Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3051

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3050 and EX28DRAFT_3051 are separated by 83 nucleotidesEX28DRAFT_3051 and EX28DRAFT_3052 are separated by 199 nucleotides EX28DRAFT_3050: EX28DRAFT_3050 - Aldo/keto reductases, related to diketogulonate reductase, at 357,452 to 358,279 _3050 EX28DRAFT_3051: EX28DRAFT_3051 - uncharacterized radical SAM protein YgiQ, at 358,363 to 360,534 _3051 EX28DRAFT_3052: EX28DRAFT_3052 - potassium uptake protein, TrkH family, at 360,734 to 362,209 _3052 Position (kb) 358 359 360 361Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 357.394 kb on + strandat 357.395 kb on - strandat 357.511 kb on - strandat 357.517 kb on - strandat 357.556 kb on + strand, within EX28DRAFT_3050at 357.663 kb on + strand, within EX28DRAFT_3050at 357.663 kb on + strand, within EX28DRAFT_3050at 357.664 kb on - strand, within EX28DRAFT_3050at 357.664 kb on - strand, within EX28DRAFT_3050at 357.664 kb on - strand, within EX28DRAFT_3050at 357.797 kb on + strand, within EX28DRAFT_3050at 357.866 kb on - strand, within EX28DRAFT_3050at 357.866 kb on - strand, within EX28DRAFT_3050at 357.988 kb on + strand, within EX28DRAFT_3050at 357.989 kb on - strand, within EX28DRAFT_3050at 358.072 kb on + strand, within EX28DRAFT_3050at 358.072 kb on + strand, within EX28DRAFT_3050at 358.077 kb on - strand, within EX28DRAFT_3050at 358.077 kb on - strand, within EX28DRAFT_3050at 358.277 kb on + strandat 358.277 kb on + strandat 358.286 kb on - strandat 358.321 kb on + strandat 358.322 kb on - strandat 358.665 kb on + strand, within EX28DRAFT_3051at 358.666 kb on - strand, within EX28DRAFT_3051at 358.668 kb on - strand, within EX28DRAFT_3051at 358.700 kb on + strand, within EX28DRAFT_3051at 358.700 kb on + strand, within EX28DRAFT_3051at 358.700 kb on + strand, within EX28DRAFT_3051at 358.701 kb on - strand, within EX28DRAFT_3051at 358.703 kb on + strand, within EX28DRAFT_3051at 358.703 kb on + strand, within EX28DRAFT_3051at 358.703 kb on + strand, within EX28DRAFT_3051at 358.703 kb on + strand, within EX28DRAFT_3051at 358.703 kb on + strand, within EX28DRAFT_3051at 358.704 kb on - strand, within EX28DRAFT_3051at 358.704 kb on - strand, within EX28DRAFT_3051at 358.736 kb on + strand, within EX28DRAFT_3051at 358.838 kb on + strand, within EX28DRAFT_3051at 358.839 kb on - strand, within EX28DRAFT_3051at 358.850 kb on + strand, within EX28DRAFT_3051at 358.850 kb on + strand, within EX28DRAFT_3051at 358.851 kb on - strand, within EX28DRAFT_3051at 358.851 kb on - strand, within EX28DRAFT_3051at 358.851 kb on - strand, within EX28DRAFT_3051at 358.877 kb on + strand, within EX28DRAFT_3051at 358.908 kb on - strand, within EX28DRAFT_3051at 359.043 kb on - strand, within EX28DRAFT_3051at 359.048 kb on - strand, within EX28DRAFT_3051at 359.216 kb on + strand, within EX28DRAFT_3051at 359.216 kb on + strand, within EX28DRAFT_3051at 359.216 kb on + strand, within EX28DRAFT_3051at 359.216 kb on + strand, within EX28DRAFT_3051at 359.216 kb on + strand, within EX28DRAFT_3051at 359.216 kb on + strand, within EX28DRAFT_3051at 359.216 kb on + strand, within EX28DRAFT_3051at 359.216 kb on + strand, within EX28DRAFT_3051at 359.216 kb on + strand, within EX28DRAFT_3051at 359.216 kb on + strand, within EX28DRAFT_3051at 359.217 kb on - strand, within EX28DRAFT_3051at 359.217 kb on - strand, within EX28DRAFT_3051at 359.217 kb on - strand, within EX28DRAFT_3051at 359.332 kb on - strand, within EX28DRAFT_3051at 359.332 kb on - strand, within EX28DRAFT_3051at 359.418 kb on - strand, within EX28DRAFT_3051at 359.645 kb on + strand, within EX28DRAFT_3051at 359.663 kb on + strand, within EX28DRAFT_3051at 359.805 kb on + strand, within EX28DRAFT_3051at 359.954 kb on + strand, within EX28DRAFT_3051at 359.954 kb on + strand, within EX28DRAFT_3051at 359.954 kb on + strand, within EX28DRAFT_3051at 359.998 kb on + strand, within EX28DRAFT_3051at 359.998 kb on + strand, within EX28DRAFT_3051at 360.003 kb on + strand, within EX28DRAFT_3051at 360.004 kb on - strand, within EX28DRAFT_3051at 360.004 kb on - strand, within EX28DRAFT_3051at 360.156 kb on - strand, within EX28DRAFT_3051at 360.189 kb on + strand, within EX28DRAFT_3051at 360.192 kb on - strand, within EX28DRAFT_3051at 360.261 kb on + strand, within EX28DRAFT_3051at 360.262 kb on - strand, within EX28DRAFT_3051at 360.330 kb on + strandat 360.371 kb on + strandat 360.534 kb on + strandat 360.535 kb on - strandat 360.575 kb on + strandat 360.575 kb on + strandat 360.575 kb on + strandat 360.627 kb on - strandat 360.627 kb on - strandat 360.673 kb on + strandat 360.674 kb on - strandat 360.674 kb on - strandat 360.676 kb on + strandat 360.683 kb on + strandat 360.684 kb on - strandat 360.685 kb on + strandat 360.685 kb on + strandat 360.754 kb on - strandat 360.754 kb on - strandat 360.759 kb on + strandat 360.866 kb on + strandat 360.866 kb on + strandat 360.867 kb on - strandat 360.867 kb on - strandat 360.976 kb on + strand, within EX28DRAFT_3052at 361.042 kb on - strand, within EX28DRAFT_3052at 361.146 kb on - strand, within EX28DRAFT_3052at 361.146 kb on - strand, within EX28DRAFT_3052at 361.325 kb on + strand, within EX28DRAFT_3052at 361.458 kb on - strand, within EX28DRAFT_3052

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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357,394 + -0.7
357,395 - +0.1
357,511 - -0.2
357,517 - -0.9
357,556 + EX28DRAFT_3050 0.13 -0.3
357,663 + EX28DRAFT_3050 0.25 -0.2
357,663 + EX28DRAFT_3050 0.25 +0.2
357,664 - EX28DRAFT_3050 0.26 -0.2
357,664 - EX28DRAFT_3050 0.26 -0.1
357,664 - EX28DRAFT_3050 0.26 -0.2
357,797 + EX28DRAFT_3050 0.42 +0.4
357,866 - EX28DRAFT_3050 0.50 -0.7
357,866 - EX28DRAFT_3050 0.50 -0.3
357,988 + EX28DRAFT_3050 0.65 +0.2
357,989 - EX28DRAFT_3050 0.65 +0.7
358,072 + EX28DRAFT_3050 0.75 +0.6
358,072 + EX28DRAFT_3050 0.75 -0.5
358,077 - EX28DRAFT_3050 0.75 -0.7
358,077 - EX28DRAFT_3050 0.75 +0.4
358,277 + -0.2
358,277 + -0.0
358,286 - +0.0
358,321 + +0.4
358,322 - -0.2
358,665 + EX28DRAFT_3051 0.14 -0.0
358,666 - EX28DRAFT_3051 0.14 -0.6
358,668 - EX28DRAFT_3051 0.14 +0.4
358,700 + EX28DRAFT_3051 0.16 +0.0
358,700 + EX28DRAFT_3051 0.16 +0.4
358,700 + EX28DRAFT_3051 0.16 -0.2
358,701 - EX28DRAFT_3051 0.16 -3.1
358,703 + EX28DRAFT_3051 0.16 -0.4
358,703 + EX28DRAFT_3051 0.16 +0.2
358,703 + EX28DRAFT_3051 0.16 +0.6
358,703 + EX28DRAFT_3051 0.16 +0.1
358,703 + EX28DRAFT_3051 0.16 +1.4
358,704 - EX28DRAFT_3051 0.16 +0.2
358,704 - EX28DRAFT_3051 0.16 +0.8
358,736 + EX28DRAFT_3051 0.17 +0.5
358,838 + EX28DRAFT_3051 0.22 -0.1
358,839 - EX28DRAFT_3051 0.22 +0.4
358,850 + EX28DRAFT_3051 0.22 +0.4
358,850 + EX28DRAFT_3051 0.22 +1.6
358,851 - EX28DRAFT_3051 0.22 +0.1
358,851 - EX28DRAFT_3051 0.22 +0.5
358,851 - EX28DRAFT_3051 0.22 -0.4
358,877 + EX28DRAFT_3051 0.24 -0.2
358,908 - EX28DRAFT_3051 0.25 -0.8
359,043 - EX28DRAFT_3051 0.31 -0.5
359,048 - EX28DRAFT_3051 0.32 -0.0
359,216 + EX28DRAFT_3051 0.39 +0.7
359,216 + EX28DRAFT_3051 0.39 -0.3
359,216 + EX28DRAFT_3051 0.39 -1.3
359,216 + EX28DRAFT_3051 0.39 -0.3
359,216 + EX28DRAFT_3051 0.39 +0.1
359,216 + EX28DRAFT_3051 0.39 -2.8
359,216 + EX28DRAFT_3051 0.39 +0.4
359,216 + EX28DRAFT_3051 0.39 -0.2
359,216 + EX28DRAFT_3051 0.39 -0.8
359,216 + EX28DRAFT_3051 0.39 -0.5
359,217 - EX28DRAFT_3051 0.39 -0.5
359,217 - EX28DRAFT_3051 0.39 +0.9
359,217 - EX28DRAFT_3051 0.39 +0.8
359,332 - EX28DRAFT_3051 0.45 -0.1
359,332 - EX28DRAFT_3051 0.45 -0.1
359,418 - EX28DRAFT_3051 0.49 -4.2
359,645 + EX28DRAFT_3051 0.59 +0.3
359,663 + EX28DRAFT_3051 0.60 +0.9
359,805 + EX28DRAFT_3051 0.66 -0.1
359,954 + EX28DRAFT_3051 0.73 +0.2
359,954 + EX28DRAFT_3051 0.73 -0.3
359,954 + EX28DRAFT_3051 0.73 +0.3
359,998 + EX28DRAFT_3051 0.75 +0.4
359,998 + EX28DRAFT_3051 0.75 -1.0
360,003 + EX28DRAFT_3051 0.76 +0.6
360,004 - EX28DRAFT_3051 0.76 +0.1
360,004 - EX28DRAFT_3051 0.76 +1.5
360,156 - EX28DRAFT_3051 0.83 +0.2
360,189 + EX28DRAFT_3051 0.84 +0.2
360,192 - EX28DRAFT_3051 0.84 +0.7
360,261 + EX28DRAFT_3051 0.87 -0.6
360,262 - EX28DRAFT_3051 0.87 -0.5
360,330 + +0.1
360,371 + +0.4
360,534 + +0.3
360,535 - -3.3
360,575 + +0.6
360,575 + +0.3
360,575 + -0.4
360,627 - +0.7
360,627 - -0.2
360,673 + -0.1
360,674 - -0.0
360,674 - +0.2
360,676 + -0.9
360,683 + -0.1
360,684 - +1.1
360,685 + -0.1
360,685 + -0.1
360,754 - +0.0
360,754 - +0.1
360,759 + -0.5
360,866 + -2.6
360,866 + +0.7
360,867 - +0.2
360,867 - -0.2
360,976 + EX28DRAFT_3052 0.16 -0.1
361,042 - EX28DRAFT_3052 0.21 +0.3
361,146 - EX28DRAFT_3052 0.28 +0.4
361,146 - EX28DRAFT_3052 0.28 -0.2
361,325 + EX28DRAFT_3052 0.40 -0.6
361,458 - EX28DRAFT_3052 0.49 +0.4

Or see this region's nucleotide sequence