Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2908

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2906 and EX28DRAFT_2907 are separated by 128 nucleotidesEX28DRAFT_2907 and EX28DRAFT_2908 are separated by 131 nucleotidesEX28DRAFT_2908 and EX28DRAFT_2909 are separated by 93 nucleotides EX28DRAFT_2906: EX28DRAFT_2906 - DNA mismatch repair protein MutH, at 217,436 to 218,128 _2906 EX28DRAFT_2907: EX28DRAFT_2907 - Bacterial protein of unknown function (DUF903), at 218,257 to 218,475 _2907 EX28DRAFT_2908: EX28DRAFT_2908 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 218,607 to 219,647 _2908 EX28DRAFT_2909: EX28DRAFT_2909 - Major Facilitator Superfamily, at 219,741 to 220,934 _2909 Position (kb) 218 219 220Strain fitness (log2 ratio) -2 -1 0 1 2at 217.669 kb on - strand, within EX28DRAFT_2906at 217.726 kb on - strand, within EX28DRAFT_2906at 217.787 kb on - strand, within EX28DRAFT_2906at 217.951 kb on + strand, within EX28DRAFT_2906at 217.974 kb on + strand, within EX28DRAFT_2906at 217.975 kb on - strand, within EX28DRAFT_2906at 217.975 kb on - strand, within EX28DRAFT_2906at 217.975 kb on - strand, within EX28DRAFT_2906at 217.978 kb on - strand, within EX28DRAFT_2906at 218.069 kb on + strandat 218.126 kb on + strandat 218.127 kb on - strandat 218.159 kb on + strandat 218.222 kb on + strandat 218.222 kb on + strandat 218.223 kb on - strandat 218.277 kb on - strandat 218.317 kb on - strand, within EX28DRAFT_2907at 218.327 kb on - strand, within EX28DRAFT_2907at 218.454 kb on - strandat 218.463 kb on + strandat 218.548 kb on + strandat 218.548 kb on + strandat 218.549 kb on - strandat 218.549 kb on - strandat 218.549 kb on - strandat 218.549 kb on - strandat 218.550 kb on + strandat 218.550 kb on + strandat 218.582 kb on + strandat 218.582 kb on + strandat 218.582 kb on + strandat 218.583 kb on - strandat 218.584 kb on + strandat 218.584 kb on + strandat 218.584 kb on + strandat 218.584 kb on + strandat 218.584 kb on + strandat 218.585 kb on - strandat 218.585 kb on - strandat 218.718 kb on + strand, within EX28DRAFT_2908at 218.763 kb on + strand, within EX28DRAFT_2908at 218.763 kb on + strand, within EX28DRAFT_2908at 218.764 kb on - strand, within EX28DRAFT_2908at 219.249 kb on + strand, within EX28DRAFT_2908at 219.249 kb on + strand, within EX28DRAFT_2908at 219.249 kb on + strand, within EX28DRAFT_2908at 219.250 kb on - strand, within EX28DRAFT_2908at 219.250 kb on - strand, within EX28DRAFT_2908at 219.250 kb on - strand, within EX28DRAFT_2908at 219.250 kb on - strand, within EX28DRAFT_2908at 219.304 kb on - strand, within EX28DRAFT_2908at 219.323 kb on + strand, within EX28DRAFT_2908at 219.339 kb on + strand, within EX28DRAFT_2908at 219.399 kb on + strand, within EX28DRAFT_2908at 219.400 kb on - strand, within EX28DRAFT_2908at 219.436 kb on - strand, within EX28DRAFT_2908at 219.628 kb on - strandat 219.628 kb on - strandat 219.629 kb on + strandat 219.629 kb on + strandat 219.629 kb on + strandat 219.629 kb on + strandat 219.629 kb on + strandat 219.629 kb on + strandat 219.630 kb on - strandat 219.630 kb on - strandat 219.630 kb on - strandat 219.630 kb on - strandat 219.630 kb on - strandat 219.633 kb on + strandat 219.634 kb on - strandat 219.649 kb on - strandat 219.864 kb on + strand, within EX28DRAFT_2909at 220.009 kb on + strand, within EX28DRAFT_2909at 220.010 kb on - strand, within EX28DRAFT_2909at 220.257 kb on - strand, within EX28DRAFT_2909at 220.341 kb on - strand, within EX28DRAFT_2909at 220.374 kb on + strand, within EX28DRAFT_2909

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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217,669 - EX28DRAFT_2906 0.34 +0.3
217,726 - EX28DRAFT_2906 0.42 +0.3
217,787 - EX28DRAFT_2906 0.51 +0.2
217,951 + EX28DRAFT_2906 0.74 +0.4
217,974 + EX28DRAFT_2906 0.78 +0.4
217,975 - EX28DRAFT_2906 0.78 +0.6
217,975 - EX28DRAFT_2906 0.78 -0.0
217,975 - EX28DRAFT_2906 0.78 +0.9
217,978 - EX28DRAFT_2906 0.78 +0.1
218,069 + -0.1
218,126 + +0.6
218,127 - +0.5
218,159 + +0.0
218,222 + +0.2
218,222 + -0.1
218,223 - +1.1
218,277 - +0.3
218,317 - EX28DRAFT_2907 0.27 -1.1
218,327 - EX28DRAFT_2907 0.32 -0.3
218,454 - -2.1
218,463 + +0.3
218,548 + +0.3
218,548 + -0.0
218,549 - +0.2
218,549 - -0.4
218,549 - +0.1
218,549 - +1.2
218,550 + +0.6
218,550 + +0.1
218,582 + -0.6
218,582 + -1.1
218,582 + -0.4
218,583 - +0.3
218,584 + -1.4
218,584 + +0.4
218,584 + -0.4
218,584 + -0.4
218,584 + +0.1
218,585 - -0.2
218,585 - -0.1
218,718 + EX28DRAFT_2908 0.11 -0.5
218,763 + EX28DRAFT_2908 0.15 +0.2
218,763 + EX28DRAFT_2908 0.15 -0.2
218,764 - EX28DRAFT_2908 0.15 -0.3
219,249 + EX28DRAFT_2908 0.62 +0.3
219,249 + EX28DRAFT_2908 0.62 +0.1
219,249 + EX28DRAFT_2908 0.62 +0.0
219,250 - EX28DRAFT_2908 0.62 +0.2
219,250 - EX28DRAFT_2908 0.62 +1.8
219,250 - EX28DRAFT_2908 0.62 -1.1
219,250 - EX28DRAFT_2908 0.62 -0.6
219,304 - EX28DRAFT_2908 0.67 -1.3
219,323 + EX28DRAFT_2908 0.69 +0.2
219,339 + EX28DRAFT_2908 0.70 +0.2
219,399 + EX28DRAFT_2908 0.76 -0.1
219,400 - EX28DRAFT_2908 0.76 -1.0
219,436 - EX28DRAFT_2908 0.80 +0.2
219,628 - +0.6
219,628 - +0.4
219,629 + +0.5
219,629 + -0.2
219,629 + +0.1
219,629 + -0.2
219,629 + +0.3
219,629 + -1.0
219,630 - -0.6
219,630 - +0.5
219,630 - -0.4
219,630 - -0.1
219,630 - -0.2
219,633 + -0.6
219,634 - +0.0
219,649 - +0.0
219,864 + EX28DRAFT_2909 0.10 +0.2
220,009 + EX28DRAFT_2909 0.22 -2.3
220,010 - EX28DRAFT_2909 0.23 +0.2
220,257 - EX28DRAFT_2909 0.43 -1.9
220,341 - EX28DRAFT_2909 0.50 -2.1
220,374 + EX28DRAFT_2909 0.53 +0.2

Or see this region's nucleotide sequence