Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2981

Experiment: M9 with sucrose; no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2980 and EX28DRAFT_2981 are separated by 359 nucleotidesEX28DRAFT_2981 and EX28DRAFT_2982 are separated by 58 nucleotidesEX28DRAFT_2982 and EX28DRAFT_2983 are separated by 94 nucleotides EX28DRAFT_2980: EX28DRAFT_2980 - methionine adenosyltransferase (EC 2.5.1.6), at 292,720 to 293,874 _2980 EX28DRAFT_2981: EX28DRAFT_2981 - MFS transporter, sugar porter (SP) family, at 294,234 to 295,631 _2981 EX28DRAFT_2982: EX28DRAFT_2982 - Uncharacterized protein conserved in bacteria, at 295,690 to 296,187 _2982 EX28DRAFT_2983: EX28DRAFT_2983 - Endonuclease I, at 296,282 to 296,989 _2983 Position (kb) 294 295 296Strain fitness (log2 ratio) -2 -1 0 1 2at 293.872 kb on + strandat 293.873 kb on - strandat 293.895 kb on - strandat 293.952 kb on - strandat 294.030 kb on - strandat 294.190 kb on + strandat 294.206 kb on - strandat 294.232 kb on + strandat 294.261 kb on - strandat 294.316 kb on + strandat 294.356 kb on - strandat 294.608 kb on + strand, within EX28DRAFT_2981at 294.673 kb on - strand, within EX28DRAFT_2981at 294.673 kb on - strand, within EX28DRAFT_2981at 294.673 kb on - strand, within EX28DRAFT_2981at 294.709 kb on - strand, within EX28DRAFT_2981at 294.729 kb on - strand, within EX28DRAFT_2981at 294.733 kb on - strand, within EX28DRAFT_2981at 295.050 kb on + strand, within EX28DRAFT_2981at 295.050 kb on + strand, within EX28DRAFT_2981at 295.050 kb on + strand, within EX28DRAFT_2981at 295.051 kb on - strand, within EX28DRAFT_2981at 295.051 kb on - strand, within EX28DRAFT_2981at 295.051 kb on - strand, within EX28DRAFT_2981at 295.051 kb on - strand, within EX28DRAFT_2981at 295.084 kb on - strand, within EX28DRAFT_2981at 295.086 kb on - strand, within EX28DRAFT_2981at 295.086 kb on - strand, within EX28DRAFT_2981at 295.184 kb on + strand, within EX28DRAFT_2981at 295.185 kb on - strand, within EX28DRAFT_2981at 295.291 kb on + strand, within EX28DRAFT_2981at 295.295 kb on + strand, within EX28DRAFT_2981at 295.295 kb on + strand, within EX28DRAFT_2981at 295.296 kb on - strand, within EX28DRAFT_2981at 295.310 kb on + strand, within EX28DRAFT_2981at 295.467 kb on - strand, within EX28DRAFT_2981at 295.497 kb on + strandat 295.574 kb on + strandat 295.574 kb on + strandat 295.574 kb on + strandat 295.574 kb on + strandat 295.575 kb on - strandat 295.575 kb on - strandat 295.583 kb on + strandat 295.676 kb on + strandat 295.786 kb on + strand, within EX28DRAFT_2982at 295.798 kb on - strand, within EX28DRAFT_2982at 295.798 kb on - strand, within EX28DRAFT_2982at 295.852 kb on + strand, within EX28DRAFT_2982at 296.029 kb on - strand, within EX28DRAFT_2982at 296.065 kb on - strand, within EX28DRAFT_2982at 296.065 kb on - strand, within EX28DRAFT_2982at 296.279 kb on - strandat 296.483 kb on + strand, within EX28DRAFT_2983at 296.485 kb on + strand, within EX28DRAFT_2983at 296.485 kb on + strand, within EX28DRAFT_2983at 296.485 kb on + strand, within EX28DRAFT_2983at 296.486 kb on - strand, within EX28DRAFT_2983

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
remove
293,872 + +0.0
293,873 - +0.4
293,895 - +0.4
293,952 - +0.3
294,030 - +0.2
294,190 + -0.3
294,206 - -0.3
294,232 + +0.4
294,261 - -1.3
294,316 + -0.0
294,356 - +0.5
294,608 + EX28DRAFT_2981 0.27 +0.0
294,673 - EX28DRAFT_2981 0.31 +0.5
294,673 - EX28DRAFT_2981 0.31 +0.1
294,673 - EX28DRAFT_2981 0.31 +1.0
294,709 - EX28DRAFT_2981 0.34 -0.4
294,729 - EX28DRAFT_2981 0.35 +0.8
294,733 - EX28DRAFT_2981 0.36 -0.0
295,050 + EX28DRAFT_2981 0.58 +0.7
295,050 + EX28DRAFT_2981 0.58 +0.2
295,050 + EX28DRAFT_2981 0.58 +0.2
295,051 - EX28DRAFT_2981 0.58 -0.5
295,051 - EX28DRAFT_2981 0.58 +0.1
295,051 - EX28DRAFT_2981 0.58 +1.3
295,051 - EX28DRAFT_2981 0.58 +1.6
295,084 - EX28DRAFT_2981 0.61 +0.2
295,086 - EX28DRAFT_2981 0.61 -0.6
295,086 - EX28DRAFT_2981 0.61 +0.5
295,184 + EX28DRAFT_2981 0.68 -0.2
295,185 - EX28DRAFT_2981 0.68 +0.2
295,291 + EX28DRAFT_2981 0.76 +0.5
295,295 + EX28DRAFT_2981 0.76 -2.4
295,295 + EX28DRAFT_2981 0.76 +0.7
295,296 - EX28DRAFT_2981 0.76 +0.3
295,310 + EX28DRAFT_2981 0.77 +0.5
295,467 - EX28DRAFT_2981 0.88 +1.0
295,497 + +0.5
295,574 + +0.6
295,574 + -0.6
295,574 + +2.5
295,574 + +0.3
295,575 - -0.4
295,575 - +0.0
295,583 + +0.0
295,676 + +0.4
295,786 + EX28DRAFT_2982 0.19 +0.4
295,798 - EX28DRAFT_2982 0.22 +0.1
295,798 - EX28DRAFT_2982 0.22 -1.4
295,852 + EX28DRAFT_2982 0.33 -0.6
296,029 - EX28DRAFT_2982 0.68 +0.3
296,065 - EX28DRAFT_2982 0.75 -0.2
296,065 - EX28DRAFT_2982 0.75 -0.3
296,279 - +0.6
296,483 + EX28DRAFT_2983 0.28 +0.4
296,485 + EX28DRAFT_2983 0.29 +0.5
296,485 + EX28DRAFT_2983 0.29 -0.4
296,485 + EX28DRAFT_2983 0.29 -0.2
296,486 - EX28DRAFT_2983 0.29 +0.2

Or see this region's nucleotide sequence