Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2932

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2931 and EX28DRAFT_2932 are separated by 3 nucleotidesEX28DRAFT_2932 and EX28DRAFT_2933 are separated by 168 nucleotides EX28DRAFT_2931: EX28DRAFT_2931 - Signal transduction histidine kinase regulating citrate/malate metabolism, at 240,454 to 242,091 _2931 EX28DRAFT_2932: EX28DRAFT_2932 - Response regulator of citrate/malate metabolism, at 242,095 to 242,796 _2932 EX28DRAFT_2933: EX28DRAFT_2933 - ABC-type Fe3+ transport system, periplasmic component, at 242,965 to 244,053 _2933 Position (kb) 242 243Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 241.107 kb on - strand, within EX28DRAFT_2931at 241.107 kb on - strand, within EX28DRAFT_2931at 241.117 kb on + strand, within EX28DRAFT_2931at 241.118 kb on - strand, within EX28DRAFT_2931at 241.118 kb on - strand, within EX28DRAFT_2931at 241.118 kb on - strand, within EX28DRAFT_2931at 241.118 kb on - strand, within EX28DRAFT_2931at 241.127 kb on + strand, within EX28DRAFT_2931at 241.160 kb on + strand, within EX28DRAFT_2931at 241.160 kb on + strand, within EX28DRAFT_2931at 241.388 kb on - strand, within EX28DRAFT_2931at 241.451 kb on - strand, within EX28DRAFT_2931at 241.470 kb on + strand, within EX28DRAFT_2931at 241.471 kb on - strand, within EX28DRAFT_2931at 241.531 kb on + strand, within EX28DRAFT_2931at 241.532 kb on - strand, within EX28DRAFT_2931at 241.549 kb on + strand, within EX28DRAFT_2931at 241.549 kb on + strand, within EX28DRAFT_2931at 241.549 kb on + strand, within EX28DRAFT_2931at 241.646 kb on - strand, within EX28DRAFT_2931at 241.646 kb on - strand, within EX28DRAFT_2931at 241.752 kb on + strand, within EX28DRAFT_2931at 241.817 kb on - strand, within EX28DRAFT_2931at 241.830 kb on + strand, within EX28DRAFT_2931at 241.841 kb on + strand, within EX28DRAFT_2931at 241.842 kb on - strand, within EX28DRAFT_2931at 241.842 kb on - strand, within EX28DRAFT_2931at 241.988 kb on - strandat 241.988 kb on - strandat 242.058 kb on + strandat 242.059 kb on - strandat 242.069 kb on + strandat 242.069 kb on + strandat 242.089 kb on + strandat 242.126 kb on + strandat 242.168 kb on - strand, within EX28DRAFT_2932at 242.170 kb on - strand, within EX28DRAFT_2932at 242.275 kb on + strand, within EX28DRAFT_2932at 242.276 kb on - strand, within EX28DRAFT_2932at 242.330 kb on - strand, within EX28DRAFT_2932at 242.411 kb on - strand, within EX28DRAFT_2932at 242.411 kb on - strand, within EX28DRAFT_2932at 242.419 kb on - strand, within EX28DRAFT_2932at 242.693 kb on - strand, within EX28DRAFT_2932at 242.701 kb on + strand, within EX28DRAFT_2932at 242.740 kb on + strandat 242.740 kb on + strandat 242.768 kb on + strandat 242.769 kb on - strandat 242.809 kb on + strandat 242.810 kb on - strandat 242.840 kb on + strandat 242.841 kb on - strandat 242.841 kb on - strandat 242.920 kb on - strandat 242.920 kb on - strandat 242.961 kb on + strandat 242.962 kb on - strandat 243.005 kb on + strandat 243.106 kb on + strand, within EX28DRAFT_2933at 243.211 kb on + strand, within EX28DRAFT_2933at 243.307 kb on + strand, within EX28DRAFT_2933at 243.322 kb on - strand, within EX28DRAFT_2933at 243.369 kb on + strand, within EX28DRAFT_2933at 243.389 kb on - strand, within EX28DRAFT_2933at 243.406 kb on - strand, within EX28DRAFT_2933at 243.409 kb on + strand, within EX28DRAFT_2933at 243.544 kb on - strand, within EX28DRAFT_2933at 243.544 kb on - strand, within EX28DRAFT_2933at 243.544 kb on - strand, within EX28DRAFT_2933at 243.576 kb on + strand, within EX28DRAFT_2933at 243.576 kb on + strand, within EX28DRAFT_2933at 243.581 kb on - strand, within EX28DRAFT_2933at 243.586 kb on - strand, within EX28DRAFT_2933at 243.618 kb on - strand, within EX28DRAFT_2933at 243.757 kb on + strand, within EX28DRAFT_2933at 243.757 kb on + strand, within EX28DRAFT_2933at 243.757 kb on + strand, within EX28DRAFT_2933

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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241,107 - EX28DRAFT_2931 0.40 +1.0
241,107 - EX28DRAFT_2931 0.40 +0.2
241,117 + EX28DRAFT_2931 0.40 +0.5
241,118 - EX28DRAFT_2931 0.41 -3.4
241,118 - EX28DRAFT_2931 0.41 -1.7
241,118 - EX28DRAFT_2931 0.41 +0.1
241,118 - EX28DRAFT_2931 0.41 -1.8
241,127 + EX28DRAFT_2931 0.41 -0.2
241,160 + EX28DRAFT_2931 0.43 +0.4
241,160 + EX28DRAFT_2931 0.43 -1.8
241,388 - EX28DRAFT_2931 0.57 +2.4
241,451 - EX28DRAFT_2931 0.61 -0.6
241,470 + EX28DRAFT_2931 0.62 +0.0
241,471 - EX28DRAFT_2931 0.62 +0.2
241,531 + EX28DRAFT_2931 0.66 -0.7
241,532 - EX28DRAFT_2931 0.66 -1.7
241,549 + EX28DRAFT_2931 0.67 +0.6
241,549 + EX28DRAFT_2931 0.67 +0.4
241,549 + EX28DRAFT_2931 0.67 -0.4
241,646 - EX28DRAFT_2931 0.73 +0.5
241,646 - EX28DRAFT_2931 0.73 +0.0
241,752 + EX28DRAFT_2931 0.79 -0.0
241,817 - EX28DRAFT_2931 0.83 +1.2
241,830 + EX28DRAFT_2931 0.84 -0.4
241,841 + EX28DRAFT_2931 0.85 +1.2
241,842 - EX28DRAFT_2931 0.85 -0.4
241,842 - EX28DRAFT_2931 0.85 +0.3
241,988 - -0.3
241,988 - -0.7
242,058 + +0.2
242,059 - +0.2
242,069 + -0.1
242,069 + +0.5
242,089 + +1.2
242,126 + +0.9
242,168 - EX28DRAFT_2932 0.10 -0.0
242,170 - EX28DRAFT_2932 0.11 +1.8
242,275 + EX28DRAFT_2932 0.26 -0.1
242,276 - EX28DRAFT_2932 0.26 +0.1
242,330 - EX28DRAFT_2932 0.33 +0.6
242,411 - EX28DRAFT_2932 0.45 -1.1
242,411 - EX28DRAFT_2932 0.45 +0.2
242,419 - EX28DRAFT_2932 0.46 +0.2
242,693 - EX28DRAFT_2932 0.85 +0.3
242,701 + EX28DRAFT_2932 0.86 -0.4
242,740 + +0.7
242,740 + +0.3
242,768 + -0.6
242,769 - +0.0
242,809 + +0.3
242,810 - +0.3
242,840 + -1.8
242,841 - +0.3
242,841 - +0.3
242,920 - +0.7
242,920 - +0.3
242,961 + -0.3
242,962 - +0.3
243,005 + -1.6
243,106 + EX28DRAFT_2933 0.13 +0.5
243,211 + EX28DRAFT_2933 0.23 -0.1
243,307 + EX28DRAFT_2933 0.31 +0.2
243,322 - EX28DRAFT_2933 0.33 +0.2
243,369 + EX28DRAFT_2933 0.37 +0.4
243,389 - EX28DRAFT_2933 0.39 -1.4
243,406 - EX28DRAFT_2933 0.40 +0.1
243,409 + EX28DRAFT_2933 0.41 -0.8
243,544 - EX28DRAFT_2933 0.53 +0.3
243,544 - EX28DRAFT_2933 0.53 -0.4
243,544 - EX28DRAFT_2933 0.53 +0.3
243,576 + EX28DRAFT_2933 0.56 +0.6
243,576 + EX28DRAFT_2933 0.56 +0.4
243,581 - EX28DRAFT_2933 0.57 +0.7
243,586 - EX28DRAFT_2933 0.57 +0.8
243,618 - EX28DRAFT_2933 0.60 -0.4
243,757 + EX28DRAFT_2933 0.73 +1.0
243,757 + EX28DRAFT_2933 0.73 +0.4
243,757 + EX28DRAFT_2933 0.73 -0.1

Or see this region's nucleotide sequence