
387,005 + EX28DRAFT_3076 0.44 -0.5
387,006 - EX28DRAFT_3076 0.44 +0.2
387,086 - EX28DRAFT_3076 0.54 +0.2
387,092 + EX28DRAFT_3076 0.55 +0.6
387,171 + EX28DRAFT_3076 0.65 +0.6
387,402 - +0.4
387,462 - +0.4
387,462 - -0.0
387,478 + -0.2
387,487 + -1.0
387,487 + +0.7
387,488 - +2.5
387,488 - +2.3

Or see this region's nucleotide sequence