Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2847

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2845 and EX28DRAFT_2846 are separated by 58 nucleotidesEX28DRAFT_2846 and EX28DRAFT_2847 overlap by 1 nucleotidesEX28DRAFT_2847 and EX28DRAFT_2848 are separated by 9 nucleotidesEX28DRAFT_2848 and EX28DRAFT_2849 are separated by 9 nucleotides EX28DRAFT_2845: EX28DRAFT_2845 - Protein of unknown function (DUF3561), at 146,155 to 146,481 _2845 EX28DRAFT_2846: EX28DRAFT_2846 - adenylyl-sulfate kinase, at 146,540 to 147,145 _2846 EX28DRAFT_2847: EX28DRAFT_2847 - sulfate adenylyltransferase, large subunit, at 147,145 to 148,569 _2847 EX28DRAFT_2848: EX28DRAFT_2848 - sulfate adenylyltransferase, small subunit, at 148,579 to 149,487 _2848 EX28DRAFT_2849: EX28DRAFT_2849 - uroporphyrin-III C-methyltransferase, at 149,497 to 150,855 _2849 Position (kb) 147 148 149Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 146.145 kb on - strandat 146.156 kb on + strandat 146.226 kb on - strand, within EX28DRAFT_2845at 146.312 kb on + strand, within EX28DRAFT_2845at 146.313 kb on - strand, within EX28DRAFT_2845at 146.462 kb on + strandat 146.462 kb on + strandat 146.463 kb on - strandat 146.463 kb on - strandat 146.481 kb on + strandat 146.482 kb on - strandat 146.485 kb on + strandat 146.485 kb on + strandat 146.485 kb on + strandat 146.486 kb on - strandat 146.486 kb on - strandat 146.580 kb on - strandat 146.580 kb on - strandat 146.588 kb on + strandat 146.649 kb on + strand, within EX28DRAFT_2846at 146.650 kb on - strand, within EX28DRAFT_2846at 146.650 kb on - strand, within EX28DRAFT_2846at 146.704 kb on - strand, within EX28DRAFT_2846at 146.704 kb on - strand, within EX28DRAFT_2846at 146.825 kb on - strand, within EX28DRAFT_2846at 146.967 kb on + strand, within EX28DRAFT_2846at 146.968 kb on - strand, within EX28DRAFT_2846at 146.975 kb on + strand, within EX28DRAFT_2846at 147.147 kb on - strandat 147.274 kb on - strandat 147.315 kb on + strand, within EX28DRAFT_2847at 147.316 kb on - strand, within EX28DRAFT_2847at 147.506 kb on + strand, within EX28DRAFT_2847at 147.506 kb on + strand, within EX28DRAFT_2847at 147.506 kb on + strand, within EX28DRAFT_2847at 147.506 kb on + strand, within EX28DRAFT_2847at 147.506 kb on + strand, within EX28DRAFT_2847at 147.506 kb on + strand, within EX28DRAFT_2847at 147.507 kb on - strand, within EX28DRAFT_2847at 147.507 kb on - strand, within EX28DRAFT_2847at 147.619 kb on - strand, within EX28DRAFT_2847at 147.619 kb on - strand, within EX28DRAFT_2847at 147.748 kb on + strand, within EX28DRAFT_2847at 147.749 kb on - strand, within EX28DRAFT_2847at 147.815 kb on + strand, within EX28DRAFT_2847at 147.816 kb on - strand, within EX28DRAFT_2847at 147.902 kb on + strand, within EX28DRAFT_2847at 147.902 kb on + strand, within EX28DRAFT_2847at 147.902 kb on + strand, within EX28DRAFT_2847at 147.961 kb on + strand, within EX28DRAFT_2847at 147.962 kb on - strand, within EX28DRAFT_2847at 147.972 kb on + strand, within EX28DRAFT_2847at 148.035 kb on + strand, within EX28DRAFT_2847at 148.111 kb on - strand, within EX28DRAFT_2847at 148.111 kb on - strand, within EX28DRAFT_2847at 148.243 kb on - strand, within EX28DRAFT_2847at 148.518 kb on - strandat 148.557 kb on + strandat 148.558 kb on - strandat 148.893 kb on - strand, within EX28DRAFT_2848at 148.893 kb on - strand, within EX28DRAFT_2848at 148.976 kb on + strand, within EX28DRAFT_2848at 149.047 kb on - strand, within EX28DRAFT_2848at 149.047 kb on - strand, within EX28DRAFT_2848at 149.047 kb on - strand, within EX28DRAFT_2848at 149.047 kb on - strand, within EX28DRAFT_2848at 149.218 kb on - strand, within EX28DRAFT_2848at 149.241 kb on - strand, within EX28DRAFT_2848at 149.271 kb on - strand, within EX28DRAFT_2848at 149.387 kb on + strand, within EX28DRAFT_2848at 149.387 kb on + strand, within EX28DRAFT_2848at 149.387 kb on + strand, within EX28DRAFT_2848at 149.388 kb on - strand, within EX28DRAFT_2848at 149.388 kb on - strand, within EX28DRAFT_2848at 149.388 kb on - strand, within EX28DRAFT_2848at 149.388 kb on - strand, within EX28DRAFT_2848at 149.388 kb on - strand, within EX28DRAFT_2848at 149.440 kb on - strandat 149.469 kb on + strandat 149.470 kb on - strandat 149.470 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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146,145 - -0.1
146,156 + -0.1
146,226 - EX28DRAFT_2845 0.22 +0.4
146,312 + EX28DRAFT_2845 0.48 -1.3
146,313 - EX28DRAFT_2845 0.48 -2.2
146,462 + +0.0
146,462 + +1.1
146,463 - +1.0
146,463 - -0.7
146,481 + -0.3
146,482 - +0.3
146,485 + -0.0
146,485 + -0.3
146,485 + -0.0
146,486 - +0.3
146,486 - +0.5
146,580 - -2.3
146,580 - -2.0
146,588 + -4.6
146,649 + EX28DRAFT_2846 0.18 -2.5
146,650 - EX28DRAFT_2846 0.18 -2.2
146,650 - EX28DRAFT_2846 0.18 -1.9
146,704 - EX28DRAFT_2846 0.27 -2.9
146,704 - EX28DRAFT_2846 0.27 -3.3
146,825 - EX28DRAFT_2846 0.47 -2.5
146,967 + EX28DRAFT_2846 0.70 -3.1
146,968 - EX28DRAFT_2846 0.71 -1.5
146,975 + EX28DRAFT_2846 0.72 -3.6
147,147 - -4.8
147,274 - -1.6
147,315 + EX28DRAFT_2847 0.12 -2.7
147,316 - EX28DRAFT_2847 0.12 -1.8
147,506 + EX28DRAFT_2847 0.25 -4.1
147,506 + EX28DRAFT_2847 0.25 -2.4
147,506 + EX28DRAFT_2847 0.25 -0.3
147,506 + EX28DRAFT_2847 0.25 -2.4
147,506 + EX28DRAFT_2847 0.25 -0.6
147,506 + EX28DRAFT_2847 0.25 -0.5
147,507 - EX28DRAFT_2847 0.25 -1.6
147,507 - EX28DRAFT_2847 0.25 -2.8
147,619 - EX28DRAFT_2847 0.33 -1.0
147,619 - EX28DRAFT_2847 0.33 -1.7
147,748 + EX28DRAFT_2847 0.42 -3.5
147,749 - EX28DRAFT_2847 0.42 -1.9
147,815 + EX28DRAFT_2847 0.47 -2.2
147,816 - EX28DRAFT_2847 0.47 -1.8
147,902 + EX28DRAFT_2847 0.53 -2.1
147,902 + EX28DRAFT_2847 0.53 -2.7
147,902 + EX28DRAFT_2847 0.53 -1.7
147,961 + EX28DRAFT_2847 0.57 -1.5
147,962 - EX28DRAFT_2847 0.57 -1.0
147,972 + EX28DRAFT_2847 0.58 -2.1
148,035 + EX28DRAFT_2847 0.62 -2.5
148,111 - EX28DRAFT_2847 0.68 -1.7
148,111 - EX28DRAFT_2847 0.68 -1.6
148,243 - EX28DRAFT_2847 0.77 -2.9
148,518 - -0.9
148,557 + -2.2
148,558 - -2.9
148,893 - EX28DRAFT_2848 0.35 -2.1
148,893 - EX28DRAFT_2848 0.35 -1.9
148,976 + EX28DRAFT_2848 0.44 -4.1
149,047 - EX28DRAFT_2848 0.51 -1.6
149,047 - EX28DRAFT_2848 0.51 -3.9
149,047 - EX28DRAFT_2848 0.51 -3.7
149,047 - EX28DRAFT_2848 0.51 -1.2
149,218 - EX28DRAFT_2848 0.70 -1.5
149,241 - EX28DRAFT_2848 0.73 -3.5
149,271 - EX28DRAFT_2848 0.76 -4.8
149,387 + EX28DRAFT_2848 0.89 -2.7
149,387 + EX28DRAFT_2848 0.89 -1.9
149,387 + EX28DRAFT_2848 0.89 -3.5
149,388 - EX28DRAFT_2848 0.89 -2.4
149,388 - EX28DRAFT_2848 0.89 -1.3
149,388 - EX28DRAFT_2848 0.89 -1.1
149,388 - EX28DRAFT_2848 0.89 -1.7
149,388 - EX28DRAFT_2848 0.89 -2.3
149,440 - -2.4
149,469 + -1.6
149,470 - -2.2
149,470 - +0.4

Or see this region's nucleotide sequence