Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2830

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2829 and EX28DRAFT_2830 are separated by 139 nucleotidesEX28DRAFT_2830 and EX28DRAFT_2831 are separated by 10 nucleotides EX28DRAFT_2829: EX28DRAFT_2829 - DNA mismatch repair protein MutS, at 131,614 to 134,175 _2829 EX28DRAFT_2830: EX28DRAFT_2830 - hypothetical protein, at 134,315 to 134,536 _2830 EX28DRAFT_2831: EX28DRAFT_2831 - UbiD family decarboxylase, at 134,547 to 135,974 _2831 Position (kb) 134 135Strain fitness (log2 ratio) -1 0 1 2 3at 133.315 kb on - strand, within EX28DRAFT_2829at 133.376 kb on + strand, within EX28DRAFT_2829at 133.476 kb on + strand, within EX28DRAFT_2829at 133.477 kb on - strand, within EX28DRAFT_2829at 133.480 kb on + strand, within EX28DRAFT_2829at 133.480 kb on + strand, within EX28DRAFT_2829at 133.480 kb on + strand, within EX28DRAFT_2829at 133.480 kb on + strand, within EX28DRAFT_2829at 133.480 kb on + strand, within EX28DRAFT_2829at 133.480 kb on + strand, within EX28DRAFT_2829at 133.480 kb on + strand, within EX28DRAFT_2829at 133.480 kb on + strand, within EX28DRAFT_2829at 133.481 kb on - strand, within EX28DRAFT_2829at 133.481 kb on - strand, within EX28DRAFT_2829at 133.482 kb on + strand, within EX28DRAFT_2829at 133.483 kb on - strand, within EX28DRAFT_2829at 133.483 kb on - strand, within EX28DRAFT_2829at 133.517 kb on - strand, within EX28DRAFT_2829at 133.517 kb on - strand, within EX28DRAFT_2829at 133.517 kb on - strand, within EX28DRAFT_2829at 133.528 kb on + strand, within EX28DRAFT_2829at 133.717 kb on + strand, within EX28DRAFT_2829at 133.717 kb on + strand, within EX28DRAFT_2829at 133.718 kb on - strand, within EX28DRAFT_2829at 133.718 kb on - strand, within EX28DRAFT_2829at 133.893 kb on + strand, within EX28DRAFT_2829at 133.893 kb on + strand, within EX28DRAFT_2829at 133.893 kb on + strand, within EX28DRAFT_2829at 133.894 kb on - strand, within EX28DRAFT_2829at 133.894 kb on - strand, within EX28DRAFT_2829at 133.894 kb on - strand, within EX28DRAFT_2829at 133.894 kb on - strand, within EX28DRAFT_2829at 133.894 kb on - strand, within EX28DRAFT_2829at 133.925 kb on - strandat 133.925 kb on - strandat 134.043 kb on + strandat 134.153 kb on - strandat 134.280 kb on + strandat 134.318 kb on + strandat 134.318 kb on + strandat 134.439 kb on + strand, within EX28DRAFT_2830at 134.439 kb on + strand, within EX28DRAFT_2830at 134.440 kb on - strand, within EX28DRAFT_2830at 134.440 kb on - strand, within EX28DRAFT_2830at 134.506 kb on + strand, within EX28DRAFT_2830at 134.788 kb on - strand, within EX28DRAFT_2831at 134.832 kb on + strand, within EX28DRAFT_2831at 134.924 kb on + strand, within EX28DRAFT_2831at 134.925 kb on - strand, within EX28DRAFT_2831at 134.947 kb on + strand, within EX28DRAFT_2831at 134.988 kb on - strand, within EX28DRAFT_2831at 135.031 kb on + strand, within EX28DRAFT_2831at 135.062 kb on - strand, within EX28DRAFT_2831at 135.139 kb on + strand, within EX28DRAFT_2831at 135.139 kb on + strand, within EX28DRAFT_2831at 135.313 kb on + strand, within EX28DRAFT_2831at 135.314 kb on - strand, within EX28DRAFT_2831at 135.366 kb on - strand, within EX28DRAFT_2831at 135.481 kb on + strand, within EX28DRAFT_2831at 135.482 kb on - strand, within EX28DRAFT_2831

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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133,315 - EX28DRAFT_2829 0.66 +0.0
133,376 + EX28DRAFT_2829 0.69 +0.3
133,476 + EX28DRAFT_2829 0.73 -0.0
133,477 - EX28DRAFT_2829 0.73 +0.3
133,480 + EX28DRAFT_2829 0.73 -0.4
133,480 + EX28DRAFT_2829 0.73 +0.1
133,480 + EX28DRAFT_2829 0.73 -0.4
133,480 + EX28DRAFT_2829 0.73 -0.5
133,480 + EX28DRAFT_2829 0.73 +0.3
133,480 + EX28DRAFT_2829 0.73 -0.0
133,480 + EX28DRAFT_2829 0.73 +0.0
133,480 + EX28DRAFT_2829 0.73 +0.2
133,481 - EX28DRAFT_2829 0.73 -0.8
133,481 - EX28DRAFT_2829 0.73 -0.5
133,482 + EX28DRAFT_2829 0.73 +0.5
133,483 - EX28DRAFT_2829 0.73 +0.3
133,483 - EX28DRAFT_2829 0.73 -0.0
133,517 - EX28DRAFT_2829 0.74 +0.1
133,517 - EX28DRAFT_2829 0.74 +0.8
133,517 - EX28DRAFT_2829 0.74 -1.2
133,528 + EX28DRAFT_2829 0.75 -0.6
133,717 + EX28DRAFT_2829 0.82 +0.1
133,717 + EX28DRAFT_2829 0.82 +0.0
133,718 - EX28DRAFT_2829 0.82 +0.2
133,718 - EX28DRAFT_2829 0.82 +0.1
133,893 + EX28DRAFT_2829 0.89 +3.2
133,893 + EX28DRAFT_2829 0.89 -0.1
133,893 + EX28DRAFT_2829 0.89 +0.7
133,894 - EX28DRAFT_2829 0.89 -0.0
133,894 - EX28DRAFT_2829 0.89 -0.2
133,894 - EX28DRAFT_2829 0.89 -0.1
133,894 - EX28DRAFT_2829 0.89 -0.0
133,894 - EX28DRAFT_2829 0.89 +0.6
133,925 - -0.2
133,925 - +0.4
134,043 + -0.6
134,153 - -0.0
134,280 + -0.6
134,318 + -0.4
134,318 + -0.2
134,439 + EX28DRAFT_2830 0.56 -0.5
134,439 + EX28DRAFT_2830 0.56 +0.1
134,440 - EX28DRAFT_2830 0.56 +1.6
134,440 - EX28DRAFT_2830 0.56 +0.5
134,506 + EX28DRAFT_2830 0.86 -0.2
134,788 - EX28DRAFT_2831 0.17 -0.4
134,832 + EX28DRAFT_2831 0.20 +1.1
134,924 + EX28DRAFT_2831 0.26 +0.9
134,925 - EX28DRAFT_2831 0.26 -0.4
134,947 + EX28DRAFT_2831 0.28 +1.7
134,988 - EX28DRAFT_2831 0.31 -0.1
135,031 + EX28DRAFT_2831 0.34 -0.5
135,062 - EX28DRAFT_2831 0.36 +0.5
135,139 + EX28DRAFT_2831 0.41 +0.3
135,139 + EX28DRAFT_2831 0.41 +0.3
135,313 + EX28DRAFT_2831 0.54 +0.3
135,314 - EX28DRAFT_2831 0.54 -0.3
135,366 - EX28DRAFT_2831 0.57 -0.5
135,481 + EX28DRAFT_2831 0.65 +0.0
135,482 - EX28DRAFT_2831 0.65 +1.1

Or see this region's nucleotide sequence