Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2934

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2933 and EX28DRAFT_2934 are separated by 80 nucleotidesEX28DRAFT_2934 and EX28DRAFT_2935 overlap by 8 nucleotides EX28DRAFT_2933: EX28DRAFT_2933 - ABC-type Fe3+ transport system, periplasmic component, at 242,965 to 244,053 _2933 EX28DRAFT_2934: EX28DRAFT_2934 - ABC-type Fe3+ transport system, permease component, at 244,134 to 245,903 _2934 EX28DRAFT_2935: EX28DRAFT_2935 - ABC-type spermidine/putrescine transport systems, ATPase components, at 245,896 to 246,966 _2935 Position (kb) 244 245 246Strain fitness (log2 ratio) -2 -1 0 1 2at 243.211 kb on + strand, within EX28DRAFT_2933at 243.307 kb on + strand, within EX28DRAFT_2933at 243.322 kb on - strand, within EX28DRAFT_2933at 243.369 kb on + strand, within EX28DRAFT_2933at 243.389 kb on - strand, within EX28DRAFT_2933at 243.406 kb on - strand, within EX28DRAFT_2933at 243.409 kb on + strand, within EX28DRAFT_2933at 243.544 kb on - strand, within EX28DRAFT_2933at 243.544 kb on - strand, within EX28DRAFT_2933at 243.544 kb on - strand, within EX28DRAFT_2933at 243.576 kb on + strand, within EX28DRAFT_2933at 243.576 kb on + strand, within EX28DRAFT_2933at 243.581 kb on - strand, within EX28DRAFT_2933at 243.586 kb on - strand, within EX28DRAFT_2933at 243.618 kb on - strand, within EX28DRAFT_2933at 243.757 kb on + strand, within EX28DRAFT_2933at 243.757 kb on + strand, within EX28DRAFT_2933at 243.757 kb on + strand, within EX28DRAFT_2933at 243.835 kb on + strand, within EX28DRAFT_2933at 243.836 kb on - strand, within EX28DRAFT_2933at 243.883 kb on - strand, within EX28DRAFT_2933at 243.883 kb on - strand, within EX28DRAFT_2933at 244.018 kb on + strandat 244.019 kb on - strandat 244.052 kb on - strandat 244.129 kb on - strandat 244.139 kb on + strandat 244.139 kb on + strandat 244.139 kb on + strandat 244.139 kb on + strandat 244.139 kb on + strandat 244.140 kb on - strandat 244.145 kb on - strandat 244.206 kb on + strandat 244.206 kb on + strandat 244.344 kb on - strand, within EX28DRAFT_2934at 244.568 kb on + strand, within EX28DRAFT_2934at 244.569 kb on - strand, within EX28DRAFT_2934at 244.572 kb on + strand, within EX28DRAFT_2934at 244.572 kb on + strand, within EX28DRAFT_2934at 244.573 kb on - strand, within EX28DRAFT_2934at 244.626 kb on + strand, within EX28DRAFT_2934at 244.626 kb on + strand, within EX28DRAFT_2934at 244.632 kb on + strand, within EX28DRAFT_2934at 244.632 kb on + strand, within EX28DRAFT_2934at 244.632 kb on + strand, within EX28DRAFT_2934at 244.632 kb on + strand, within EX28DRAFT_2934at 244.634 kb on + strand, within EX28DRAFT_2934at 244.635 kb on - strand, within EX28DRAFT_2934at 244.810 kb on + strand, within EX28DRAFT_2934at 244.849 kb on - strand, within EX28DRAFT_2934at 244.849 kb on - strand, within EX28DRAFT_2934at 244.854 kb on + strand, within EX28DRAFT_2934at 244.854 kb on + strand, within EX28DRAFT_2934at 244.855 kb on - strand, within EX28DRAFT_2934at 244.887 kb on + strand, within EX28DRAFT_2934at 245.269 kb on - strand, within EX28DRAFT_2934at 245.328 kb on + strand, within EX28DRAFT_2934at 245.532 kb on + strand, within EX28DRAFT_2934at 245.567 kb on + strand, within EX28DRAFT_2934at 245.567 kb on + strand, within EX28DRAFT_2934at 245.567 kb on + strand, within EX28DRAFT_2934at 245.568 kb on - strand, within EX28DRAFT_2934at 245.727 kb on + strandat 245.742 kb on + strandat 245.742 kb on + strandat 245.742 kb on + strandat 245.743 kb on - strandat 245.857 kb on + strandat 245.893 kb on + strandat 245.893 kb on + strandat 245.894 kb on - strandat 245.951 kb on + strandat 246.088 kb on - strand, within EX28DRAFT_2935at 246.090 kb on + strand, within EX28DRAFT_2935at 246.091 kb on - strand, within EX28DRAFT_2935at 246.139 kb on - strand, within EX28DRAFT_2935at 246.362 kb on - strand, within EX28DRAFT_2935at 246.535 kb on - strand, within EX28DRAFT_2935at 246.535 kb on - strand, within EX28DRAFT_2935at 246.577 kb on + strand, within EX28DRAFT_2935at 246.577 kb on + strand, within EX28DRAFT_2935at 246.578 kb on - strand, within EX28DRAFT_2935at 246.578 kb on - strand, within EX28DRAFT_2935at 246.578 kb on - strand, within EX28DRAFT_2935at 246.823 kb on + strand, within EX28DRAFT_2935at 246.823 kb on + strand, within EX28DRAFT_2935at 246.823 kb on + strand, within EX28DRAFT_2935at 246.844 kb on + strand, within EX28DRAFT_2935at 246.887 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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243,211 + EX28DRAFT_2933 0.23 -0.1
243,307 + EX28DRAFT_2933 0.31 +0.2
243,322 - EX28DRAFT_2933 0.33 +0.2
243,369 + EX28DRAFT_2933 0.37 +0.4
243,389 - EX28DRAFT_2933 0.39 -1.4
243,406 - EX28DRAFT_2933 0.40 +0.1
243,409 + EX28DRAFT_2933 0.41 -0.8
243,544 - EX28DRAFT_2933 0.53 +0.3
243,544 - EX28DRAFT_2933 0.53 -0.4
243,544 - EX28DRAFT_2933 0.53 +0.3
243,576 + EX28DRAFT_2933 0.56 +0.6
243,576 + EX28DRAFT_2933 0.56 +0.4
243,581 - EX28DRAFT_2933 0.57 +0.7
243,586 - EX28DRAFT_2933 0.57 +0.8
243,618 - EX28DRAFT_2933 0.60 -0.4
243,757 + EX28DRAFT_2933 0.73 +1.0
243,757 + EX28DRAFT_2933 0.73 +0.4
243,757 + EX28DRAFT_2933 0.73 -0.1
243,835 + EX28DRAFT_2933 0.80 +0.4
243,836 - EX28DRAFT_2933 0.80 +0.7
243,883 - EX28DRAFT_2933 0.84 -0.4
243,883 - EX28DRAFT_2933 0.84 -0.6
244,018 + +0.8
244,019 - +0.7
244,052 - -0.1
244,129 - +0.1
244,139 + +0.2
244,139 + -0.4
244,139 + +0.5
244,139 + +0.5
244,139 + +1.4
244,140 - +0.3
244,145 - -0.1
244,206 + +0.5
244,206 + -1.2
244,344 - EX28DRAFT_2934 0.12 +0.3
244,568 + EX28DRAFT_2934 0.25 +0.6
244,569 - EX28DRAFT_2934 0.25 +0.2
244,572 + EX28DRAFT_2934 0.25 -0.2
244,572 + EX28DRAFT_2934 0.25 +0.2
244,573 - EX28DRAFT_2934 0.25 +0.3
244,626 + EX28DRAFT_2934 0.28 +0.2
244,626 + EX28DRAFT_2934 0.28 +0.4
244,632 + EX28DRAFT_2934 0.28 +0.4
244,632 + EX28DRAFT_2934 0.28 +0.4
244,632 + EX28DRAFT_2934 0.28 +1.0
244,632 + EX28DRAFT_2934 0.28 +0.7
244,634 + EX28DRAFT_2934 0.28 +0.5
244,635 - EX28DRAFT_2934 0.28 +0.1
244,810 + EX28DRAFT_2934 0.38 -0.9
244,849 - EX28DRAFT_2934 0.40 +0.1
244,849 - EX28DRAFT_2934 0.40 +0.4
244,854 + EX28DRAFT_2934 0.41 +0.0
244,854 + EX28DRAFT_2934 0.41 -0.3
244,855 - EX28DRAFT_2934 0.41 -1.6
244,887 + EX28DRAFT_2934 0.43 +0.2
245,269 - EX28DRAFT_2934 0.64 -2.6
245,328 + EX28DRAFT_2934 0.67 +0.1
245,532 + EX28DRAFT_2934 0.79 +0.1
245,567 + EX28DRAFT_2934 0.81 -0.3
245,567 + EX28DRAFT_2934 0.81 +0.1
245,567 + EX28DRAFT_2934 0.81 +0.0
245,568 - EX28DRAFT_2934 0.81 -2.4
245,727 + -0.1
245,742 + +0.5
245,742 + -0.5
245,742 + -0.6
245,743 - -0.3
245,857 + -1.4
245,893 + +2.0
245,893 + +0.5
245,894 - +0.9
245,951 + +0.3
246,088 - EX28DRAFT_2935 0.18 +0.2
246,090 + EX28DRAFT_2935 0.18 +0.5
246,091 - EX28DRAFT_2935 0.18 -0.3
246,139 - EX28DRAFT_2935 0.23 +0.6
246,362 - EX28DRAFT_2935 0.44 -0.4
246,535 - EX28DRAFT_2935 0.60 -0.3
246,535 - EX28DRAFT_2935 0.60 +0.4
246,577 + EX28DRAFT_2935 0.64 -0.1
246,577 + EX28DRAFT_2935 0.64 -1.4
246,578 - EX28DRAFT_2935 0.64 -0.3
246,578 - EX28DRAFT_2935 0.64 +0.0
246,578 - EX28DRAFT_2935 0.64 -0.2
246,823 + EX28DRAFT_2935 0.87 +0.7
246,823 + EX28DRAFT_2935 0.87 +0.4
246,823 + EX28DRAFT_2935 0.87 +0.3
246,844 + EX28DRAFT_2935 0.89 -0.6
246,887 - +0.4

Or see this region's nucleotide sequence